CSPI01G09620 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G09620
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Thylakoid lumenal 17.9 kDa protein
Location	Chr1 : 6007243 .. 6009433 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGAACCAAAAAATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGGACAACAACAACAAGAACCAGTACCACTCCCCAGTCTCTGTTCCATCCATGTCCACTCTTCAAAATGCAAATCACAAGCCCATTTTTCTCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACTCTAAGCTCACCATTTCCTTCTATCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTCTCTCAATCCAAGAACCTACCAACTGGACTGGAAAATGGGTACGCTTTGAATTTTGTAATTTCGACTGCTACTCTTCAGTTTTGTTACTTGTTTATTTGTAGTTTCTATCTGCCCTAAATTTGCATTGGTTTTTCTCAAGTATTTCATTGACAATGTGGCTAACTGCATCTTCGGTTTTCCCTCAATTTTGTCCTCTTTGATGTTGCAGGAAAATTATGCCTTGCCCATCAACCAATCCTTCTTGTGTTTCCACAAATCCCAAATCATCTTCTTTTGCTTTCCCTTTAAACATTCCTGATAATTTCAGTGGGAATCCAATTCAGGTTTTAGTTCTCTGAAAGCTGAGCATGATTTAATGTTCTTCATCAAAATTAGGTTCTCTTGGTCGTGTTGCTTTTCATGTTTCTGCTCTACATTTATTTGCAGAAACTGCAAGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAAGATACGCCATATGGTAATTGAACTGAACCTACGCTAGCAGATTTAATCTTTGCATTTCAGATTGATATACATATGTTGATTAGAATGCTGAGATAGAGATGAGAATGGGTTCTATTTACTATAGTGACCGTTGGCTTATTCTCTTGAATTCAGTAGTGCTTTAACATAGATAAGGAAGTAAATCCTTGGCTGCGTTATAACTTCTAAGTTTGATTTTTGAACTCTCAAATACAGGTGTGAGTTCCTTAAAATTCCGTTGTTATAACTAACAAATCCACGGACCTTCTACACTTTAACTTTAACAATGATCATAAGTTAGAGCATCTATCCAGCACAAAATTGAAGGATAAACAGTTTGTTTTTATTTTTTTTAACAAAGTGTCTGCATTAGACATGTGTCGTACATGGATATGTCTGGACACGCTTTAGACACATGTCCGACATGCTAAAAGAAGTGTCAGGAATTTTTTCTTCTAATTTTGGACAAGACTTTGACATGGTTATGGCTTTAGAAAATATTAACTCACAAAATAGGGAGAAAATTTGAGATTCTCTTTTAGTTTGAATCCTTATATATTGATCAATCCTAAAGTAATAGAATGATATCCTCCTCCTCTAGTTATAGCCAACTAAATCTCTTTATATCTTAAGGTTTCATACATCGTTAATCAACTTTACTTGTGTTTGTTTCTAGTGAAGTATATTTTGCATGGATTTTAATTTACATGTATTTATCTATAATGAAGTTAATATATCTAACATACACACATTTTATATTTAAAAGAATTTTATCCCAAATGGATCCATGTCCAATTATTTCAGAAATTGACGTGTTGCCATATCCATGTTGTGTCATGTGTGCGTTTGTGCTTCTTAGTTCGTAAACTTATTCGATCCAAAATCAAAAGTTCAAGTTAGACACTTATTAATTTCACATGCCAATTAAGTATACTTGAAAAGTTTATGACAGTCTACATTTTTGGATCTCACATAAAAATTTCCAGCCTTACACTTCAAAGAGGAGTAAGCTTATGGCTTATAAAACAAGACGCATTCATGATTATGACAGGTCAATATTTAGAAGCTGAAGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGATTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGCATTGGTATTCTCCAACCTTCGATTCCATGGATGACTAATACAAACCCTCTGCTTCTTTCTTTATTCTTTATTTTTCTTCCCTTTTCATTTTTACTCAATCTGATTAAACTCATTTTCAGCCACATTTATTTTAGCCACATATAAAAGAATGTTCAACTTCATTATCATCTATAATTATTCATCTTGTTGTT

