CsGy1G009670 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G009670
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	thylakoid lumenal 17.9 kDa protein, chloroplastic
Location	Chr1 : 5986342 .. 5988626 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAAACAGAACCAAAAAATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGGACAACAACAACAAGAACCAGTACCACTCCCCAGTCTCTGTTCCATCCATGTCCACTCTTCAAAATGCAAATCACAAGCCCATTTTTCTCTCTCATCTCCTTTCTTTTGCCCTCTCCATAACTCTAAGCTCACCATTTCCTTCTATCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTCTCTCAATCCAAGAACCTACCAACTGGACTGGAAAATGGGTACGCTTTGAATTTTGTAATTTCGACTGCTACTCTTCAGTTTTGTTACTTGTTTATTTGTAGTTTCTATCTGCCCTAAATTTGCATTGGTTTTTCTCAAGTATTTCATTGACAATGTGGCTAACTGCATCTTCGGTTTTCCCTCAATTTTGTCCTCTTTGATGTTCCAGGAAAATTATGCCCTGCCCATCAGCCAATCCCTCTTGTGTTTCCACAAATCCCAAATCATCTTCTTTTGCTTTCCCTTTAAACATTCCTGATAATTTCAGTGGGAATCCAATTCAGGTTTTAGTTCTCTGAAAGCTGAGCCTGATTTAATGTTCTTCATCAAAATTAGGTTCTCTTGGTCGTGTTGCTTTTCATGTTTCTGCTCTACATTTATTTGCAGAAACTGCAAGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAAGATACGCCATATGGTAATTGAACTGAACCTACGCTAGCAGATTTAATCTTTGCATTTCAGATTGATATACATATGTTGATTAGAATGCTGAGATAGAGATGAGAATGGGTTCTATTTACTATAGTGACCGTTGGCTTATTCTCTTGAATTCAGTAGTGCTTTAACATAGATAAGGAAGTAAATCCTTGGCTGCGTTATAACTTCTAAGTTTGATTTTTGAACTCTCAAATACAGGTGTGAGTTCCTTAAAATTCCGTTGTTATAACTAACAAATCCACGGACCTTCTACACTTTAACTTTAACAATGATCATAAGTTAGAGCATCTATCCAGCACAAAATTGAAGGATAAACAGTTTGTTTTTATTTTTTTTAACAAAGTGTCTGCATTAGACATGTGTCGTACATGGATATGTCTGGACACGCTTTAGACACATGTCCGACATGCTAAAAGAAGTGTCAGGAATTTTTTCTTCTAATTTTGGACAAGACTTTGACATGGTTATGGCTTTAGAAAATATTAACTCACAAAATAGGGAGAAAATTTGAGATTCTCTTTTAGTTTGAATCCTTATATATTGATCAATCCTAAAGTAATAGAATGATATCCTCCTCCTCTAGTTATAGCCAACTAAATCTCTTTATATCTTAAGGTTTCATACATCGTTAATCAACTTTACTTGTGTTTGTTTCTAGTGAAGTATATTTTGCATGGATTTTAATTTACATGTATTTATCTATAATGAAGTTAATATATCTAACATACACACATTTCATATTTAAAAGAATTGTATCCCAAATGTATCCATGTCCAATTATTTCAGAAATGGACGTGTTGCCATATCCATGTTGTGTCATGTGTGCGTTTGTGCTTCTTAGTTCGTAAACTTATTCGATGCAAAATCAAAAGTTCAAGTTAGACACTTATTAATTTTACATGCCAATTAAGTATACTTGAAAAGTTTATGACAGTCTACATTTTTGGATCTCACATAAAAATTTCGAGCCTTACACTTAAAAGAAGAGTAAGCTTATGGCTTATAAAACAAGATGCATTCATGATTATGACAGGCCAATATTTAGAAGCTGAAGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGATTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGCATTGGTATTCTCCAACCTTCGATTCCATGGATGACTAATACAAACCCTCTGCTTCTTTCTTTATTCTTTATTTTTCTTCCCTTTTCATTTTTACTCAATCTGATTAAACTCATTTTCAGCCGCATTTATTTTAGCCACATATAAAAGAATGTTCAACTTCATTATCATCTATAATTATTCATCTTGTTGTTCATATATGGTGAGTTATTTATACCAACTATTGTTTGGAAATTATGTTTTAATTAATCAAAACCTATGTTTAGCTCTAGTTATTGAA

