Carg06801 (gene) Silver-seed gourd

Overview
NameCarg06801
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionthylakoid lumenal 17.9 kDa protein, chloroplastic
LocationCucurbita_argyrosperma_scaffold_012 : 1084128 .. 1086294 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCGCTCCATTTTCGCCCCGCCCTGGTTTCGCCATGGAAGAAGAAGAAGAACAACAACCAGTTCCTCTCTGCCGTCCTCAATCGAACCTCTCCTCCTTCCATGGCGGCTCTTCCAAATCCAAACCACAAACCAATTTTCATCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTTACTTCGCCATTTCCTTCCCTCGCAATCCCTTCCTTCAACTCCCTCTCCTCTCCCCTTTCTCCCACCACTCCCTTTTCTCAATCCAAGGACTTACCAATCGGACTTGAAAACGGGTACGCTCTCAGTTCTTCTCTTTAATCTCTGCATTTCTTCTGTAATTTCTCTTGATTGTCTCGCTCACAGCATGAACTGTCGCCAATTTCTTTCTGCCCTAATTTTGCATTCGTTTTCTTAACTGAATCATTGATAATTTAGCTAAATGTTGTCTTGACATTGCAGTAAGATTAGGCCCTGTCCTTCAACCAATCCGTCGTGTGTTTCTACAAATCCCAAATCGTCATCGTTTGCTTTCCCTTTAAGCATTCCTGAGAGTTATACTGGGAATCCGATTCAGGTTTTAGTTCGCTTAAAGCTCTGTATCACTTGCTTGAATGCTGGTTTACGTTAGTGGCTTCTTATAGTGTTGTCTTTCATGATTCTGCTCTACTTCGTTTATTTGCAGAAGCTGCAGGAAGTGATCCTTGAAACGCAGAGGAATGCAAAGATTCAGATGGTGGAAGATACCCCATATGGTAATTGAACTGAAATTATCAATAGTTTATTTGAAATTTACATTACAAATTGATATACCTCCTTATGTTCTAATTGAACTGCTGAGATAGAAATGAGAATGGACTCTGTTTATTAGTGAGCCAACCCATCTGGCTTGTTCTTTTGAATTTCGTAGTGTTTTGACATAGTGACAGAAGTGAATCCTTGTTTTGATCCCGAAACACTTAAGAACGTAGTTAATAGGTCCTTAAACTTTCAAGGTGACATCTCGTAAGTTTCTAAACCGTAAAAAGTGTCTAATGAATGGAACGGTTCACGTTTCACGTTTCAAGTTTGTGTTTAAACTTTAAAAGTCTCGAAAATCATGTACATTTGGCACAAAAGCGAAAGTTTGTTTGTTACCTTTTAAATACAAAATCACTTTTAGTTCATAAGTGTGAGATCCCACGTCGGTTGGAGAGGGGAATGAAGCATTCCTTATAAGAGTGTGGAAACCTCTTCCTAGTAGACACGTTTTAAAATTGTGAGGTTGACGGCAATATGTAACGGGTCATAGCGGATAATATCTGCTAGCAGTGGGCTTGGGTTGTTACAAATGGTATCAGAGCCAAACACTGGGAGGTGTGCTAGCAAGGACGCTGGGTCCCAAGGGTGGTAGATTCTGAGACCCCACATTGGTTGGAGAGGAGAACGAAACATTCCTTATAAAGATGTGGAAACCTCTCTCTAGCAGACGTGTTTTAAAACTGTGAGGCTGATGCCGATACGTAACGGGTCAAAGCGGATAATATCTGTTAGCGGTGGCCTTGAGCTATTACAATAAGCCTATTAAATGTTTTTGTAGTTCAAGAACTCATTAGAAGGCATAAATTTCATACAATTTAGCTTGAATCCCATGGGATGTCACTTCCTCTCGTGTAGATCTCATGTTAATATCTCGAGCGTAACGCATAAGATAGAGATCCTTATACAAGAACATGCAGGTCAGTACATGGAAGCTGAGGTTGATGGGAACTTTGGGCGGGACGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCTTACAGGATAATGGCAGCAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGCATGAAGAAGATCATAGAGGAGTTGGATTGGTATTCTCCAACCTTTGAATCTATGGTTGACTAATCCAAATCCTGTTTGTTTCTTCTATATTCTTTGTTTTCTTCCCATTCCTTTGTAGTCACTACACTTGAGGAGCTCATATGTATGATCAGCTCGAGTTTAGCTCGGTTCAATTGGTTAAGACATCTTCCAAAAGTTGTATTACTATTTTTGACATTTGATTCATGTTTCAAAACTACCCTTGAAGTGAAAATACACGTCGGAATGAATGTCAGGTTTTTCAAACTG