mRNA sequence

ATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGGACAACAACAACAAGAACCAGTACCACTCCCCAGTCTCTGTTCCATCCATGTCCACTCTTCAAAATGCAAATCACAAGCCCATTTTTCTCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACTCTAAGCTCACCATTTCCTTCTATCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTCTCTCAATCCAAGAACCTACCAACTGGACTGGAAAATGGGAAAATTATGCCTTGCCCATCAACCAATCCTTCTTGTGTTTCCACAAATCCCAAATCATCTTCTTTTGCTTTCCCTTTAAACATTCCTGATAATTTCAGTGGGAATCCAATTCAGAAACTGCAAGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAAGATACGCCATATGGTCAATATTTAGAAGCTGAAGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGATTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGCATTGGTATTCTCCAACCTTCGATTCCATGGATGACTAA

Coding sequence (CDS)

ATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGGACAACAACAACAAGAACCAGTACCACTCCCCAGTCTCTGTTCCATCCATGTCCACTCTTCAAAATGCAAATCACAAGCCCATTTTTCTCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACTCTAAGCTCACCATTTCCTTCTATCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTCTCTCAATCCAAGAACCTACCAACTGGACTGGAAAATGGGAAAATTATGCCTTGCCCATCAACCAATCCTTCTTGTGTTTCCACAAATCCCAAATCATCTTCTTTTGCTTTCCCTTTAAACATTCCTGATAATTTCAGTGGGAATCCAATTCAGAAACTGCAAGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAAGATACGCCATATGGTCAATATTTAGAAGCTGAAGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGATTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGCATTGGTATTCTCCAACCTTCGATTCCATGGATGACTAA

Homology

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BLAST of CSPI01G09620 vs. Swiss-Prot
Match: TL1Y_ARATH (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At4g24930 PE=1 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 7.5e-65
Identity = 127/186 (68.28%), Postives = 157/186 (84.41%), Query Frame = 1


Query: 46  LSHLLSFALSITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTN 105
           L  L+SFAL+I+L+S  P++AIPSL+S S PL  TTPF+QSK + TGL NGKI PCPSTN
Sbjct: 43  LPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNGKIRPCPSTN 102

Query: 106 PSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEV 165
           P CVSTNP SSSF+FPL IP+  + +PI+KL+EAI+ TQ+NPK  V+EDTPYG+Y+EAEV
Sbjct: 103 PGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEV 162

Query: 166 D-GNFGRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSP 225
           + G F RDV+EFLV+ DV AYR MATKVT+VYPFTTA GDSKGQEER++K+IDQL WY+P
Sbjct: 163 EGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAP 222

Query: 226 TFDSMD 231
           TF+SM+
Sbjct: 223 TFESME 225

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BLAST of CSPI01G09620 vs. TrEMBL
Match: A0A0A0LRK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050570 PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 9.0e-126
Identity = 230/232 (99.14%), Postives = 230/232 (99.14%), Query Frame = 1


Query: 1   MSSLQFRPPLVSPW-KKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60
           MSSLQFRPPLVSPW KKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS
Sbjct: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60

Query: 61  SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSFA 120
           SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPS NPSCVSTNPKSSSFA
Sbjct: 61  SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120

Query: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180
           FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR
Sbjct: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180

Query: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232
           GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232

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BLAST of CSPI01G09620 vs. TrEMBL
Match: A0A067JIF3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26439 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 4.1e-78
Identity = 150/196 (76.53%), Postives = 171/196 (87.24%), Query Frame = 1


Query: 35  TLQNANHKPIFLSHLLSFALSITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLE 94
           +L+    KPI L++LLS AL++TL+SP PS+AIPS NSLSSP+ PTTPFSQSKNL  G E
Sbjct: 33  SLEIPTPKPILLTNLLSLALTVTLNSPLPSLAIPSPNSLSSPVIPTTPFSQSKNLILGPE 92

Query: 95  NGKIMPCPSTNPSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVED 154
           +GKI PCPSTNPSCVSTNPKSSSFAFPL IPD+ + N IQKLQEAIL+TQRN KIQV+ED
Sbjct: 93  DGKIRPCPSTNPSCVSTNPKSSSFAFPLTIPDDSTDNAIQKLQEAILKTQRNAKIQVIED 152

Query: 155 TPYGQYLEAEVDGNFGRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRK 214
            P G YL+AEVDG FGRDV+EFLV+GDV AYR MATKVTYVYPFTTALGDSKGQEERM+K
Sbjct: 153 APNGTYLQAEVDGGFGRDVLEFLVKGDVVAYRCMATKVTYVYPFTTALGDSKGQEERMKK 212

