CsGy1G006160 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G006160
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 3994888 .. 3995367 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGGTTGGTGTGCTTTGATTGTGGCCGTGGGGGCTTGGTTTAGACAGCCGTATTGTGGAGCGAGGAGAAGCTTGGAAATAGTGGCGGAGACGGTGGAGGAGAGGAAAGAATTTATTATAGGATTATGTGTATCATCGGCAATAGGGATAGTAACAACGTCTGTTCAAATCAAAACCAAGCTTCCAAATTCATTTCAGTGTCTGTCCATGCCTATTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCGAATCAGTTTTCAGAACACTTTCAGAGATTCTGTATTGTGTTGGAGATTTCATGTGCGCTACAACCTGTTTCATTGCCACGGCCATTTCCTATGACGACGCACATTTTCATACCATCGTCATTGTCCTTTACTCAATCTTCTGTATCATCTGCATTATCTTCATCATCTTCATCTCCATCACCCACAACGACCCTTCATCACCTTCCTCCTCCAATATCTAG

mRNA sequence

ATGTTGGGTTGGTGTGCTTTGATTGTGGCCGTGGGGGCTTGGTTTAGACAGCCGTATTGTGGAGCGAGGAGAAGCTTGGAAATAGTGGCGGAGACGGTGGAGGAGAGGAAAGAATTTATTATAGGATTATGTGTATCATCGGCAATAGGGATAGTAACAACGTCTGTTCAAATCAAAACCAAGCTTCCAAATTCATTTCAGTGTCTGTCCATGCCTATTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCGAATCAGTTTTCAGAACACTTTCAGAGATTCTGTATTGTGTTGGAGATTTCATGTGCGCTACAACCTGTTTCATTGCCACGGCCATTTCCTATGACGACGCACATTTTCATACCATCGTCATTGTCCTTTACTCAATCTTCTGTATCATCTGCATTATCTTCATCATCTTCATCTCCATCACCCACAACGACCCTTCATCACCTTCCTCCTCCAATATCTAG

Coding sequence (CDS)

ATGTTGGGTTGGTGTGCTTTGATTGTGGCCGTGGGGGCTTGGTTTAGACAGCCGTATTGTGGAGCGAGGAGAAGCTTGGAAATAGTGGCGGAGACGGTGGAGGAGAGGAAAGAATTTATTATAGGATTATGTGTATCATCGGCAATAGGGATAGTAACAACGTCTGTTCAAATCAAAACCAAGCTTCCAAATTCATTTCAGTGTCTGTCCATGCCTATTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCGAATCAGTTTTCAGAACACTTTCAGAGATTCTGTATTGTGTTGGAGATTTCATGTGCGCTACAACCTGTTTCATTGCCACGGCCATTTCCTATGACGACGCACATTTTCATACCATCGTCATTGTCCTTTACTCAATCTTCTGTATCATCTGCATTATCTTCATCATCTTCATCTCCATCACCCACAACGACCCTTCATCACCTTCCTCCTCCAATATCTAG

Protein sequence

MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVLYSIFCIICIIFIIFISITHNDPSSPSSSNI
Homology
[Close]
BLAST of CsGy1G006160 vs. NCBI nr
Match: KGN64088.1 (hypothetical protein Csa_1G040510 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 1.7e-64
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60
           MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT
Sbjct: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60

Query: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120
           KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA
Sbjct: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120

Query: 121 HFHTIVIVL 130
           HFHTIVIVL
Sbjct: 121 HFHTIVIVL 129

[Close]
BLAST of CsGy1G006160 vs. NCBI nr
Match: KGN59865.1 (hypothetical protein Csa_3G851175 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 4.5e-41
Identity = 95/129 (73.64%), Postives = 105/129 (81.40%), Query Frame = 0 

Query: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60
           MLG CAL VAV  WFRQ Y G RRSLE+VAE VEERKE IIG C+SSAIGI T SVQ KT
Sbjct: 1   MLGQCALTVAV--WFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKT 60

Query: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120
           KLPNSFQ LS+ +L+CF+SV FARMI S+F+TLS+ILYC G F+CAT CFIATAI Y D 
Sbjct: 61  KLPNSFQFLSIAVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPY-DT 120

Query: 121 HFHTIVIVL 130
           HFH IVIVL
Sbjct: 121 HFHIIVIVL 126

[Close]
BLAST of CsGy1G006160 vs. NCBI nr
Match: KGN64089.1 (hypothetical protein Csa_1G040520 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 5.0e-32
Identity = 78/112 (69.64%), Postives = 88/112 (78.57%), Query Frame = 0 

Query: 6   ALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNS 65
           ALIV    WFRQ Y G RRS E+ AE VEE K+ IIG CVSSAIGI T SV IKT+LPNS
Sbjct: 4   ALIVG-AVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNS 63