mRNA sequence

ATGAGTTCGCTCCATTTTCGCCCCGCCCTGGTTTCGCCATGGAAGAAGAAGAAGAACAACAACCAGTTCCTCTCTGCCGTCCTCAATCGAACCTCTCCTCCTTCCATGGCGGCTCTTCCAAATCCAAACCACAAACCAATTTTCATCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTTACTTCGCCATTTCCTTCCCTCGCAATCCCTTCCTTCAACTCCCTCTCCTCTCCCCTTTCTCCCACCACTCCCTTTTCTCAATCCAAGGACTTACCAATCGGACTTGAAAACGGTAAGATTAGGCCCTGTCCTTCAACCAATCCGTCGTGTGTTTCTACAAATCCCAAATCGTCATCGTTTGCTTTCCCTTTAAGCATTCCTGAGAGTTATACTGGGAATCCGATTCAGAAGCTGCAGGAAGTGATCCTTGAAACGCAGAGGAATGCAAAGATTCAGATGGTGGAAGATACCCCATATGGTCAGTACATGGAAGCTGAGGTTGATGGGAACTTTGGGCGGGACGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCTTACAGGATAATGGCAGCAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGCATGAAGAAGATCATAGAGGAGTTGGATTGGTATTCTCCAACCTTTGAATCTATGGTTGACTAATCCAAATCCTGTTTGTTTCTTCTATATTCTTTGTTTTCTTCCCATTCCTTTGTAGTCACTACACTTGAGGAGCTCATATGTATGATCAGCTCGAGTTTAGCTCGGTTCAATTGGTTAAGACATCTTCCAAAAGTTGTATTACTATTTTTGACATTTGATTCATGTTTCAAAACTACCCTTGAAGTGAAAATACACGTCGGAATGAATGTCAGGTTTTTCAAACTG

Coding sequence (CDS)

ATGAGTTCGCTCCATTTTCGCCCCGCCCTGGTTTCGCCATGGAAGAAGAAGAAGAACAACAACCAGTTCCTCTCTGCCGTCCTCAATCGAACCTCTCCTCCTTCCATGGCGGCTCTTCCAAATCCAAACCACAAACCAATTTTCATCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTTACTTCGCCATTTCCTTCCCTCGCAATCCCTTCCTTCAACTCCCTCTCCTCTCCCCTTTCTCCCACCACTCCCTTTTCTCAATCCAAGGACTTACCAATCGGACTTGAAAACGGTAAGATTAGGCCCTGTCCTTCAACCAATCCGTCGTGTGTTTCTACAAATCCCAAATCGTCATCGTTTGCTTTCCCTTTAAGCATTCCTGAGAGTTATACTGGGAATCCGATTCAGAAGCTGCAGGAAGTGATCCTTGAAACGCAGAGGAATGCAAAGATTCAGATGGTGGAAGATACCCCATATGGTCAGTACATGGAAGCTGAGGTTGATGGGAACTTTGGGCGGGACGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCTTACAGGATAATGGCAGCAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGCATGAAGAAGATCATAGAGGAGTTGGATTGGTATTCTCCAACCTTTGAATCTATGGTTGACTAA

