Cp4.1LG09g09640 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g09640
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionThylakoid lumenal 17.9 kDa protein
LocationCp4.1LG09 : 8558921 .. 8561277 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCGGCAATGCGATTGAGGAACAGAACGAAACATGAGTTCGCTCCATTTTCGCCCCGCCCTGGTTTCGCCATGGAAGAAGAAGAGCAACAACAACCAGTTCCTCTCCGCCGTGCTCAATCGAACCTCTCCTCCTTCCATGGCGGCTCTTCCAAATTCAAATCACAAACCAATTTTCATCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTCACTTCGCCATTTCCTTCCCTCGCAATCCCTTCCTTCAACTCCCTCTCCTCTCCCCTTTCTCCCACCACTCCTTTTTCTCAATCCAAGGACTTACCAATCGGACTTGAAAACGGGTACGCTCTCAATTCTTCTCGTTAATCTCTGCATTTCTTCTGTAATTTCTCTTGATTGTCTCGCTCACAGCATGAACTATCGCCAATTTCTTTCTGCCCTAATTTTGCATTCGTCTTCTTAACTGAACCATTGATAATTTAGCTACATGTTGTCTTGATATTGCAGGAAGATTAGACCCTGTCCTTCAATCAATCCGTCGTGTGTTTCTACAAACCCCAAATCGTCATCGTTTGCTTTCCCTTTAAGCATTCCTGAGAGTTTTACTGGGAATCCGATTCAGGTTTTAGTTCTCTTAAAGCTCTGTATCACTTGCTTGAATGTTGTTTTACGTTAGTGGCTTCTTATAGTGTTGTCTTTCATGATTCTGCTCTACTTCGTTTATTTGCAGAAGCTGCAGGAAGTGATCCTTGAAACGCAGAGGAATGCAAAGATTCAGATGGTGGAAGATACCCCATATGGTAATTGAACTGAAATTATCAATAGTTTATTTGAAATTTACATTACAAATTGATATACCTCCCTATGTTCTTATTGAACTGCTGAGATAGAGATGAGATTGGACTCTGTTTATTAGTAAGCCAACCTATCTAGGTTATTCTTTTGAATTTCGTAGTGTTTTGACATAGTGATAGAAGTGAATCCTTGTTTTGATCCCGAAACACTTAAAAACGTAGCTAATAGGTCCTTAAACTTTCAAGGTGACATCTCGTAAGTTTCTAAACCGTAAAAAGTGTCCAATGAATGGAACTGTTCATGTTTCAAGTTTGTGTTCAAACTTTAAAAGTCTCGAAAATCATGTACATTTGGCACAAAAGCGAAAGTTTGTTTGTTACCTATTAAATACAAAATCACTTTTTAGTTTATAAGTGTGAGATCCCACGTCGGTTGGAGAGGAGAACAAAGCATTCTTTATAAGAGTGTGGAAACCTCTTCCTAGTAGACACGTTTTAAAACTGTGAGGCTGACGGCGATGCGTAACCGGCCATAGCGGACAATATCTACTAGCAGTCGGCTTGAGCTGTTACAAATGGTATCAGAGTCAAAAACACTGGGAGGTGTGCTAGGAAGGACGCGGCGTCCCAATGGAGTAGATTTTGAGATTCCACATTGGTTGGAGAGGAGAACAAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGTGTTTTAAAACCGTGAGGCTGATGACGATACATAACGGGTCAAAGCGGATAATATCTCTTAGCGGTGGCCGTGGGCTGTTACAATAAGCCTATTAAATGTTTTTGTAGTTCAAGAACTTATTAGACATAAAGTTCGTACAATTTTACTTGAATCCCATGTGATTTCACTTCCTCTCGTGTATATCTCATGTTAACATCTCGAGCCTAACGCATAAGATAGAGTTCCTTACCCTATTAAGCTCGTGAGCCTATTAGATATTTTTTGTAGTTCAAGAACTTATTAGAAGACATAAATTTCGTACAATTTAGCTTGAATCCCATGAGATGTCACTTCCTCTCATGTAGATCTCATGTTAATATCTCGAGCGTAACGCATAAGATAGAGATCCTTATGCAAGAACATGCAGGTCAGTACATGGAAGCTGAGGTTGATGGGAACTTTGGGCGGGACGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCTTACAGGATAATGGCAGCAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGAATGAAGAAGATCATAGAAGAGTTGGATTGGTATTCTCCAACCTTTGAATCTATGGTTGACTAATCCAAATCCTGTTTGTTTCTTCTATATTCTTTGTTTTCTTCCCATTCCTTTGTAGTCACTACACTTGATGAGCTCATATGTATGATAGAGCTCGAGTTTAGCTCGGTTCCATTGGTTAAGACATCTTCCAAAAGTTGTATTATTATTCTTGACATTCGATTAATGTTTCAAAACTACCCTTGAAGTGAAAATACACATGTCTGAATGTCTTGTTTTTTCAGACAAGCA

