Lsi02G001480 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi02G001480
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionGTPase IMAP family member 1, putative
Locationchr02 : 1222829 .. 1224894 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAAGTTCTAAAAATGTAAATTATATAATAATGGGCTATCCTATTCCAACTTAATTTATATTATAGTATGTGATAATAAAAAGGTTTAATTTATATATTTTGTTTTGGTTTCAGGGCAAATTTTTTTTTTAATGACCAATTAAGTTAATAGAAATGACGAAAGACAACGCAGGCTAATTACTAATTAGTTAACATTTTGAAGAGATTTGGGTTAGTTCAAACTCAAGGTGATGTGGAAATGGCTAATCACAATCGAGCTTGTTTAATTATACTTTAGAAATGCAATGGAGCAGGCCAAATTGGGTTATTATTAGGGCTTTTTAATAACAAACTCGGAATGAAAGACACCCAATTATCGCTTTTTTCGTCTCTTTTTAAAAATAAAGAAATAAGGAACCAATTATCAAATTTTCATTATAAAATCTGCTGACTATATATGACCAATTGCAATATGTTAACTATTTATATTTTATTTAATAATTTTGATGTAATTTTAGTATTTTTTTATTTATATTCTTTTTATGGTATTTTAAGTAGGATTATTTATGTTTTTTATCATGAACTATGATGCATTAGGATTTCTTTTATTGAGAGACTATTTAAAGTTTGACCATTGAGAGACTTTTTTTTTTTTTTTTTAATAACAGAATACTAGAGGGAGGGATCAGGAGGTGCACCGGGACATCTCAACCAGGTTGACACCTCCTTAGCACCCTCATCATGCCTTGATACTAATAGCGATATCATTCATATAACAAAAAGTTTGTACAAAGAGCTAGAGGATAGCTCTGTAACAAGAGGAGGTTGGTCAGGAAAATGGGCTAAAAAAACAATTCCAATTTGGGAATGATAATTTTTCTTTTAAGTTGATGACGTCATCAACTCAACATTTGCAATTCTTGATCTAGGGTTGCATGCGAAAGCATTTAGGTAAGATTGATCAACTTGCTTGTAGCCTTGAGTAGAGAATTAGTTCTCCTTATGTCTTGGATCAAAAGCTAATCTAAATCTAATTCTTCTCTTTAGATTGACATCAAATTGATTTGAGAGTTTTAGAATTTTATATTAAAGAGATAAATGAGTTCCTAATTTTTCGAATCGGTAGGATTTTTCATATCAGAATTTGTGAGACAAGATTGTTGAGATACTTTGTTACAAAATGAAGTGAATCTAAATTAATATGACCAAAGCAGATTCTAGAAAGAAAAAACAAATCTTATTAATTCGAGTCATATTAATATTTAATTGAGATAATCCACGCCAATGTTGACCCATTTTAAAGGAACGGTTAAACCAAAAACATCACCACCCCAACTTTATAATATTCTTATTATTATCTTCCAAACAAAGTTAAATTTATTTAATCGAATATTTTACAATTGAAAGTAATAATTGGTTACTTCTCATTAAAAAGCATATTAATAATCCACATTGAACAACTCGTTTTTGATTTGCCATTTACACATACGACCCTTCCAAAGGGTAATTTAACAAACAAAAATGTCCAAATTACTTTACACTAAGTTAAATTATAAAACTTATAATTTAAACTATCACATGCTATTATATAAACTTAGCAATTTGAGGGAGAGGGAACTCACAATTAATAGTATTACCATTCTCACCTTGAAAATCATGATCATTCTTATTAGAAGAATTATAAGTGCTATCAACAACTTTTTTAGGCTAATTACAAACTTCTTTAACACTTCAATATTATTCCAATCCCAATCCAATGACCTAGAAACGGAACCTCGTCACGAGCCGTTGGGCTCATGGCCGCGAACCGCGGCGGAGATAGTAATGCAGTGGGAAAAATTGATGGTTACATTTTGTGTAGGCTCAGCCATTGCCATAGCCACCGTATCTCTTCAAATTGAAACCAGGCTCTCTTTAATGTTTCATTTTCTGTCAGTTGTGTTAATGGGTTGCTTTGTTTTTATAGCCTCAGCCAAAGTCATTAATGTTAAGCAGCAAAGGGTTTCTCAAATTTTGTATTGTTTTGGTGGGTTTTGGTTTGTTACTGCCTTCTTCATTGCCATTGCCATTCCTTATACATTT