mRNA sequence

TGAAAACAGAACCAAAAAATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGGACAACAACAACAAGAACCAGTACCACTCCCCAGTCTCTGTTCCATCCATGTCCACTCTTCAAAATGCAAATCACAAGCCCATTTTTCTCTCTCATCTCCTTTCTTTTGCCCTCTCCATAACTCTAAGCTCACCATTTCCTTCTATCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTCTCTCAATCCAAGAACCTACCAACTGGACTGGAAAATGGGAAAATTATGCCCTGCCCATCAGCCAATCCCTCTTGTGTTTCCACAAATCCCAAATCATCTTCTTTTGCTTTCCCTTTAAACATTCCTGATAATTTCAGTGGGAATCCAATTCAGAAACTGCAAGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAAGATACGCCATATGGCCAATATTTAGAAGCTGAAGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGATTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGCATTGGTATTCTCCAACCTTCGATTCCATGGATGACTAATACAAACCCTCTGCTTCTTTCTTTATTCTTTATTTTTCTTCCCTTTTCATTTTTACTCAATCTGATTAAACTCATTTTCAGCCGCATTTATTTTAGCCACATATAAAAGAATGTTCAACTTCATTATCATCTATAATTATTCATCTTGTTGTTCATATATGGTGAGTTATTTATACCAACTATTGTTTGGAAATTATGTTTTAATTAATCAAAACCTATGTTTAGCTCTAGTTATTGAA

Coding sequence (CDS)

ATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGGACAACAACAACAAGAACCAGTACCACTCCCCAGTCTCTGTTCCATCCATGTCCACTCTTCAAAATGCAAATCACAAGCCCATTTTTCTCTCTCATCTCCTTTCTTTTGCCCTCTCCATAACTCTAAGCTCACCATTTCCTTCTATCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTCTCTCAATCCAAGAACCTACCAACTGGACTGGAAAATGGGAAAATTATGCCCTGCCCATCAGCCAATCCCTCTTGTGTTTCCACAAATCCCAAATCATCTTCTTTTGCTTTCCCTTTAAACATTCCTGATAATTTCAGTGGGAATCCAATTCAGAAACTGCAAGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAAGATACGCCATATGGCCAATATTTAGAAGCTGAAGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGATTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGCATTGGTATTCTCCAACCTTCGATTCCATGGATGACTAA

Protein sequence

MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD

Homology

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BLAST of CsGy1G009670 vs. NCBI nr
Match: XP_004154123.1 (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus] >KGN64418.1 hypothetical protein Csa_1G050570 [Cucumis sativus])

HSP 1 Score: 464.9 bits (1195), Expect = 1.6e-127
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60
           MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS
Sbjct: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60

Query: 61  SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120
           SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA
Sbjct: 61  SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120

Query: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180
           FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR
Sbjct: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180

Query: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232

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BLAST of CsGy1G009670 vs. NCBI nr
Match: XP_008439847.1 (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo])

HSP 1 Score: 447.6 bits (1150), Expect = 2.6e-122
Identity = 224/233 (96.14%), Postives = 228/233 (97.85%), Query Frame = 0


Query: 1   MSSLQFRPPLVSPWKKKD-NNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITL 60
           MSSLQFRP LVSPWKKKD NNNKNQYHSPVSVPSMS LQN NHKPIFLSHLLSFALSITL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60

Query: 61  SSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSF 120
           +SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPS NPSCVSTNPKSSSF
Sbjct: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120

Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
           AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 RGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           +GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

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BLAST of CsGy1G009670 vs. NCBI nr
Match: XP_023542750.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 385.2 bits (988), Expect = 1.6e-103
Identity = 196/236 (83.05%), Postives = 213/236 (90.25%), Query Frame = 0


Query: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPV----SVPSMSTLQNANHKPIFLSHLLSFALS 60
           MSSL FRP LVSPWKKK NN  NQ+ S V    S PSM+ L N+NHKPIF+SHLLSFALS
Sbjct: 1   MSSLHFRPALVSPWKKKSNN--NQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALS 60

Query: 61  ITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKS 120
           ITL+SPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPS NPSCVSTNPKS
Sbjct: 61  ITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKS 120

Query: 121 SSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIE 180
           SSFAFPL+IP++F+GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIE
Sbjct: 121 SSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIE 180

Query: 181 FLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           FLVRGDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 FLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

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BLAST of CsGy1G009670 vs. NCBI nr
Match: XP_022994453.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 382.9 bits (982), Expect = 7.9e-103
Identity = 195/236 (82.63%), Postives = 211/236 (89.41%), Query Frame = 0


Query: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPV----SVPSMSTLQNANHKPIFLSHLLSFALS 60
           MSSL FRP LVSPWKK  NNN NQ+ S V    S PSM+ L N NHKPIF+SHLLSFALS
Sbjct: 1   MSSLHFRPALVSPWKK--NNNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALS 60