mRNA sequence

GGCGGCAATGCGATTGAGGAACAGAACGAAACATGAGTTCGCTCCATTTTCGCCCCGCCCTGGTTTCGCCATGGAAGAAGAAGAGCAACAACAACCAGTTCCTCTCCGCCGTGCTCAATCGAACCTCTCCTCCTTCCATGGCGGCTCTTCCAAATTCAAATCACAAACCAATTTTCATCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTCACTTCGCCATTTCCTTCCCTCGCAATCCCTTCCTTCAACTCCCTCTCCTCTCCCCTTTCTCCCACCACTCCTTTTTCTCAATCCAAGGACTTACCAATCGGACTTGAAAACGGGAAGATTAGACCCTGTCCTTCAATCAATCCGTCGTGTGTTTCTACAAACCCCAAATCGTCATCGTTTGCTTTCCCTTTAAGCATTCCTGAGAGTTTTACTGGGAATCCGATTCAGAAGCTGCAGGAAGTGATCCTTGAAACGCAGAGGAATGCAAAGATTCAGATGGTGGAAGATACCCCATATGGTCAGTACATGGAAGCTGAGGTTGATGGGAACTTTGGGCGGGACGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCTTACAGGATAATGGCAGCAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGAATGAAGAAGATCATAGAAGAGTTGGATTGGTATTCTCCAACCTTTGAATCTATGGTTGACTAATCCAAATCCTGTTTGTTTCTTCTATATTCTTTGTTTTCTTCCCATTCCTTTGTAGTCACTACACTTGATGAGCTCATATGTATGATAGAGCTCGAGTTTAGCTCGGTTCCATTGGTTAAGACATCTTCCAAAAGTTGTATTATTATTCTTGACATTCGATTAATGTTTCAAAACTACCCTTGAAGTGAAAATACACATGTCTGAATGTCTTGTTTTTTCAGACAAGCA

Coding sequence (CDS)

ATGAGTTCGCTCCATTTTCGCCCCGCCCTGGTTTCGCCATGGAAGAAGAAGAGCAACAACAACCAGTTCCTCTCCGCCGTGCTCAATCGAACCTCTCCTCCTTCCATGGCGGCTCTTCCAAATTCAAATCACAAACCAATTTTCATCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTCACTTCGCCATTTCCTTCCCTCGCAATCCCTTCCTTCAACTCCCTCTCCTCTCCCCTTTCTCCCACCACTCCTTTTTCTCAATCCAAGGACTTACCAATCGGACTTGAAAACGGGAAGATTAGACCCTGTCCTTCAATCAATCCGTCGTGTGTTTCTACAAACCCCAAATCGTCATCGTTTGCTTTCCCTTTAAGCATTCCTGAGAGTTTTACTGGGAATCCGATTCAGAAGCTGCAGGAAGTGATCCTTGAAACGCAGAGGAATGCAAAGATTCAGATGGTGGAAGATACCCCATATGGTCAGTACATGGAAGCTGAGGTTGATGGGAACTTTGGGCGGGACGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCTTACAGGATAATGGCAGCAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGAATGAAGAAGATCATAGAAGAGTTGGATTGGTATTCTCCAACCTTTGAATCTATGGTTGACTAA

Protein sequence

MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Homology
[Close]
BLAST of Cp4.1LG09g09640 vs. Swiss-Prot
Match: TL1Y_ARATH (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At4g24930 PE=1 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.2e-63
Identity = 131/206 (63.59%), Postives = 162/206 (78.64%), Query Frame = 1 