Query: 215 IIDQLHWYSPTFDSMD 231
           II+QL WY+P+FDSMD
Sbjct: 213 IIEQLGWYAPSFDSMD 228

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BLAST of CSPI01G09620 vs. TrEMBL
Match: D7SH07_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g01170 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 4.2e-75
Identity = 149/218 (68.35%), Postives = 175/218 (80.28%), Query Frame = 1


Query: 13  PWKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLSSPFPSIAIPSLNS 72
           P    +  K  +H  + +P+  T +N+N +P  L +LLSFAL+++L+S   S+A+PS+NS
Sbjct: 12  PLSTHSTIKASFH--LRIPT-ETSRNSNTRPFLLPNLLSFALTVSLASSPLSLALPSINS 71

Query: 73  LSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSFAFPLNIPDNFSGNP 132
            SS L PTTPFSQSKNL  GLENGKI PCPS NP CVSTNPKSSSFAFPL IP+ +S N 
Sbjct: 72  QSSLLPPTTPFSQSKNLQVGLENGKIRPCPSINPGCVSTNPKSSSFAFPLTIPEKYSDNA 131

Query: 133 IQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVRGDVAAYRIMATKV 192
           +QKLQE IL+TQRN KIQVVEDTP GQYL AEVDG FGRD++EFLV+GDV AYR MATKV
Sbjct: 132 VQKLQETILKTQRNAKIQVVEDTPDGQYLRAEVDGGFGRDIMEFLVKGDVVAYRTMATKV 191

Query: 193 TYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMD 231
           TYVYPFTTALGDSKGQEERM+KIID L WY+P+ DSMD
Sbjct: 192 TYVYPFTTALGDSKGQEERMKKIIDLLGWYAPSLDSMD 226

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BLAST of CSPI01G09620 vs. TrEMBL
Match: B9IFC9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s10960g PE=4 SV=2)

HSP 1 Score: 288.5 bits (737), Expect = 7.2e-75
Identity = 145/206 (70.39%), Postives = 168/206 (81.55%), Query Frame = 1


Query: 25  HSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLSSPFPSIAIPSLNSLSSPLSPTTPFS 84
           H   S  +  T QN   KPI  ++L S AL++TL+SP PS+AIPSLNS    LSPTTPFS
Sbjct: 25  HLSTSKITNFTSQNVTPKPILFTNLFSLALTVTLNSPLPSLAIPSLNSQPPLLSPTTPFS 84

Query: 85  QSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQ 144
           QSKNL  GLENGKI PCPSTNP CVSTNP+SSSF+FP  IP+N + N IQKL+EAIL+TQ
Sbjct: 85  QSKNLQIGLENGKIRPCPSTNPGCVSTNPQSSSFSFPWRIPENDTENAIQKLEEAILKTQ 144

Query: 145 RNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGD 204
           RN KIQV+EDTP G+YL+AEVDG F  DV+EFLVRGDV AYR MATKVTYVYPFTTA GD
Sbjct: 145 RNAKIQVIEDTPNGKYLQAEVDGGFDPDVLEFLVRGDVVAYRTMATKVTYVYPFTTAFGD 204

Query: 205 SKGQEERMRKIIDQLHWYSPTFDSMD 231
           SKGQEERM+KI+++L WY+P+FDSMD
Sbjct: 205 SKGQEERMKKILNELGWYAPSFDSMD 230

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BLAST of CSPI01G09620 vs. TrEMBL
Match: A0A067E7V8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026604mg PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.1e-74
Identity = 146/201 (72.64%), Postives = 168/201 (83.58%), Query Frame = 1


Query: 31  PSMSTLQNANHKPIFLSHLLSFALSITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLP 90
           P+ ST Q    KPI LSHLLS AL+ T +SP P +A+PS+NS    LSPTTPFSQSKNL 
Sbjct: 36  PAASTSQALYKKPIILSHLLSLALTATFNSPLPCLAVPSVNSQFPLLSPTTPFSQSKNLQ 95

Query: 91  TGL-ENGKIMPCPSTNPSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKI 150
            GL E+GKI PCPSTNP CVSTNPKSSSFAFPL IP+N + N IQKLQEAIL+TQ+N KI
Sbjct: 96  LGLQEDGKIRPCPSTNPGCVSTNPKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKI 155