Protein sequence

MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSSFAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Homology
[Close]
BLAST of Carg06801 vs. NCBI nr
Match: XP_022955221.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 459.9 bits (1182), Expect = 5.1e-126
Identity = 231/234 (98.72%), Postives = 232/234 (99.15%), Query Frame = 0 

Query: 1   MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKKKK NNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120

Query: 121 FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
           FAF LSIPES+TGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]
BLAST of Carg06801 vs. NCBI nr
Match: XP_023542750.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 458.0 bits (1177), Expect = 1.9e-125
Identity = 230/234 (98.29%), Postives = 231/234 (98.72%), Query Frame = 0 

Query: 1   MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKKK NNNQFLSAVLNRTSPPSMAALPN NHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPS NPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSS 120

Query: 121 FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
           FAFPLSIPES+TGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]
BLAST of Carg06801 vs. NCBI nr
Match: XP_022994453.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 457.6 bits (1176), Expect = 2.5e-125
Identity = 229/234 (97.86%), Postives = 230/234 (98.29%), Query Frame = 0 

Query: 1   MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKK  NNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKNNNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKD PIGLENGKIRPCPS NPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDFPIGLENGKIRPCPSINPSCVSTNPKSSS 120

Query: 121 FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
           FAFPLSIPES+TGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]
BLAST of Carg06801 vs. NCBI nr
Match: XP_022955220.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 452.6 bits (1163), Expect = 8.2e-124
Identity = 231/242 (95.45%), Postives = 232/242 (95.87%), Query Frame = 0 

Query: 1   MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKKKK NNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120

Query: 121 FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPY--------GQYMEAEVDGNF 180
           FAF LSIPES+TGNPIQKLQEVILETQRNAKIQMVEDTPY        GQYMEAEVDGNF
Sbjct: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYEILIQEHAGQYMEAEVDGNF 180

Query: 181 GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM 235
           GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM
Sbjct: 181 GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM 240

[Close]
BLAST of Carg06801 vs. NCBI nr
Match: XP_023542749.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 450.7 bits (1158), Expect = 3.1e-123
Identity = 230/242 (95.04%), Postives = 231/242 (95.45%), Query Frame = 0 

Query: 1   MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKKK NNNQFLSAVLNRTSPPSMAALPN NHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPS NPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSS 120

Query: 121 FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPY--------GQYMEAEVDGNF 180
           FAFPLSIPES+TGNPIQKLQEVILETQRNAKIQMVEDTPY        GQYMEAEVDGNF
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYEILMQEHAGQYMEAEVDGNF 180

Query: 181 GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM 235
           GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM
Sbjct: 181 GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM 240

[Close]
BLAST of Carg06801 vs. TAIR10
Match: AT4G24930.1 (thylakoid lumenal 17.9 kDa protein, chloroplast)

HSP 1 Score: 245.0 bits (624), Expect = 4.7e-65
Identity = 132/206 (64.08%), Postives = 163/206 (79.13%), Query Frame = 0 

Query: 28  LNRTSPPSMAALPNPNHKPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFS 87
           L+ TSPP ++ LP           L+SFAL+I+LTS  P+LAIPS +S S PL  TTPF+
Sbjct: 33  LSSTSPP-ISLLPK----------LISFALAISLTSFSPALAIPSLSS-SQPL--TTPFT 92

Query: 88  QSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSSFAFPLSIPESYTGNPIQKLQEVILETQ 147
           QSK +  GL NGKIRPCPSTNP CVSTNP SSSF+FPL+IPE+ T +PI+KL+E I+ TQ
Sbjct: 93  QSKFVQTGLLNGKIRPCPSTNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQ 152

Query: 148 RNAKIQMVEDTPYGQYMEAEVD-GNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALG 207
           +N K  ++EDTPYG+Y+EAEV+ G F RDV+EFLV+ DV AYR MA KVT+VYPFTTA G
Sbjct: 153 KNPKFVVLEDTPYGRYVEAEVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFG 212

Query: 208 DSKGQEERMKKIIEELDWYSPTFESM 233
           DSKGQEER+KK+I++L WY+PTFESM
Sbjct: 213 DSKGQEERLKKLIDQLGWYAPTFESM 224