Query: 61  ITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKS 120
           ITL+SPFPS+AIPS NSLSSPLSPTTPFSQSK+ P GLENGKI PCPS NPSCVSTNPKS
Sbjct: 61  ITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDFPIGLENGKIRPCPSINPSCVSTNPKS 120

Query: 121 SSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIE 180
           SSFAFPL+IP++F+GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIE
Sbjct: 121 SSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIE 180

Query: 181 FLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           FLVRGDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 FLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]

BLAST of CsGy1G009670 vs. NCBI nr
Match: XP_022955221.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 379.0 bits (972), Expect = 1.1e-101
Identity = 194/236 (82.20%), Postives = 210/236 (88.98%), Query Frame = 0


Query: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPV----SVPSMSTLQNANHKPIFLSHLLSFALS 60
           MSSL FRP LVSPWKKK  N  NQ+ S V    S PSM+ L N NHKPIF+SHLLSFALS
Sbjct: 1   MSSLHFRPALVSPWKKKKKN--NQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALS 60

Query: 61  ITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKS 120
           ITL+SPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPS NPSCVSTNPKS
Sbjct: 61  ITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKS 120

Query: 121 SSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIE 180
           SSFAF L+IP++F+GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIE
Sbjct: 121 SSFAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIE 180

Query: 181 FLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           FLVRGDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 FLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]

BLAST of CsGy1G009670 vs. TAIR10
Match: AT4G24930.1 (thylakoid lumenal 17.9 kDa protein, chloroplast)

HSP 1 Score: 246.1 bits (627), Expect = 2.1e-65
Identity = 126/186 (67.74%), Postives = 156/186 (83.87%), Query Frame = 0


Query: 47  LSHLLSFALSITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSAN 106
           L  L+SFAL+I+L+S  P++AIPSL+S S PL  TTPF+QSK + TGL NGKI PCPS N
Sbjct: 43  LPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNGKIRPCPSTN 102

Query: 107 PSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEV 166
           P CVSTNP SSSF+FPL IP+  + +PI+KL+EAI+ TQ+NPK  V+EDTPYG+Y+EAEV
Sbjct: 103 PGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEV 162

Query: 167 D-GNFGRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSP 226
           + G F RDV+EFLV+ DV AYR MATKVT+VYPFTTA GDSKGQEER++K+IDQL WY+P
Sbjct: 163 EGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAP 222

Query: 227 TFDSMD 232
           TF+SM+
Sbjct: 223 TFESME 225

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BLAST of CsGy1G009670 vs. Swiss-Prot
Match: sp|Q9SW33|TL1Y_ARATH (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g24930 PE=1 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 3.8e-64
Identity = 126/186 (67.74%), Postives = 156/186 (83.87%), Query Frame = 0


Query: 47  LSHLLSFALSITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSAN 106
           L  L+SFAL+I+L+S  P++AIPSL+S S PL  TTPF+QSK + TGL NGKI PCPS N
Sbjct: 43  LPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNGKIRPCPSTN 102

Query: 107 PSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEV 166
           P CVSTNP SSSF+FPL IP+  + +PI+KL+EAI+ TQ+NPK  V+EDTPYG+Y+EAEV
Sbjct: 103 PGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEV 162

Query: 167 D-GNFGRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSP 226
           + G F RDV+EFLV+ DV AYR MATKVT+VYPFTTA GDSKGQEER++K+IDQL WY+P
Sbjct: 163 EGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAP 222

Query: 227 TFDSMD 232
           TF+SM+
Sbjct: 223 TFESME 225

[Close]

BLAST of CsGy1G009670 vs. TrEMBL
Match: tr|A0A0A0LRK9|A0A0A0LRK9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 1.0e-127
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60
           MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS
Sbjct: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60

Query: 61  SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120
           SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA
Sbjct: 61  SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120

Query: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180
           FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR
Sbjct: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180

Query: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232

[Close]

BLAST of CsGy1G009670 vs. TrEMBL
Match: tr|A0A1S3AZP3|A0A1S3AZP3_CUCME (thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484512 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.7e-122
Identity = 224/233 (96.14%), Postives = 228/233 (97.85%), Query Frame = 0


Query: 1   MSSLQFRPPLVSPWKKKD-NNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITL 60
           MSSLQFRP LVSPWKKKD NNNKNQYHSPVSVPSMS LQN NHKPIFLSHLLSFALSITL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60

Query: 61  SSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSF 120
           +SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPS NPSCVSTNPKSSSF
Sbjct: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120

Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
           AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 RGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
           +GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