Query: 151 QVVEDTPYGQYLEAEVDGNFGRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQE 210
            VVEDTP+GQYL+AEVDG FGRDV+EFLV+GDV AYR +A KVTYVYPFTTALGDSKGQE
Sbjct: 156 GVVEDTPFGQYLQAEVDGGFGRDVLEFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQE 215

Query: 211 ERMRKIIDQLHWYSPTFDSMD 231
           ERM++II +L WY+P+FDSM+
Sbjct: 216 ERMKQIIAELGWYAPSFDSME 236

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BLAST of CSPI01G09620 vs. TAIR10
Match: AT4G24930.1 (AT4G24930.1 thylakoid lumenal 17.9 kDa protein, chloroplast)

HSP 1 Score: 248.4 bits (633), Expect = 4.2e-66
Identity = 127/186 (68.28%), Postives = 157/186 (84.41%), Query Frame = 1


Query: 46  LSHLLSFALSITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTN 105
           L  L+SFAL+I+L+S  P++AIPSL+S S PL  TTPF+QSK + TGL NGKI PCPSTN
Sbjct: 43  LPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNGKIRPCPSTN 102

Query: 106 PSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEV 165
           P CVSTNP SSSF+FPL IP+  + +PI+KL+EAI+ TQ+NPK  V+EDTPYG+Y+EAEV
Sbjct: 103 PGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEV 162

Query: 166 D-GNFGRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSP 225
           + G F RDV+EFLV+ DV AYR MATKVT+VYPFTTA GDSKGQEER++K+IDQL WY+P
Sbjct: 163 EGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAP 222

Query: 226 TFDSMD 231
           TF+SM+
Sbjct: 223 TFESME 225

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BLAST of CSPI01G09620 vs. NCBI nr
Match: gi|449474267|ref|XP_004154123.1| (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 457.6 bits (1176), Expect = 1.3e-125
Identity = 230/232 (99.14%), Postives = 230/232 (99.14%), Query Frame = 1


Query: 1   MSSLQFRPPLVSPW-KKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60
           MSSLQFRPPLVSPW KKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS
Sbjct: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60

Query: 61  SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSFA 120
           SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPS NPSCVSTNPKSSSFA
Sbjct: 61  SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120

Query: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180
           FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR
Sbjct: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180

Query: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232
           GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232

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BLAST of CSPI01G09620 vs. NCBI nr
Match: gi|659067523|ref|XP_008439847.1| (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo])

HSP 1 Score: 446.0 bits (1146), Expect = 3.9e-122
Identity = 223/233 (95.71%), Postives = 228/233 (97.85%), Query Frame = 1


Query: 1   MSSLQFRPPLVSPWKK--DNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITL 60
           MSSLQFRP LVSPWKK  +NNNKNQYHSPVSVPSMS LQN NHKPIFLSHLLSFALSITL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60

Query: 61  SSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
           +SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120

Query: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
           AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 RGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232
           +GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

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BLAST of CSPI01G09620 vs. NCBI nr
Match: gi|802771103|ref|XP_012090684.1| (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Jatropha curcas])

HSP 1 Score: 299.3 bits (765), Expect = 5.9e-78
Identity = 150/196 (76.53%), Postives = 171/196 (87.24%), Query Frame = 1


Query: 35  TLQNANHKPIFLSHLLSFALSITLSSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLE 94
           +L+    KPI L++LLS AL++TL+SP PS+AIPS NSLSSP+ PTTPFSQSKNL  G E
Sbjct: 33  SLEIPTPKPILLTNLLSLALTVTLNSPLPSLAIPSPNSLSSPVIPTTPFSQSKNLILGPE 92

Query: 95  NGKIMPCPSTNPSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVED 154
           +GKI PCPSTNPSCVSTNPKSSSFAFPL IPD+ + N IQKLQEAIL+TQRN KIQV+ED
Sbjct: 93  DGKIRPCPSTNPSCVSTNPKSSSFAFPLTIPDDSTDNAIQKLQEAILKTQRNAKIQVIED 152