Query: 28  LNRTSPPSMAALPNSNHKPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFS 87
           L+ TSPP ++ LP           L+SFAL+I+LTS  P+LAIPS +S S PL  TTPF+
Sbjct: 33  LSSTSPP-ISLLPK----------LISFALAISLTSFSPALAIPSLSS-SQPL--TTPFT 92

Query: 88  QSKDLPIGLENGKIRPCPSINPSCVSTNPKSSSFAFPLSIPESFTGNPIQKLQEVILETQ 147
           QSK +  GL NGKIRPCPS NP CVSTNP SSSF+FPL+IPE+ T +PI+KL+E I+ TQ
Sbjct: 93  QSKFVQTGLLNGKIRPCPSTNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQ 152

Query: 148 RNAKIQMVEDTPYGQYMEAEVD-GNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALG 207
           +N K  ++EDTPYG+Y+EAEV+ G F RDV+EFLV+ DV AYR MA KVT+VYPFTTA G
Sbjct: 153 KNPKFVVLEDTPYGRYVEAEVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFG 212

Query: 208 DSKGQEERMKKIIEELDWYSPTFESM 233
           DSKGQEER+KK+I++L WY+PTFESM
Sbjct: 213 DSKGQEERLKKLIDQLGWYAPTFESM 224

[Close]
BLAST of Cp4.1LG09g09640 vs. TrEMBL
Match: A0A0A0LRK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050570 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 1.5e-104
Identity = 196/236 (83.05%), Postives = 213/236 (90.25%), Query Frame = 1 

Query: 1   MSSLHFRPALVSPWKKKSNNN--QFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALS 60
           MSSL FRP LVSPWKKK NNN  Q+ S V    S PSM+ L N+NHKPIF+SHLLSFALS
Sbjct: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPV----SVPSMSTLQNANHKPIFLSHLLSFALS 60

Query: 61  ITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKS 120
           ITL+SPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPS NPSCVSTNPKS
Sbjct: 61  ITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKS 120

Query: 121 SSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIE 180
           SSFAFPL+IP++F+GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIE
Sbjct: 121 SSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIE 180

Query: 181 FLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           FLVRGDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 FLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232

[Close]
BLAST of Cp4.1LG09g09640 vs. TrEMBL
Match: A0A067JIF3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26439 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 8.6e-76
Identity = 151/221 (68.33%), Postives = 177/221 (80.09%), Query Frame = 1 

Query: 12  SPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSITLTSPFPSLAIP 71
           +P +K S    FL+  L   +P           KPI +++LLS AL++TL SP PSLAIP
Sbjct: 18  NPIQKVSPRFHFLNFSLEIPTP-----------KPILLTNLLSLALTVTLNSPLPSLAIP 77

Query: 72  SFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSSFAFPLSIPESF 131
           S NSLSSP+ PTTPFSQSK+L +G E+GKIRPCPS NPSCVSTNPKSSSFAFPL+IP+  
Sbjct: 78  SPNSLSSPVIPTTPFSQSKNLILGPEDGKIRPCPSTNPSCVSTNPKSSSFAFPLTIPDDS 137

Query: 132 TGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFLVRGDVAAYRIM 191
           T N IQKLQE IL+TQRNAKIQ++ED P G Y++AEVDG FGRDV+EFLV+GDV AYR M
Sbjct: 138 TDNAIQKLQEAILKTQRNAKIQVIEDAPNGTYLQAEVDGGFGRDVLEFLVKGDVVAYRCM 197

Query: 192 AAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM 233
           A KVTYVYPFTTALGDSKGQEERMKKIIE+L WY+P+F+SM
Sbjct: 198 ATKVTYVYPFTTALGDSKGQEERMKKIIEQLGWYAPSFDSM 227

[Close]
BLAST of Cp4.1LG09g09640 vs. TrEMBL
Match: D7SH07_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g01170 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.1e-74
Identity = 142/192 (73.96%), Postives = 165/192 (85.94%), Query Frame = 1 