[Close]

BLAST of CsGy1G009670 vs. TrEMBL
Match: tr|A0A2I4F007|A0A2I4F007_9ROSI (thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Juglans regia OX=51240 GN=LOC108994291 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 4.4e-78
Identity = 152/197 (77.16%), Postives = 168/197 (85.28%), Query Frame = 0


Query: 35  STLQNANHKPIFLSHLLSFALSITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGL 94
           +T Q  N KPI LS LLS AL+ TLSSP PS+AIPSLNS SS LSPTTPFSQSKNL TGL
Sbjct: 32  ATFQIPNPKPILLSKLLSLALAATLSSPLPSLAIPSLNSQSSLLSPTTPFSQSKNLQTGL 91

Query: 95  ENGKIMPCPSANPSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVE 154
           ENGKI PCPS NP CVSTNPKSSSFAFP  IP+N + N +QKLQEAIL+TQ+N KIQVVE
Sbjct: 92  ENGKIRPCPSTNPGCVSTNPKSSSFAFPWRIPENSTNNAVQKLQEAILKTQKNAKIQVVE 151

Query: 155 DTPYGQYLEAEVDGNFGRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMR 214
           DTP GQYL+AE+DG F RDV+EFLV+GDV AYR MATKVTYVYPFTTALGDSKGQEERM+
Sbjct: 152 DTPNGQYLQAEIDGGFDRDVLEFLVKGDVVAYRSMATKVTYVYPFTTALGDSKGQEERMK 211

Query: 215 KIIDQLHWYSPTFDSMD 232
           KI D L WY+P+FD+MD
Sbjct: 212 KIKDLLGWYAPSFDAMD 228

[Close]

BLAST of CsGy1G009670 vs. TrEMBL
Match: tr|A0A2C9UJ46|A0A2C9UJ46_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G050500 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 9.9e-78
Identity = 148/196 (75.51%), Postives = 171/196 (87.24%), Query Frame = 0


Query: 36  TLQNANHKPIFLSHLLSFALSITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLE 95
           +LQN   KPI  ++L+S AL+ TL+SP PS+AIPS NSLS  L PTTPFS+SKNLP GLE
Sbjct: 34  SLQNPALKPILFTNLVSLALTFTLNSPLPSLAIPSPNSLSPLLPPTTPFSESKNLPIGLE 93

Query: 96  NGKIMPCPSANPSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVED 155
           +GKI PCPS NPSCVSTNPKSSSFAFPL IPD+ + N IQKLQEAIL+TQ+NPKI+V+ED
Sbjct: 94  DGKIRPCPSINPSCVSTNPKSSSFAFPLRIPDSTTENAIQKLQEAILKTQKNPKIRVIED 153

Query: 156 TPYGQYLEAEVDGNFGRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRK 215
           TP GQYL+AEVDG FG+DV+EFLV+GDV AYR MATKVTYVYPFTTA GDSKGQEERM+K
Sbjct: 154 TPNGQYLQAEVDGGFGQDVLEFLVKGDVVAYRCMATKVTYVYPFTTAFGDSKGQEERMKK 213

Query: 216 IIDQLHWYSPTFDSMD 232
           IIDQL WY+P+F+SMD
Sbjct: 214 IIDQLDWYAPSFESMD 229

[Close]

BLAST of CsGy1G009670 vs. TrEMBL
Match: tr|A0A2P4HPZ1|A0A2P4HPZ1_QUESU (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_08911 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 3.8e-77
Identity = 155/201 (77.11%), Postives = 171/201 (85.07%), Query Frame = 0


Query: 34  MSTLQNANHKPIFLSHLLSFALSITLSSPFPSIAIPSLNSLS--SPLSPTTPFSQSKNLP 93
           ++T  N N KPI LS LLS AL+ TLSSP PS+AIPSLNS S   P SPTTPFS+SK L 
Sbjct: 169 VTTSLNPNPKPILLSKLLSLALAATLSSPLPSLAIPSLNSQSFQLPPSPTTPFSESKTLE 228

Query: 94  TGLENGKIMPCPSANPSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQ 153
           TGLENGKI PCPS NP CVSTNPKSSSFAFP  IP+N SGN IQKLQEAIL+TQ+N KIQ
Sbjct: 229 TGLENGKIRPCPSTNPGCVSTNPKSSSFAFPWTIPENSSGNAIQKLQEAILKTQKNAKIQ 288

Query: 154 VVEDTPYGQYLEAEV-DGNFGRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQE 213
           VVEDTP GQYL+AEV DG FGRDV+EFLV+GDV AYR +ATKVTYVYPFTTALGDSKGQE
Sbjct: 289 VVEDTPNGQYLQAEVDDGGFGRDVLEFLVKGDVVAYRSIATKVTYVYPFTTALGDSKGQE 348