Query: 66  FQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISY 118
           FQ LS+ +LLCFVSVVFARMI S+F TLS+ILYCVG  + A++CFIATAI Y
Sbjct: 64  FQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 114

[Close]
BLAST of CsGy1G006160 vs. NCBI nr
Match: KGN64090.1 (hypothetical protein Csa_1G041520 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 6.3e-19
Identity = 60/108 (55.56%), Postives = 78/108 (72.22%), Query Frame = 0 

Query: 24  RSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT--KLPNSFQCLSMPILLCFVSVV 83
           R L +VAE VEE KE I+ LCVSSAIGI T SVQI+T  +LP +FQ LS+ +LLCF  V 
Sbjct: 35  RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVG 94

Query: 84  FARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVL 130
           FA+M + +F+T+S+ILYCVG F+  T  FIATAI +   +F  I+ +L
Sbjct: 95  FAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPF-APYFQIIIFIL 141

[Close]
BLAST of CsGy1G006160 vs. NCBI nr
Match: KGN60535.1 (hypothetical protein Csa_2G000430 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 5.4e-10
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 0 

Query: 26  LEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSVVFARM 85
           +E+VA+ VEE+K  IIG   +    I   SVQ K KLP+SF+ +S+  LLC +  V A +
Sbjct: 10  VEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLLCFVSAMI 69

Query: 86  IESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVL 130
           I+  F+T +++LY +G F C T+  IA AI     +FH ++I+L
Sbjct: 70  IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIP-SQMYFHVLLILL 112

[Close]
BLAST of CsGy1G006160 vs. TrEMBL
Match: tr|A0A0A0LQP5|A0A0A0LQP5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.1e-64
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60
           MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT
Sbjct: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60

Query: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120
           KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA
Sbjct: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120

Query: 121 HFHTIVIVL 130
           HFHTIVIVL
Sbjct: 121 HFHTIVIVL 129

[Close]
BLAST of CsGy1G006160 vs. TrEMBL
Match: tr|A0A0A0LCY2|A0A0A0LCY2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.0e-41
Identity = 95/129 (73.64%), Postives = 105/129 (81.40%), Query Frame = 0 

Query: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60
           MLG CAL VAV  WFRQ Y G RRSLE+VAE VEERKE IIG C+SSAIGI T SVQ KT
Sbjct: 1   MLGQCALTVAV--WFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKT 60

Query: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120
           KLPNSFQ LS+ +L+CF+SV FARMI S+F+TLS+ILYC G F+CAT CFIATAI Y D 
Sbjct: 61  KLPNSFQFLSIAVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPY-DT 120

Query: 121 HFHTIVIVL 130
           HFH IVIVL
Sbjct: 121 HFHIIVIVL 126

[Close]
BLAST of CsGy1G006160 vs. TrEMBL
Match: tr|A0A0A0LSX4|A0A0A0LSX4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.3e-32
Identity = 78/112 (69.64%), Postives = 88/112 (78.57%), Query Frame = 0 

Query: 6   ALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNS 65
           ALIV    WFRQ Y G RRS E+ AE VEE K+ IIG CVSSAIGI T SV IKT+LPNS
Sbjct: 4   ALIVG-AVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNS 63

Query: 66  FQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISY 118
           FQ LS+ +LLCFVSVVFARMI S+F TLS+ILYCVG  + A++CFIATAI Y
Sbjct: 64  FQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 114

[Close]
BLAST of CsGy1G006160 vs. TrEMBL
Match: tr|A0A0A0LQB6|A0A0A0LQB6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.2e-19
Identity = 60/108 (55.56%), Postives = 78/108 (72.22%), Query Frame = 0 

Query: 24  RSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT--KLPNSFQCLSMPILLCFVSVV 83
           R L +VAE VEE KE I+ LCVSSAIGI T SVQI+T  +LP +FQ LS+ +LLCF  V 
Sbjct: 35  RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVG 94

Query: 84  FARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVL 130
           FA+M + +F+T+S+ILYCVG F+  T  FIATAI +   +F  I+ +L
Sbjct: 95  FAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPF-APYFQIIIFIL 141

[Close]
BLAST of CsGy1G006160 vs. TrEMBL
Match: tr|A0A0A0LEV1|A0A0A0LEV1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.5e-10
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 0 

Query: 26  LEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSVVFARM 85
           +E+VA+ VEE+K  IIG   +    I   SVQ K KLP+SF+ +S+  LLC +  V A +
Sbjct: 10  VEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLLCFVSAMI 69

Query: 86  IESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVL 130
           I+  F+T +++LY +G F C T+  IA AI     +FH ++I+L
Sbjct: 70  IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIP-SQMYFHVLLILL 112