Query: 41  NSNHKPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGK 100
           NSN +P  + +LLSFAL+++L S   SLA+PS NS SS L PTTPFSQSK+L +GLENGK
Sbjct: 34  NSNTRPFLLPNLLSFALTVSLASSPLSLALPSINSQSSLLPPTTPFSQSKNLQVGLENGK 93

Query: 101 IRPCPSINPSCVSTNPKSSSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPY 160
           IRPCPSINP CVSTNPKSSSFAFPL+IPE ++ N +QKLQE IL+TQRNAKIQ+VEDTP 
Sbjct: 94  IRPCPSINPGCVSTNPKSSSFAFPLTIPEKYSDNAVQKLQETILKTQRNAKIQVVEDTPD 153

Query: 161 GQYMEAEVDGNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIE 220
           GQY+ AEVDG FGRD++EFLV+GDV AYR MA KVTYVYPFTTALGDSKGQEERMKKII+
Sbjct: 154 GQYLRAEVDGGFGRDIMEFLVKGDVVAYRTMATKVTYVYPFTTALGDSKGQEERMKKIID 213

Query: 221 ELDWYSPTFESM 233
            L WY+P+ +SM
Sbjct: 214 LLGWYAPSLDSM 225

[Close]
BLAST of Cp4.1LG09g09640 vs. TrEMBL
Match: B9IFC9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s10960g PE=4 SV=2)

HSP 1 Score: 284.3 bits (726), Expect = 1.4e-73
Identity = 145/226 (64.16%), Postives = 172/226 (76.11%), Query Frame = 1 

Query: 14  WKKKSNNNQFLSAVLNRTSPPSMAALPNSNH-------KPIFISHLLSFALSITLTSPFP 73
           WKK+   N    +++    PP ++    +N        KPI  ++L S AL++TL SP P
Sbjct: 4   WKKERITNVTSMSLIGHVLPPHLSTSKITNFTSQNVTPKPILFTNLFSLALTVTLNSPLP 63

Query: 74  SLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSSFAFPLS 133
           SLAIPS NS    LSPTTPFSQSK+L IGLENGKIRPCPS NP CVSTNP+SSSF+FP  
Sbjct: 64  SLAIPSLNSQPPLLSPTTPFSQSKNLQIGLENGKIRPCPSTNPGCVSTNPQSSSFSFPWR 123

Query: 134 IPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFLVRGDVA 193
           IPE+ T N IQKL+E IL+TQRNAKIQ++EDTP G+Y++AEVDG F  DV+EFLVRGDV 
Sbjct: 124 IPENDTENAIQKLEEAILKTQRNAKIQVIEDTPNGKYLQAEVDGGFDPDVLEFLVRGDVV 183

Query: 194 AYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM 233
           AYR MA KVTYVYPFTTA GDSKGQEERMKKI+ EL WY+P+F+SM
Sbjct: 184 AYRTMATKVTYVYPFTTAFGDSKGQEERMKKILNELGWYAPSFDSM 229

[Close]
BLAST of Cp4.1LG09g09640 vs. TrEMBL
Match: A0A067E7V8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026604mg PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 2.6e-72
Identity = 141/189 (74.60%), Postives = 161/189 (85.19%), Query Frame = 1 

Query: 45  KPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGL-ENGKIRP 104
           KPI +SHLLS AL+ T  SP P LA+PS NS    LSPTTPFSQSK+L +GL E+GKIRP
Sbjct: 47  KPIILSHLLSLALTATFNSPLPCLAVPSVNSQFPLLSPTTPFSQSKNLQLGLQEDGKIRP 106

Query: 105 CPSINPSCVSTNPKSSSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQY 164
           CPS NP CVSTNPKSSSFAFPL IPE+ T N IQKLQE IL+TQ+NAKI +VEDTP+GQY
Sbjct: 107 CPSTNPGCVSTNPKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQY 166

Query: 165 MEAEVDGNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELD 224
           ++AEVDG FGRDV+EFLV+GDV AYR +A KVTYVYPFTTALGDSKGQEERMK+II EL 
Sbjct: 167 LQAEVDGGFGRDVLEFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELG 226

Query: 225 WYSPTFESM 233
           WY+P+F+SM
Sbjct: 227 WYAPSFDSM 235

[Close]
BLAST of Cp4.1LG09g09640 vs. TAIR10
Match: AT4G24930.1 (AT4G24930.1 thylakoid lumenal 17.9 kDa protein, chloroplast)