mRNA sequence

ATGGATAAAAAATGCAATGGAGCAGGCCAAATTGGGCTAATTACAAACTTCTTTAACACTTCAATATTATTCCAATCCCAATCCAATGACCTAGAAACGGAACCTCGTCACGAGCCGTTGGGCTCATGGCCGCGAACCGCGGCGGAGATAGTAATGCAGTGGGAAAAATTGATGGTTACATTTTGTGTAGGCTCAGCCATTGCCATAGCCACCGTATCTCTTCAAATTGAAACCAGGCTCTCTTTAATGTTTCATTTTCTGTCAGTTGTGTTAATGGGTTGCTTTGTTTTTATAGCCTCAGCCAAAGTCATTAATGTTAAGCAGCAAAGGGTTTCTCAAATTTTGTATTGTTTTGGTGGGTTTTGGTTTGTTACTGCCTTCTTCATTGCCATTGCCATTCCTTATACATTT

Coding sequence (CDS)

ATGGATAAAAAATGCAATGGAGCAGGCCAAATTGGGCTAATTACAAACTTCTTTAACACTTCAATATTATTCCAATCCCAATCCAATGACCTAGAAACGGAACCTCGTCACGAGCCGTTGGGCTCATGGCCGCGAACCGCGGCGGAGATAGTAATGCAGTGGGAAAAATTGATGGTTACATTTTGTGTAGGCTCAGCCATTGCCATAGCCACCGTATCTCTTCAAATTGAAACCAGGCTCTCTTTAATGTTTCATTTTCTGTCAGTTGTGTTAATGGGTTGCTTTGTTTTTATAGCCTCAGCCAAAGTCATTAATGTTAAGCAGCAAAGGGTTTCTCAAATTTTGTATTGTTTTGGTGGGTTTTGGTTTGTTACTGCCTTCTTCATTGCCATTGCCATTCCTTATACATTT

Protein sequence

MDKKCNGAGQIGLITNFFNTSILFQSQSNDLETEPRHEPLGSWPRTAAEIVMQWEKLMVTFCVGSAIAIATVSLQIETRLSLMFHFLSVVLMGCFVFIASAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPYTF
BLAST of Lsi02G001480 vs. TrEMBL
Match: A0A0A0LQB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.2e-14
Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 1

Query: 48  AEIVMQWEKLMVTFCVGSAIAIATVSLQIET--RLSLMFHFLSVVLMGCFVFIASAKVIN 107
           AE+V +W++++V  CV SAI IATVS+QIET  +L   F FLS+V++ CF F+  AK+  
Sbjct: 41  AEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKMTK 100

Query: 108 VKQQRVSQILYCFGGFWFVTAFFIAIAIPY 136
              + VS+ILYC GGF  VTAFFIA AIP+
Sbjct: 101 PIFKTVSKILYCVGGFLGVTAFFIATAIPF 130

BLAST of Lsi02G001480 vs. TrEMBL
Match: A0A0A0LSX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-12
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 1

Query: 47  AAEIVMQWEKLMVTFCVGSAIAIATVSLQIETRLSLMFHFLSVVLMGCFVFIASAKVINV 106
           AAE+V +W+ +++ FCV SAI IATVS+ I+T L   F  LS+ ++ CFV +  A++IN 
Sbjct: 26  AAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMINS 85