The following BLAST results are available for this feature:
BLAST of CsGy1G006160 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64088.11.7e-64100.00hypothetical protein Csa_1G040510 [Cucumis sativus][more]
KGN59865.14.5e-4173.64hypothetical protein Csa_3G851175 [Cucumis sativus][more]
KGN64089.15.0e-3269.64hypothetical protein Csa_1G040520 [Cucumis sativus][more]
KGN64090.16.3e-1955.56hypothetical protein Csa_1G041520 [Cucumis sativus][more]
KGN60535.15.4e-1041.35hypothetical protein Csa_2G000430 [Cucumis sativus][more]
BLAST of CsGy1G006160 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G006160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G006160 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LQP5|A0A0A0LQP5_CUCSA1.1e-64100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1[more]
tr|A0A0A0LCY2|A0A0A0LCY2_CUCSA3.0e-4173.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1[more]
tr|A0A0A0LSX4|A0A0A0LSX4_CUCSA3.3e-3269.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1[more]
tr|A0A0A0LQB6|A0A0A0LQB6_CUCSA4.2e-1955.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1[more]
tr|A0A0A0LEV1|A0A0A0LEV1_CUCSA3.5e-1041.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G006160.1CsGy1G006160.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G006160Cla018532Watermelon (97103) v1cgybwmB064
CsGy1G006160Csa1G040510Cucumber (Chinese Long) v2cgybcuB001
CsGy1G006160ClCG04G011470Watermelon (Charleston Gray)cgybwcgB053
CsGy1G006160CSPI01G06480Wild cucumber (PI 183967)cgybcpiB001
CsGy1G006160CmaCh18G000130Cucurbita maxima (Rimu)cgybcmaB101
CsGy1G006160Lsi02G001480Bottle gourd (USVL1VR-Ls)cgyblsiB018
CsGy1G006160Cp4.1LG09g11390Cucurbita pepo (Zucchini)cgybcpeB013
CsGy1G006160CsaV3_1G006320Cucumber (Chinese Long) v3cgybcucB002
CsGy1G006160Cla97C04G078310Watermelon (97103) v2cgybwmbB053
CsGy1G006160Bhi08G000879Wax gourdcgybwgoB047
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G006160Cucumber (Chinese Long) v3cgybcucB003
CsGy1G006160Cucumber (Chinese Long) v3cgybcucB013
CsGy1G006160Cucumber (Chinese Long) v3cgybcucB037
CsGy1G006160Watermelon (97103) v2cgybwmbB057
CsGy1G006160Watermelon (97103) v2cgybwmbB078
CsGy1G006160Wax gourdcgybwgoB069
CsGy1G006160Wax gourdcgybwgoB104
CsGy1G006160Cucumber (Gy14) v2cgybcgybB002
CsGy1G006160Cucumber (Gy14) v2cgybcgybB007
CsGy1G006160Cucumber (Gy14) v2cgybcgybB027
CsGy1G006160Cucurbita maxima (Rimu)cgybcmaB023
CsGy1G006160Cucurbita maxima (Rimu)cgybcmaB030
CsGy1G006160Cucurbita maxima (Rimu)cgybcmaB073
CsGy1G006160Cucurbita maxima (Rimu)cgybcmaB085
CsGy1G006160Cucurbita moschata (Rifu)cgybcmoB024
CsGy1G006160Cucurbita moschata (Rifu)cgybcmoB029
CsGy1G006160Cucurbita moschata (Rifu)cgybcmoB067
CsGy1G006160Cucurbita moschata (Rifu)cgybcmoB082
CsGy1G006160Cucurbita moschata (Rifu)cgybcmoB095
CsGy1G006160Cucurbita pepo (Zucchini)cgybcpeB018
CsGy1G006160Cucurbita pepo (Zucchini)cgybcpeB046
CsGy1G006160Cucurbita pepo (Zucchini)cgybcpeB069
CsGy1G006160Cucurbita pepo (Zucchini)cgybcpeB128
CsGy1G006160Cucumber (Chinese Long) v2cgybcuB005
CsGy1G006160Cucumber (Chinese Long) v2cgybcuB015
CsGy1G006160Bottle gourd (USVL1VR-Ls)cgyblsiB069
CsGy1G006160Melon (DHL92) v3.5.1cgybmeB022
CsGy1G006160Melon (DHL92) v3.5.1cgybmeB052
CsGy1G006160Melon (DHL92) v3.6.1cgybmedB004
CsGy1G006160Melon (DHL92) v3.6.1cgybmedB020
CsGy1G006160Melon (DHL92) v3.6.1cgybmedB046
CsGy1G006160Watermelon (Charleston Gray)cgybwcgB080
CsGy1G006160Watermelon (97103) v1cgybwmB096
CsGy1G006160Wild cucumber (PI 183967)cgybcpiB005
CsGy1G006160Silver-seed gourdcarcgybB0393
CsGy1G006160Silver-seed gourdcarcgybB0469
CsGy1G006160Silver-seed gourdcarcgybB0516
CsGy1G006160Silver-seed gourdcarcgybB0518
CsGy1G006160Silver-seed gourdcarcgybB0595