[Close]
BLAST of Carg06801 vs. Swiss-Prot
Match: sp|Q9SW33|TL1Y_ARATH (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g24930 PE=1 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 8.4e-64
Identity = 132/206 (64.08%), Postives = 163/206 (79.13%), Query Frame = 0 

Query: 28  LNRTSPPSMAALPNPNHKPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFS 87
           L+ TSPP ++ LP           L+SFAL+I+LTS  P+LAIPS +S S PL  TTPF+
Sbjct: 33  LSSTSPP-ISLLPK----------LISFALAISLTSFSPALAIPSLSS-SQPL--TTPFT 92

Query: 88  QSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSSFAFPLSIPESYTGNPIQKLQEVILETQ 147
           QSK +  GL NGKIRPCPSTNP CVSTNP SSSF+FPL+IPE+ T +PI+KL+E I+ TQ
Sbjct: 93  QSKFVQTGLLNGKIRPCPSTNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQ 152

Query: 148 RNAKIQMVEDTPYGQYMEAEVD-GNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALG 207
           +N K  ++EDTPYG+Y+EAEV+ G F RDV+EFLV+ DV AYR MA KVT+VYPFTTA G
Sbjct: 153 KNPKFVVLEDTPYGRYVEAEVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFG 212

Query: 208 DSKGQEERMKKIIEELDWYSPTFESM 233
           DSKGQEER+KK+I++L WY+PTFESM
Sbjct: 213 DSKGQEERLKKLIDQLGWYAPTFESM 224

[Close]
BLAST of Carg06801 vs. TrEMBL
Match: tr|A0A1S3AZP3|A0A1S3AZP3_CUCME (thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484512 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 5.6e-105
Identity = 198/237 (83.54%), Postives = 214/237 (90.30%), Query Frame = 0 

Query: 1   MSSLHFRPALVSPWKKKKNN---NQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFAL 60
           MSSL FRP LVSPWKKK NN   NQ+ S V    S PSM+AL N NHKPIF+SHLLSFAL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPV----SVPSMSALQNVNHKPIFLSHLLSFAL 60

Query: 61  SITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPK 120
           SITLTSPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPSTNPSCVSTNPK
Sbjct: 61  SITLTSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPK 120

Query: 121 SSSFAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVI 180
           SSSFAFPL+IP++++GNPIQKLQE ILETQRN KIQMVEDTPYGQY+EAEVDGNFGRDVI
Sbjct: 121 SSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVI 180

Query: 181 EFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           EFLV+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 EFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

[Close]
BLAST of Carg06801 vs. TrEMBL
Match: tr|A0A0A0LRK9|A0A0A0LRK9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.1e-103
Identity = 195/236 (82.63%), Postives = 212/236 (89.83%), Query Frame = 0 

Query: 1   MSSLHFRPALVSPWKKKKNN--NQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALS 60
           MSSL FRP LVSPWKKK NN  NQ+ S V    S PSM+ L N NHKPIF+SHLLSFALS
Sbjct: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPV----SVPSMSTLQNANHKPIFLSHLLSFALS 60

Query: 61  ITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKS 120
           ITL+SPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPS NPSCVSTNPKS
Sbjct: 61  ITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKS 120

Query: 121 SSFAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIE 180
           SSFAFPL+IP++++GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIE
Sbjct: 121 SSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIE 180

Query: 181 FLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           FLVRGDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 FLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232

[Close]
BLAST of Carg06801 vs. TrEMBL
Match: tr|A0A067JIF3|A0A067JIF3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26439 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 6.5e-77
Identity = 147/195 (75.38%), Postives = 170/195 (87.18%), Query Frame = 0 

Query: 38  ALPNPNHKPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLE 97
           +L  P  KPI +++LLS AL++TL SP PSLAIPS NSLSSP+ PTTPFSQSK+L +G E
Sbjct: 33  SLEIPTPKPILLTNLLSLALTVTLNSPLPSLAIPSPNSLSSPVIPTTPFSQSKNLILGPE 92