Query: 214 ERMRKIIDQLHWYSPTFDSMD 232
           ERM+KIIDQL WY+P+FD+MD
Sbjct: 349 ERMKKIIDQLGWYAPSFDTMD 369

The following BLAST results are available for this feature:

BLAST of CsGy1G009670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004154123.1	1.6e-127	100.00	PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus] >...	[more]
XP_008439847.1	2.6e-122	96.14	PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo]	[more]
XP_023542750.1	1.6e-103	83.05	thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo sub...	[more]
XP_022994453.1	7.9e-103	82.63	thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita maxima]	[more]
XP_022955221.1	1.1e-101	82.20	thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita moschata...	[more]

BLAST of CsGy1G009670 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G24930.1	2.1e-65	67.74	thylakoid lumenal 17.9 kDa protein, chloroplast	[more]

BLAST of CsGy1G009670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SW33\|TL1Y_ARATH	3.8e-64	67.74	Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]

BLAST of CsGy1G009670 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRK9\|A0A0A0LRK9_CUCSA	1.0e-127	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1	[more]
tr\|A0A1S3AZP3\|A0A1S3AZP3_CUCME	1.7e-122	96.14	thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A2I4F007\|A0A2I4F007_9ROSI	4.4e-78	77.16	thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Juglans regia OX=51240 GN=L...	[more]
tr\|A0A2C9UJ46\|A0A2C9UJ46_MANES	9.9e-78	75.51	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G050500 PE=4 SV=...	[more]
tr\|A0A2P4HPZ1\|A0A2P4HPZ1_QUESU	3.8e-77	77.11	Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Quercus suber OX=58331 GN=C...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR037734	Thylakoid_lumenal_17.9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0031977	thylakoid lumen
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G009670.1	CsGy1G009670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
IPR037734	Thylakoid lumenal 17.9kDa protein	PANTHER	PTHR36783	FAMILY NOT NAMED	coord: 35..231

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G009670	Cla002626	Watermelon (97103) v1	cgybwmB010
CsGy1G009670	Csa1G050570	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G009670	MELO3C002367	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G009670	ClCG03G003830	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G009670	CSPI01G09620	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G009670	CmaCh18G003130	Cucurbita maxima (Rimu)	cgybcmaB093
CsGy1G009670	CmoCh18G002230	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G009670	Lsi02G005110	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G009670	Cp4.1LG09g09640	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G009670	MELO3C002367.2	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G009670	CsaV3_1G009730	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G009670	Cla97C03G054960	Watermelon (97103) v2	cgybwmbB032
CsGy1G009670	Bhi08G001234	Wax gourd	cgybwgoB029
CsGy1G009670	Carg06801	Silver-seed gourd	carcgybB0500

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G009670	Cucumber (Chinese Long) v3	cgybcucB010
CsGy1G009670	Watermelon (97103) v2	cgybwmbB070
CsGy1G009670	Cucumber (Gy14) v2	cgybcgybB005
CsGy1G009670	Cucurbita maxima (Rimu)	cgybcmaB025
CsGy1G009670	Cucurbita maxima (Rimu)	cgybcmaB049
CsGy1G009670	Cucurbita maxima (Rimu)	cgybcmaB063
CsGy1G009670	Cucurbita moschata (Rifu)	cgybcmoB026
CsGy1G009670	Cucurbita moschata (Rifu)	cgybcmoB046
CsGy1G009670	Cucurbita moschata (Rifu)	cgybcmoB058
CsGy1G009670	Cucurbita pepo (Zucchini)	cgybcpeB049
CsGy1G009670	Cucurbita pepo (Zucchini)	cgybcpeB080
CsGy1G009670	Cucurbita pepo (Zucchini)	cgybcpeB123
CsGy1G009670	Cucumber (Chinese Long) v2	cgybcuB014
CsGy1G009670	Bottle gourd (USVL1VR-Ls)	cgyblsiB064
CsGy1G009670	Melon (DHL92) v3.5.1	cgybmeB046
CsGy1G009670	Melon (DHL92) v3.6.1	cgybmedB041
CsGy1G009670	Watermelon (Charleston Gray)	cgybwcgB069
CsGy1G009670	Watermelon (97103) v1	cgybwmB087
CsGy1G009670	Wild cucumber (PI 183967)	cgybcpiB013
CsGy1G009670	Silver-seed gourd	carcgybB0373
CsGy1G009670	Silver-seed gourd	carcgybB0989