HSP 1 Score: 243.0 bits (619), Expect = 1.8e-64
Identity = 131/206 (63.59%), Postives = 162/206 (78.64%), Query Frame = 1 

Query: 28  LNRTSPPSMAALPNSNHKPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFS 87
           L+ TSPP ++ LP           L+SFAL+I+LTS  P+LAIPS +S S PL  TTPF+
Sbjct: 33  LSSTSPP-ISLLPK----------LISFALAISLTSFSPALAIPSLSS-SQPL--TTPFT 92

Query: 88  QSKDLPIGLENGKIRPCPSINPSCVSTNPKSSSFAFPLSIPESFTGNPIQKLQEVILETQ 147
           QSK +  GL NGKIRPCPS NP CVSTNP SSSF+FPL+IPE+ T +PI+KL+E I+ TQ
Sbjct: 93  QSKFVQTGLLNGKIRPCPSTNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQ 152

Query: 148 RNAKIQMVEDTPYGQYMEAEVD-GNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALG 207
           +N K  ++EDTPYG+Y+EAEV+ G F RDV+EFLV+ DV AYR MA KVT+VYPFTTA G
Sbjct: 153 KNPKFVVLEDTPYGRYVEAEVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFG 212

Query: 208 DSKGQEERMKKIIEELDWYSPTFESM 233
           DSKGQEER+KK+I++L WY+PTFESM
Sbjct: 213 DSKGQEERLKKLIDQLGWYAPTFESM 224

[Close]
BLAST of Cp4.1LG09g09640 vs. NCBI nr
Match: gi|659067523|ref|XP_008439847.1| (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo])

HSP 1 Score: 388.7 bits (997), Expect = 7.4e-105
Identity = 198/237 (83.54%), Postives = 213/237 (89.87%), Query Frame = 1 

Query: 1   MSSLHFRPALVSPWKKKSNNN---QFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFAL 60
           MSSL FRP LVSPWKKK NNN   Q+ S V    S PSM+AL N NHKPIF+SHLLSFAL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPV----SVPSMSALQNVNHKPIFLSHLLSFAL 60

Query: 61  SITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPK 120
           SITLTSPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPS NPSCVSTNPK
Sbjct: 61  SITLTSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPK 120

Query: 121 SSSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVI 180
           SSSFAFPL+IP++F+GNPIQKLQE ILETQRN KIQMVEDTPYGQY+EAEVDGNFGRDVI
Sbjct: 121 SSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVI 180

Query: 181 EFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           EFLV+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 EFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

[Close]
BLAST of Cp4.1LG09g09640 vs. NCBI nr
Match: gi|449474267|ref|XP_004154123.1| (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 387.1 bits (993), Expect = 2.2e-104
Identity = 196/236 (83.05%), Postives = 213/236 (90.25%), Query Frame = 1 

Query: 1   MSSLHFRPALVSPWKKKSNNN--QFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALS 60
           MSSL FRP LVSPWKKK NNN  Q+ S V    S PSM+ L N+NHKPIF+SHLLSFALS
Sbjct: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPV----SVPSMSTLQNANHKPIFLSHLLSFALS 60

Query: 61  ITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKS 120
           ITL+SPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPS NPSCVSTNPKS
Sbjct: 61  ITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKS 120

Query: 121 SSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIE 180
           SSFAFPL+IP++F+GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIE
Sbjct: 121 SSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIE 180

Query: 181 FLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           FLVRGDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 FLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232

[Close]
BLAST of Cp4.1LG09g09640 vs. NCBI nr
Match: gi|802771103|ref|XP_012090684.1| (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Jatropha curcas])

HSP 1 Score: 291.6 bits (745), Expect = 1.2e-75
Identity = 151/221 (68.33%), Postives = 177/221 (80.09%), Query Frame = 1 

Query: 12  SPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSITLTSPFPSLAIP 71
           +P +K S    FL+  L   +P           KPI +++LLS AL++TL SP PSLAIP
Sbjct: 18  NPIQKVSPRFHFLNFSLEIPTP-----------KPILLTNLLSLALTVTLNSPLPSLAIP 77