Query: 98  NGKIRPCPSTNPSCVSTNPKSSSFAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVED 157
           +GKIRPCPSTNPSCVSTNPKSSSFAFPL+IP+  T N IQKLQE IL+TQRNAKIQ++ED
Sbjct: 93  DGKIRPCPSTNPSCVSTNPKSSSFAFPLTIPDDSTDNAIQKLQEAILKTQRNAKIQVIED 152

Query: 158 TPYGQYMEAEVDGNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKK 217
            P G Y++AEVDG FGRDV+EFLV+GDV AYR MA KVTYVYPFTTALGDSKGQEERMKK
Sbjct: 153 APNGTYLQAEVDGGFGRDVLEFLVKGDVVAYRCMATKVTYVYPFTTALGDSKGQEERMKK 212

Query: 218 IIEELDWYSPTFESM 233
           IIE+L WY+P+F+SM
Sbjct: 213 IIEQLGWYAPSFDSM 227

[Close]
BLAST of Carg06801 vs. TrEMBL
Match: tr|A0A2C9UJ46|A0A2C9UJ46_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G050500 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 1.9e-76
Identity = 146/195 (74.87%), Postives = 169/195 (86.67%), Query Frame = 0 

Query: 38  ALPNPNHKPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLE 97
           +L NP  KPI  ++L+S AL+ TL SP PSLAIPS NSLS  L PTTPFS+SK+LPIGLE
Sbjct: 34  SLQNPALKPILFTNLVSLALTFTLNSPLPSLAIPSPNSLSPLLPPTTPFSESKNLPIGLE 93

Query: 98  NGKIRPCPSTNPSCVSTNPKSSSFAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVED 157
           +GKIRPCPS NPSCVSTNPKSSSFAFPL IP+S T N IQKLQE IL+TQ+N KI+++ED
Sbjct: 94  DGKIRPCPSINPSCVSTNPKSSSFAFPLRIPDSTTENAIQKLQEAILKTQKNPKIRVIED 153

Query: 158 TPYGQYMEAEVDGNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKK 217
           TP GQY++AEVDG FG+DV+EFLV+GDV AYR MA KVTYVYPFTTA GDSKGQEERMKK
Sbjct: 154 TPNGQYLQAEVDGGFGQDVLEFLVKGDVVAYRCMATKVTYVYPFTTAFGDSKGQEERMKK 213

Query: 218 IIEELDWYSPTFESM 233
           II++LDWY+P+FESM
Sbjct: 214 IIDQLDWYAPSFESM 228

[Close]
BLAST of Carg06801 vs. TrEMBL
Match: tr|A0A2I4F007|A0A2I4F007_9ROSI (thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Juglans regia OX=51240 GN=LOC108994291 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 3.5e-75
Identity = 152/217 (70.05%), Postives = 173/217 (79.72%), Query Frame = 0 

Query: 28  LNRTSPPSMAA-------LPN-----PNHKPIFISHLLSFALSITLTSPFPSLAIPSFNS 87
           L+ TS PS A        +P      PN KPI +S LLS AL+ TL+SP PSLAIPS NS
Sbjct: 11  LSSTSKPSSATKTSLCLQIPEATFQIPNPKPILLSKLLSLALAATLSSPLPSLAIPSLNS 70

Query: 88  LSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSSFAFPLSIPESYTGNP 147
            SS LSPTTPFSQSK+L  GLENGKIRPCPSTNP CVSTNPKSSSFAFP  IPE+ T N 
Sbjct: 71  QSSLLSPTTPFSQSKNLQTGLENGKIRPCPSTNPGCVSTNPKSSSFAFPWRIPENSTNNA 130

Query: 148 IQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFLVRGDVAAYRIMAAKV 207
           +QKLQE IL+TQ+NAKIQ+VEDTP GQY++AE+DG F RDV+EFLV+GDV AYR MA KV
Sbjct: 131 VQKLQEAILKTQKNAKIQVVEDTPNGQYLQAEIDGGFDRDVLEFLVKGDVVAYRSMATKV 190