Query: 155 TPYGQYLEAEVDGNFGRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRK 214
            P G YL+AEVDG FGRDV+EFLV+GDV AYR MATKVTYVYPFTTALGDSKGQEERM+K
Sbjct: 153 APNGTYLQAEVDGGFGRDVLEFLVKGDVVAYRCMATKVTYVYPFTTALGDSKGQEERMKK 212

Query: 215 IIDQLHWYSPTFDSMD 231
           II+QL WY+P+FDSMD
Sbjct: 213 IIEQLGWYAPSFDSMD 228

[Close]

BLAST of CSPI01G09620 vs. NCBI nr
Match: gi|225456361|ref|XP_002280221.1| (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Vitis vinifera])

HSP 1 Score: 289.3 bits (739), Expect = 6.1e-75
Identity = 149/218 (68.35%), Postives = 175/218 (80.28%), Query Frame = 1


Query: 13  PWKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLSSPFPSIAIPSLNS 72
           P    +  K  +H  + +P+  T +N+N +P  L +LLSFAL+++L+S   S+A+PS+NS
Sbjct: 12  PLSTHSTIKASFH--LRIPT-ETSRNSNTRPFLLPNLLSFALTVSLASSPLSLALPSINS 71

Query: 73  LSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSFAFPLNIPDNFSGNP 132
            SS L PTTPFSQSKNL  GLENGKI PCPS NP CVSTNPKSSSFAFPL IP+ +S N 
Sbjct: 72  QSSLLPPTTPFSQSKNLQVGLENGKIRPCPSINPGCVSTNPKSSSFAFPLTIPEKYSDNA 131

Query: 133 IQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVRGDVAAYRIMATKV 192
           +QKLQE IL+TQRN KIQVVEDTP GQYL AEVDG FGRD++EFLV+GDV AYR MATKV
Sbjct: 132 VQKLQETILKTQRNAKIQVVEDTPDGQYLRAEVDGGFGRDIMEFLVKGDVVAYRTMATKV 191

Query: 193 TYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMD 231
           TYVYPFTTALGDSKGQEERM+KIID L WY+P+ DSMD
Sbjct: 192 TYVYPFTTALGDSKGQEERMKKIIDLLGWYAPSLDSMD 226

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BLAST of CSPI01G09620 vs. NCBI nr
Match: gi|1009130226|ref|XP_015882182.1| (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 289.3 bits (739), Expect = 6.1e-75
Identity = 152/201 (75.62%), Postives = 171/201 (85.07%), Query Frame = 1


Query: 35  TLQNAN---HKPIFLSHLLSFALSITL-SSPFPSIAIPSLNSLSSPLSPTTPFSQSKNLP 94
           +LQN N    KPI L  LLS ALS TL SSP PS+AIPS++S SS LSPTTPFSQSKNL 
Sbjct: 32  SLQNPNPEVKKPILLPSLLSLALSATLISSPLPSLAIPSISSQSSLLSPTTPFSQSKNLE 91

Query: 95  TGLENGKIMPCPSTNPSCVSTNPKSSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQ 154
           TGL+NGKI PCPSTNP C+STNP+SSSFAFPL IP+  S N IQKLQEAIL+TQ+N KIQ
Sbjct: 92  TGLDNGKIRPCPSTNPGCISTNPRSSSFAFPLKIPERSSENAIQKLQEAILKTQKNAKIQ 151

Query: 155 VVEDTPYGQYLEAEVDGNF-GRDVIEFLVRGDVAAYRIMATKVTYVYPFTTALGDSKGQE 214
           VVEDTP GQYL+AEVDG F  RDV+EFLV+ D+AAYR MATKVTY+YPFTTALGDSKGQE
Sbjct: 152 VVEDTPDGQYLQAEVDGGFNARDVVEFLVKEDLAAYRCMATKVTYIYPFTTALGDSKGQE 211

Query: 215 ERMRKIIDQLHWYSPTFDSMD 231
           ERM+KIID+L WY+P+FDSMD
Sbjct: 212 ERMKKIIDELGWYAPSFDSMD 232

The following BLAST results are available for this feature:

BLAST of CSPI01G09620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TL1Y_ARATH	7.5e-65	68.28	Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At4...	[more]