Query: 107 KQQRVSQILYCFGGFWFVTAFFIAIAIPY 136
             + +S+ILYC GG  + ++ FIA AIPY
Sbjct: 86  IFETLSKILYCVGGLLYASSCFIATAIPY 114

BLAST of Lsi02G001480 vs. TrEMBL
Match: A0A0A0LCY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 41/88 (46.59%), Postives = 63/88 (71.59%), Query Frame = 1

Query: 48  AEIVMQWEKLMVTFCVGSAIAIATVSLQIETRLSLMFHFLSVVLMGCFVFIASAKVINVK 107
           AE+V + +++++ FC+ SAI IATVS+Q +T+L   F FLS+ ++ CF+ +  A++I+  
Sbjct: 28  AEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAVLICFLSVGFARMISSI 87

Query: 108 QQRVSQILYCFGGFWFVTAFFIAIAIPY 136
            + +S+ILYCFGGF   T  FIA AIPY
Sbjct: 88  FKTLSKILYCFGGFLCATCCFIATAIPY 115

BLAST of Lsi02G001480 vs. TrEMBL
Match: A0A0A0LQP5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040510 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-07
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1

Query: 48  AEIVMQWEKLMVTFCVGSAIAIATVSLQIETRLSLMFHFLSVVLMGCFVFIASAKVINVK 107
           AE V + ++ ++  CV SAI I T S+QI+T+L   F  LS+ ++ CFV +  A++I   
Sbjct: 30  AETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSVVFARMIESV 89

Query: 108 QQRVSQILYCFGGFWFVTAFFIAIAIPY 136
            + +S+ILYC G F   T  FIA AI Y
Sbjct: 90  FRTLSEILYCVGDFMCATTCFIATAISY 117

BLAST of Lsi02G001480 vs. TrEMBL
Match: A0A061FYT3_THECC (GTPase IMAP family member 1, putative OS=Theobroma cacao GN=TCM_014409 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-07
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1

Query: 52  MQWEKLMVTFCVGSAIAIATVSLQI-ETRLSLMFHFLSVVLMGCFVFIASAKVI-NVKQQ 111
           + WEKL+V FC+GS++ IAT+  QI   RL + F FLS+ ++  F  +   K   N K  
Sbjct: 59  LAWEKLIVAFCLGSSLEIATLFAQIGPARLPVTFTFLSLAILLAFTCLCVGKYFSNSKFL 118

Query: 112 RVSQILYCFGGFWFVTAFFIAIAIPY 136
            ++++L   GGF+ VTAFFIAIAIP+
Sbjct: 119 TMARMLEQLGGFFVVTAFFIAIAIPF 144

BLAST of Lsi02G001480 vs. NCBI nr
Match: gi|700208994|gb|KGN64090.1| (hypothetical protein Csa_1G041520 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 4.6e-14
Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 1

Query: 48  AEIVMQWEKLMVTFCVGSAIAIATVSLQIET--RLSLMFHFLSVVLMGCFVFIASAKVIN 107
           AE+V +W++++V  CV SAI IATVS+QIET  +L   F FLS+V++ CF F+  AK+  
Sbjct: 41  AEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKMTK 100

Query: 108 VKQQRVSQILYCFGGFWFVTAFFIAIAIPY 136
              + VS+ILYC GGF  VTAFFIA AIP+
Sbjct: 101 PIFKTVSKILYCVGGFLGVTAFFIATAIPF 130

BLAST of Lsi02G001480 vs. NCBI nr
Match: gi|700208993|gb|KGN64089.1| (hypothetical protein Csa_1G040520 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-12
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 1

Query: 47  AAEIVMQWEKLMVTFCVGSAIAIATVSLQIETRLSLMFHFLSVVLMGCFVFIASAKVINV 106
           AAE+V +W+ +++ FCV SAI IATVS+ I+T L   F  LS+ ++ CFV +  A++IN 
Sbjct: 26  AAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMINS 85