Query: 208 TYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM 233
           TYVYPFTTALGDSKGQEERMKKI + L WY+P+F++M
Sbjct: 191 TYVYPFTTALGDSKGQEERMKKIKDLLGWYAPSFDAM 227

The following BLAST results are available for this feature:
BLAST of Carg06801 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022955221.15.1e-12698.72thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita moschata... [more]
XP_023542750.11.9e-12598.29thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo sub... [more]
XP_022994453.12.5e-12597.86thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita maxima][more]
XP_022955220.18.2e-12495.45thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 [Cucurbita moschata... [more]
XP_023542749.13.1e-12395.04thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 [Cucurbita pepo sub... [more]
BLAST of Carg06801 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G24930.14.7e-6564.08thylakoid lumenal 17.9 kDa protein, chloroplast[more]
BLAST of Carg06801 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SW33|TL1Y_ARATH8.4e-6464.08Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370... [more]
BLAST of Carg06801 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AZP3|A0A1S3AZP3_CUCME5.6e-10583.54thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A0A0LRK9|A0A0A0LRK9_CUCSA1.1e-10382.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1[more]
tr|A0A067JIF3|A0A067JIF3_JATCU6.5e-7775.38Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26439 PE=4 SV=1[more]
tr|A0A2C9UJ46|A0A2C9UJ46_MANES1.9e-7674.87Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G050500 PE=4 SV=... [more]
tr|A0A2I4F007|A0A2I4F007_9ROSI3.5e-7570.05thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Juglans regia OX=51240 GN=L... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR037734Thylakoid_lumenal_17.9
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06801-RACarg06801-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037734Thylakoid lumenal 17.9kDa proteinPANTHERPTHR36783FAMILY NOT NAMEDcoord: 41..232

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg06801Cla002626Watermelon (97103) v1carwmB0489
Carg06801Csa1G050570Cucumber (Chinese Long) v2carcuB0523
Carg06801MELO3C002367Melon (DHL92) v3.5.1carmeB0499
Carg06801ClCG03G003830Watermelon (Charleston Gray)carwcgB0480
Carg06801CSPI01G09620Wild cucumber (PI 183967)carcpiB0531
Carg06801Cucsa.392140Cucumber (Gy14) v1carcgyB0571
Carg06801CmaCh18G003130Cucurbita maxima (Rimu)carcmaB0693
Carg06801CmoCh18G002230Cucurbita moschata (Rifu)carcmoB0673
Carg06801Lsi02G005110Bottle gourd (USVL1VR-Ls)carlsiB447
Carg06801Cp4.1LG09g09640Cucurbita pepo (Zucchini)carcpeB0694
Carg06801CsGy1G009670Cucumber (Gy14) v2carcgybB0500
Carg06801MELO3C002367.2Melon (DHL92) v3.6.1carmedB0504
Carg06801CsaV3_1G009730Cucumber (Chinese Long) v3carcucB0529
Carg06801Cla97C03G054960Watermelon (97103) v2carwmbB0517
Carg06801Bhi08G001234Wax gourdcarwgoB0602
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg06801Silver-seed gourdcarcarB390
Carg06801Silver-seed gourdcarcarB481
Carg06801Cucurbita maxima (Rimu)carcmaB0686
Carg06801Cucurbita maxima (Rimu)carcmaB0688
Carg06801Cucurbita maxima (Rimu)carcmaB0689
Carg06801Cucurbita moschata (Rifu)carcmoB0668
Carg06801Cucurbita moschata (Rifu)carcmoB0669
Carg06801Cucurbita moschata (Rifu)carcmoB0670
Carg06801Cucurbita pepo (Zucchini)carcpeB0695
Carg06801Cucurbita pepo (Zucchini)carcpeB0698
Carg06801Cucurbita pepo (Zucchini)carcpeB0699
Carg06801Watermelon (Charleston Gray)carwcgB0483
Carg06801Watermelon (97103) v1carwmB0495
Carg06801Watermelon (97103) v2carwmbB0521