BLAST of CSPI01G09620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRK9_CUCSA	9.0e-126	99.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050570 PE=4 SV=1	[more]
A0A067JIF3_JATCU	4.1e-78	76.53	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26439 PE=4 SV=1	[more]
D7SH07_VITVI	4.2e-75	68.35	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g01170 PE=4 SV=...	[more]
B9IFC9_POPTR	7.2e-75	70.39	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s10960g PE=4 SV=2	[more]
A0A067E7V8_CITSI	2.1e-74	72.64	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026604mg PE=4 SV=1	[more]

BLAST of CSPI01G09620 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G24930.1	4.2e-66	68.28	thylakoid lumenal 17.9 kDa protein, chloroplast	[more]

BLAST of CSPI01G09620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449474267\|ref\|XP_004154123.1\|	1.3e-125	99.14	PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus]	[more]
gi\|659067523\|ref\|XP_008439847.1\|	3.9e-122	95.71	PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo]	[more]
gi\|802771103\|ref\|XP_012090684.1\|	5.9e-78	76.53	PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Jatropha curcas]	[more]
gi\|225456361\|ref\|XP_002280221.1\|	6.1e-75	68.35	PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Vitis vinifera]	[more]
gi\|1009130226\|ref\|XP_015882182.1\|	6.1e-75	75.62	PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0031977	thylakoid lumen
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G09620.1	CSPI01G09620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36783	FAMILY NOT NAMED	coord: 17..231 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G09620	Cla002626	Watermelon (97103) v1	cpiwmB010
CSPI01G09620	Csa1G050570	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G09620	MELO3C002367	Melon (DHL92) v3.5.1	cpimeB024
CSPI01G09620	ClCG03G003830	Watermelon (Charleston Gray)	cpiwcgB038
CSPI01G09620	Lsi02G005110	Bottle gourd (USVL1VR-Ls)	cpilsiB021
CSPI01G09620	MELO3C002367.2	Melon (DHL92) v3.6.1	cpimedB023
CSPI01G09620	CsaV3_1G009730	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G09620	Cla97C03G054960	Watermelon (97103) v2	cpiwmbB032
CSPI01G09620	Bhi08G001234	Wax gourd	cpiwgoB032
CSPI01G09620	Cucsa.392140	Cucumber (Gy14) v1	cgycpiB576
CSPI01G09620	CmaCh18G003130	Cucurbita maxima (Rimu)	cmacpiB401
CSPI01G09620	CmoCh18G002230	Cucurbita moschata (Rifu)	cmocpiB383
CSPI01G09620	Cp4.1LG09g09640	Cucurbita pepo (Zucchini)	cpecpiB025
CSPI01G09620	CsGy1G009670	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G09620	Carg06801	Silver-seed gourd	carcpiB0531

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G09620	Silver-seed gourd	carcpiB0398
CSPI01G09620	Silver-seed gourd	carcpiB1041
CSPI01G09620	Cucumber (Chinese Long) v3	cpicucB014
CSPI01G09620	Watermelon (97103) v2	cpiwmbB072
CSPI01G09620	Wild cucumber (PI 183967)	cpicpiB003
CSPI01G09620	Cucumber (Gy14) v1	cgycpiB230
CSPI01G09620	Cucurbita maxima (Rimu)	cmacpiB063
CSPI01G09620	Cucurbita maxima (Rimu)	cmacpiB103
CSPI01G09620	Cucurbita maxima (Rimu)	cmacpiB206
CSPI01G09620	Cucurbita moschata (Rifu)	cmocpiB056
CSPI01G09620	Cucurbita moschata (Rifu)	cmocpiB098
CSPI01G09620	Cucurbita moschata (Rifu)	cmocpiB193
CSPI01G09620	Cucumber (Chinese Long) v2	cpicuB010
CSPI01G09620	Melon (DHL92) v3.5.1	cpimeB052
CSPI01G09620	Watermelon (Charleston Gray)	cpiwcgB075
CSPI01G09620	Watermelon (97103) v1	cpiwmB094
CSPI01G09620	Cucurbita pepo (Zucchini)	cpecpiB359
CSPI01G09620	Cucurbita pepo (Zucchini)	cpecpiB517
CSPI01G09620	Cucurbita pepo (Zucchini)	cpecpiB652
CSPI01G09620	Bottle gourd (USVL1VR-Ls)	cpilsiB068
CSPI01G09620	Melon (DHL92) v3.6.1	cpimedB046
CSPI01G09620	Cucumber (Gy14) v2	cgybcpiB012