Query: 107 KQQRVSQILYCFGGFWFVTAFFIAIAIPY 136
             + +S+ILYC GG  + ++ FIA AIPY
Sbjct: 86  IFETLSKILYCVGGLLYASSCFIATAIPY 114

BLAST of Lsi02G001480 vs. NCBI nr
Match: gi|700204732|gb|KGN59865.1| (hypothetical protein Csa_3G851175 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-11
Identity = 41/88 (46.59%), Postives = 63/88 (71.59%), Query Frame = 1

Query: 48  AEIVMQWEKLMVTFCVGSAIAIATVSLQIETRLSLMFHFLSVVLMGCFVFIASAKVINVK 107
           AE+V + +++++ FC+ SAI IATVS+Q +T+L   F FLS+ ++ CF+ +  A++I+  
Sbjct: 28  AEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAVLICFLSVGFARMISSI 87

Query: 108 QQRVSQILYCFGGFWFVTAFFIAIAIPY 136
            + +S+ILYCFGGF   T  FIA AIPY
Sbjct: 88  FKTLSKILYCFGGFLCATCCFIATAIPY 115

BLAST of Lsi02G001480 vs. NCBI nr
Match: gi|700208992|gb|KGN64088.1| (hypothetical protein Csa_1G040510 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-07
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1

Query: 48  AEIVMQWEKLMVTFCVGSAIAIATVSLQIETRLSLMFHFLSVVLMGCFVFIASAKVINVK 107
           AE V + ++ ++  CV SAI I T S+QI+T+L   F  LS+ ++ CFV +  A++I   
Sbjct: 30  AETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSVVFARMIESV 89

Query: 108 QQRVSQILYCFGGFWFVTAFFIAIAIPY 136
            + +S+ILYC G F   T  FIA AI Y
Sbjct: 90  FRTLSEILYCVGDFMCATTCFIATAISY 117

BLAST of Lsi02G001480 vs. NCBI nr
Match: gi|590669147|ref|XP_007037692.1| (GTPase IMAP family member 1, putative [Theobroma cacao])

HSP 1 Score: 62.8 bits (151), Expect = 5.5e-07
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1

Query: 52  MQWEKLMVTFCVGSAIAIATVSLQI-ETRLSLMFHFLSVVLMGCFVFIASAKVI-NVKQQ 111
           + WEKL+V FC+GS++ IAT+  QI   RL + F FLS+ ++  F  +   K   N K  
Sbjct: 59  LAWEKLIVAFCLGSSLEIATLFAQIGPARLPVTFTFLSLAILLAFTCLCVGKYFSNSKFL 118

Query: 112 RVSQILYCFGGFWFVTAFFIAIAIPY 136
            ++++L   GGF+ VTAFFIAIAIP+
Sbjct: 119 TMARMLEQLGGFFVVTAFFIAIAIPF 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQB6_CUCSA3.2e-1454.44Uncharacterized protein OS=Cucumis sativus GN=Csa_1G041520 PE=4 SV=1[more]
A0A0A0LSX4_CUCSA1.0e-1247.19Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040520 PE=4 SV=1[more]
A0A0A0LCY2_CUCSA1.1e-1146.59Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851175 PE=4 SV=1[more]
A0A0A0LQP5_CUCSA2.9e-0742.05Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040510 PE=4 SV=1[more]
A0A061FYT3_THECC3.8e-0745.35GTPase IMAP family member 1, putative OS=Theobroma cacao GN=TCM_014409 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700208994|gb|KGN64090.1|4.6e-1454.44hypothetical protein Csa_1G041520 [Cucumis sativus][more]
gi|700208993|gb|KGN64089.1|1.5e-1247.19hypothetical protein Csa_1G040520 [Cucumis sativus][more]
gi|700204732|gb|KGN59865.1|1.6e-1146.59hypothetical protein Csa_3G851175 [Cucumis sativus][more]
gi|700208992|gb|KGN64088.1|4.2e-0742.05hypothetical protein Csa_1G040510 [Cucumis sativus][more]
gi|590669147|ref|XP_007037692.1|5.5e-0745.35GTPase IMAP family member 1, putative [Theobroma cacao][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0034968 histone lysine methylation
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0009909 regulation of flower development
biological_process GO:0001510 RNA methylation
biological_process GO:0031118 rRNA pseudouridine synthesis
cellular_component GO:0005575 cellular_component
cellular_component GO:0005730 nucleolus
cellular_component GO:0005732 small nucleolar ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0030515 snoRNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G001480.1Lsi02G001480.1mRNA