Query: 72  SFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSSFAFPLSIPESF 131
           S NSLSSP+ PTTPFSQSK+L +G E+GKIRPCPS NPSCVSTNPKSSSFAFPL+IP+  
Sbjct: 78  SPNSLSSPVIPTTPFSQSKNLILGPEDGKIRPCPSTNPSCVSTNPKSSSFAFPLTIPDDS 137

Query: 132 TGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFLVRGDVAAYRIM 191
           T N IQKLQE IL+TQRNAKIQ++ED P G Y++AEVDG FGRDV+EFLV+GDV AYR M
Sbjct: 138 TDNAIQKLQEAILKTQRNAKIQVIEDAPNGTYLQAEVDGGFGRDVLEFLVKGDVVAYRCM 197

Query: 192 AAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM 233
           A KVTYVYPFTTALGDSKGQEERMKKIIE+L WY+P+F+SM
Sbjct: 198 ATKVTYVYPFTTALGDSKGQEERMKKIIEQLGWYAPSFDSM 227

[Close]
BLAST of Cp4.1LG09g09640 vs. NCBI nr
Match: gi|225456361|ref|XP_002280221.1| (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Vitis vinifera])

HSP 1 Score: 287.0 bits (733), Expect = 3.0e-74
Identity = 142/192 (73.96%), Postives = 165/192 (85.94%), Query Frame = 1 

Query: 41  NSNHKPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGK 100
           NSN +P  + +LLSFAL+++L S   SLA+PS NS SS L PTTPFSQSK+L +GLENGK
Sbjct: 34  NSNTRPFLLPNLLSFALTVSLASSPLSLALPSINSQSSLLPPTTPFSQSKNLQVGLENGK 93

Query: 101 IRPCPSINPSCVSTNPKSSSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPY 160
           IRPCPSINP CVSTNPKSSSFAFPL+IPE ++ N +QKLQE IL+TQRNAKIQ+VEDTP 
Sbjct: 94  IRPCPSINPGCVSTNPKSSSFAFPLTIPEKYSDNAVQKLQETILKTQRNAKIQVVEDTPD 153

Query: 161 GQYMEAEVDGNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIE 220
           GQY+ AEVDG FGRD++EFLV+GDV AYR MA KVTYVYPFTTALGDSKGQEERMKKII+
Sbjct: 154 GQYLRAEVDGGFGRDIMEFLVKGDVVAYRTMATKVTYVYPFTTALGDSKGQEERMKKIID 213

Query: 221 ELDWYSPTFESM 233
            L WY+P+ +SM
Sbjct: 214 LLGWYAPSLDSM 225

[Close]
BLAST of Cp4.1LG09g09640 vs. NCBI nr
Match: gi|566206990|ref|XP_002322266.2| (hypothetical protein POPTR_0015s10960g [Populus trichocarpa])

HSP 1 Score: 284.3 bits (726), Expect = 2.0e-73
Identity = 145/226 (64.16%), Postives = 172/226 (76.11%), Query Frame = 1 

Query: 14  WKKKSNNNQFLSAVLNRTSPPSMAALPNSNH-------KPIFISHLLSFALSITLTSPFP 73
           WKK+   N    +++    PP ++    +N        KPI  ++L S AL++TL SP P
Sbjct: 4   WKKERITNVTSMSLIGHVLPPHLSTSKITNFTSQNVTPKPILFTNLFSLALTVTLNSPLP 63

Query: 74  SLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSSFAFPLS 133
           SLAIPS NS    LSPTTPFSQSK+L IGLENGKIRPCPS NP CVSTNP+SSSF+FP  
Sbjct: 64  SLAIPSLNSQPPLLSPTTPFSQSKNLQIGLENGKIRPCPSTNPGCVSTNPQSSSFSFPWR 123

Query: 134 IPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFLVRGDVA 193
           IPE+ T N IQKL+E IL+TQRNAKIQ++EDTP G+Y++AEVDG F  DV+EFLVRGDV 
Sbjct: 124 IPENDTENAIQKLEEAILKTQRNAKIQVIEDTPNGKYLQAEVDGGFDPDVLEFLVRGDVV 183

Query: 194 AYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM 233
           AYR MA KVTYVYPFTTA GDSKGQEERMKKI+ EL WY+P+F+SM
Sbjct: 184 AYRTMATKVTYVYPFTTAFGDSKGQEERMKKILNELGWYAPSFDSM 229

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g09640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TL1Y_ARATH3.2e-6363.59Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At4... [more]
BLAST of Cp4.1LG09g09640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRK9_CUCSA1.5e-10483.05Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050570 PE=4 SV=1[more]
A0A067JIF3_JATCU8.6e-7668.33Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26439 PE=4 SV=1[more]
D7SH07_VITVI2.1e-7473.96Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g01170 PE=4 SV=... [more]
B9IFC9_POPTR1.4e-7364.16Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s10960g PE=4 SV=2[more]
A0A067E7V8_CITSI2.6e-7274.60Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026604mg PE=4 SV=1[more]
BLAST of Cp4.1LG09g09640 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G24930.11.8e-6463.59 thylakoid lumenal 17.9 kDa protein, chloroplast[more]
BLAST of Cp4.1LG09g09640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659067523|ref|XP_008439847.1|7.4e-10583.54PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo][more]
gi|449474267|ref|XP_004154123.1|2.2e-10483.05PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus][more]
gi|802771103|ref|XP_012090684.1|1.2e-7568.33PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Jatropha curcas][more]
gi|225456361|ref|XP_002280221.1|3.0e-7473.96PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Vitis vinifera][more]
gi|566206990|ref|XP_002322266.2|2.0e-7364.16hypothetical protein POPTR_0015s10960g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0008150 biological_process
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g09640.1Cp4.1LG09g09640.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36783FAMILY NOT NAMEDcoord: 28..234
score: 8.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g09640Cucsa.392140Cucumber (Gy14) v1cgycpeB1034
Cp4.1LG09g09640CmaCh18G003130Cucurbita maxima (Rimu)cmacpeB414
Cp4.1LG09g09640CmoCh18G002230Cucurbita moschata (Rifu)cmocpeB377
Cp4.1LG09g09640Cla002626Watermelon (97103) v1cpewmB025
Cp4.1LG09g09640Csa1G050570Cucumber (Chinese Long) v2cpecuB029
Cp4.1LG09g09640MELO3C002367Melon (DHL92) v3.5.1cpemeB026
Cp4.1LG09g09640ClCG03G003830Watermelon (Charleston Gray)cpewcgB036
Cp4.1LG09g09640CSPI01G09620Wild cucumber (PI 183967)cpecpiB025
Cp4.1LG09g09640Lsi02G005110Bottle gourd (USVL1VR-Ls)cpelsiB026
Cp4.1LG09g09640MELO3C002367.2Melon (DHL92) v3.6.1cpemedB031
Cp4.1LG09g09640CsaV3_1G009730Cucumber (Chinese Long) v3cpecucB0031
Cp4.1LG09g09640Bhi08G001234Wax gourdcpewgoB0048
Cp4.1LG09g09640CsGy1G009670Cucumber (Gy14) v2cgybcpeB018
Cp4.1LG09g09640Carg06801Silver-seed gourdcarcpeB0694
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g09640Cucurbita pepo (Zucchini)cpecpeB029
Cp4.1LG09g09640Cucurbita pepo (Zucchini)cpecpeB045
Cp4.1LG09g09640Cucumber (Gy14) v1cgycpeB0419
Cp4.1LG09g09640Cucurbita maxima (Rimu)cmacpeB214
Cp4.1LG09g09640Cucurbita moschata (Rifu)cmocpeB045
Cp4.1LG09g09640Cucurbita moschata (Rifu)cmocpeB184
Cp4.1LG09g09640Watermelon (Charleston Gray)cpewcgB051
Cp4.1LG09g09640Watermelon (97103) v1cpewmB061
Cp4.1LG09g09640Cucumber (Gy14) v2cgybcpeB015
Cp4.1LG09g09640Melon (DHL92) v3.6.1cpemedB041
Cp4.1LG09g09640Silver-seed gourdcarcpeB0507
Cp4.1LG09g09640Silver-seed gourdcarcpeB1396
Cp4.1LG09g09640Cucumber (Chinese Long) v3cpecucB0029