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi02G001480Melon (DHL92) v3.5.1lsimeB179
Lsi02G001480Melon (DHL92) v3.5.1lsimeB209
Lsi02G001480Watermelon (Charleston Gray)lsiwcgB201
Lsi02G001480Watermelon (97103) v1lsiwmB223
Lsi02G001480Cucumber (Gy14) v2cgyblsiB021
Lsi02G001480Cucumber (Gy14) v2cgyblsiB036
Lsi02G001480Cucumber (Gy14) v2cgyblsiB315
Lsi02G001480Melon (DHL92) v3.6.1lsimedB177
Lsi02G001480Melon (DHL92) v3.6.1lsimedB189
Lsi02G001480Melon (DHL92) v3.6.1lsimedB216
Lsi02G001480Silver-seed gourdcarlsiB353
Lsi02G001480Silver-seed gourdcarlsiB417
Lsi02G001480Silver-seed gourdcarlsiB465
Lsi02G001480Silver-seed gourdcarlsiB467
Lsi02G001480Silver-seed gourdcarlsiB538
Lsi02G001480Cucumber (Chinese Long) v3cuclsiB024
Lsi02G001480Cucumber (Chinese Long) v3cuclsiB042
Lsi02G001480Cucumber (Chinese Long) v3cuclsiB367
Lsi02G001480Watermelon (97103) v2lsiwmbB195
Lsi02G001480Wax gourdlsiwgoB269
Lsi02G001480Wax gourdlsiwgoB290
Lsi02G001480Bottle gourd (USVL1VR-Ls)lsilsiB103
Lsi02G001480Bottle gourd (USVL1VR-Ls)lsilsiB113
Lsi02G001480Cucumber (Gy14) v1cgylsiB148
Lsi02G001480Cucumber (Gy14) v1cgylsiB334
Lsi02G001480Cucumber (Gy14) v1cgylsiB336
Lsi02G001480Cucurbita maxima (Rimu)cmalsiB054
Lsi02G001480Cucurbita maxima (Rimu)cmalsiB106
Lsi02G001480Cucurbita maxima (Rimu)cmalsiB208
Lsi02G001480Cucurbita maxima (Rimu)cmalsiB370
Lsi02G001480Cucurbita moschata (Rifu)cmolsiB042
Lsi02G001480Cucurbita moschata (Rifu)cmolsiB094
Lsi02G001480Cucurbita moschata (Rifu)cmolsiB198
Lsi02G001480Cucurbita moschata (Rifu)cmolsiB356
Lsi02G001480Cucurbita moschata (Rifu)cmolsiB361
Lsi02G001480Cucurbita pepo (Zucchini)cpelsiB024
Lsi02G001480Cucurbita pepo (Zucchini)cpelsiB026
Lsi02G001480Cucurbita pepo (Zucchini)cpelsiB286
Lsi02G001480Cucurbita pepo (Zucchini)cpelsiB542
Lsi02G001480Wild cucumber (PI 183967)cpilsiB024
Lsi02G001480Wild cucumber (PI 183967)cpilsiB025
Lsi02G001480Wild cucumber (PI 183967)cpilsiB042
Lsi02G001480Cucumber (Chinese Long) v2culsiB025
Lsi02G001480Cucumber (Chinese Long) v2culsiB042