Csa1G040510 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G040510
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 4007357 .. 4007836 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGGTTGGTGTGCTTTGATTGTGGCCGTGGGGGCTTGGTTTAGACAGCCGTATTGTGGAGCGAGGAGAAGCTTGGAAATAGTGGCGGAGACGGTGGAGGAGAGGAAAGAATTTATTATAGGATTATGTGTATCATCGGCAATAGGGATAGTAACAACGTCTGTTCAAATCAAAACCAAGCTTCCAAATTCATTTCAGTGTCTGTCCATGCCTATTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCGAATCAGTTTTCAGAACACTTTCAGAGATTCTGTATTGTGTTGGAGATTTCATGTGCGCTACAACCTGTTTCATTGCCACGGCCATTTCCTATGACGACGCACATTTTCATACCATCGTCATTGTCCTTTACTCAATCTTCTGTATCATCTGCATTATCTTCATCATCTTCATCTCCATCACCCACAACGACCCTTCATCACCTTCCTCCTCCAATATCTAG

mRNA sequence

ATGTTGGGTTGGTGTGCTTTGATTGTGGCCGTGGGGGCTTGGTTTAGACAGCCGTATTGTGGAGCGAGGAGAAGCTTGGAAATAGTGGCGGAGACGGTGGAGGAGAGGAAAGAATTTATTATAGGATTATGTGTATCATCGGCAATAGGGATAGTAACAACGTCTGTTCAAATCAAAACCAAGCTTCCAAATTCATTTCAGTGTCTGTCCATGCCTATTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCGAATCAGTTTTCAGAACACTTTCAGAGATTCTGTATTGTGTTGGAGATTTCATGTGCGCTACAACCTGTTTCATTGCCACGGCCATTTCCTATGACGACGCACATTTTCATACCATCGTCATTGTCCTTTACTCAATCTTCTGTATCATCTGCATTATCTTCATCATCTTCATCTCCATCACCCACAACGACCCTTCATCACCTTCCTCCTCCAATATCTAG

Coding sequence (CDS)

ATGTTGGGTTGGTGTGCTTTGATTGTGGCCGTGGGGGCTTGGTTTAGACAGCCGTATTGTGGAGCGAGGAGAAGCTTGGAAATAGTGGCGGAGACGGTGGAGGAGAGGAAAGAATTTATTATAGGATTATGTGTATCATCGGCAATAGGGATAGTAACAACGTCTGTTCAAATCAAAACCAAGCTTCCAAATTCATTTCAGTGTCTGTCCATGCCTATTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCGAATCAGTTTTCAGAACACTTTCAGAGATTCTGTATTGTGTTGGAGATTTCATGTGCGCTACAACCTGTTTCATTGCCACGGCCATTTCCTATGACGACGCACATTTTCATACCATCGTCATTGTCCTTTACTCAATCTTCTGTATCATCTGCATTATCTTCATCATCTTCATCTCCATCACCCACAACGACCCTTCATCACCTTCCTCCTCCAATATCTAG

Protein sequence

MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVLYSIFCIICIIFIIFISITHNDPSSPSSSNI*
Homology
[Close]
BLAST of Csa1G040510 vs. TrEMBL
Match: A0A0A0LQP5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040510 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 6.9e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60
           MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT
Sbjct: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60

Query: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120
           KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA
Sbjct: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120

Query: 121 HFHTIVIVLYSIFCIICIIFIIFISITHNDPSSPSSSNI 160
           HFHTIVIVLYSIFCIICIIFIIFISITHNDPSSPSSSNI
Sbjct: 121 HFHTIVIVLYSIFCIICIIFIIFISITHNDPSSPSSSNI 159

[Close]
BLAST of Csa1G040510 vs. TrEMBL
Match: A0A0A0LCY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.4e-53
Identity = 116/158 (73.42%), Postives = 129/158 (81.65%), Query Frame = 1 

Query: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60
           MLG CAL VAV  WFRQ Y G RRSLE+VAE VEERKE IIG C+SSAIGI T SVQ KT
Sbjct: 1   MLGQCALTVAV--WFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKT 60

Query: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120
           KLPNSFQ LS+ +L+CF+SV FARMI S+F+TLS+ILYC G F+CAT CFIATAI Y D 
Sbjct: 61  KLPNSFQFLSIAVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPY-DT 120

Query: 121 HFHTIVIVLYSIFCIICIIFIIFISITHNDPSSPSSSN 159
           HFH IVIVLYSIF   CIIF++ ISITHN PSSPSSS+
Sbjct: 121 HFHIIVIVLYSIF---CIIFVMLISITHN-PSSPSSSH 151

[Close]
BLAST of Csa1G040510 vs. TrEMBL
Match: A0A0A0LSX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.5e-34
Identity = 88/153 (57.52%), Postives = 100/153 (65.36%), Query Frame = 1 

Query: 6   ALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNS 65
           ALIV    WFRQ Y G RRS E+ AE VEE K+ IIG CVSSAIGI T SV IKT+LPNS
Sbjct: 4   ALIVGA-VWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNS 63

Query: 66  FQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTI 125
           FQ LS+ +LLCFVSVVFARMI S+F TLS+ILYCVG  + A++CFIATAI Y  +     
Sbjct: 64  FQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYASSF---- 123

Query: 126 VIVLYSIFCIICIIFIIFISITHNDPSSPSSSN 159
                               ITHN PS PSSS+
Sbjct: 124 --------------------ITHN-PSPPSSSD 130

[Close]
BLAST of Csa1G040510 vs. TrEMBL
Match: A0A0A0LQB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-25
Identity = 69/132 (52.27%), Postives = 92/132 (69.70%), Query Frame = 1 

Query: 24  RSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT--KLPNSFQCLSMPILLCFVSVV 83
           R L +VAE VEE KE I+ LCVSSAIGI T SVQI+T  +LP +FQ LS+ +LLCF  V 
Sbjct: 35  RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVG 94

Query: 84  FARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVLYSIFCIICIIFI 143
           FA+M + +F+T+S+ILYCVG F+  T  FIATAI +   +F  I+ +LY +F   C IF+
Sbjct: 95  FAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPF-APYFQIIIFILYLLF---CFIFM 154

Query: 144 IFISITHNDPSS 154
           +  +I +  PSS
Sbjct: 155 LITTIHNQQPSS 162

[Close]
BLAST of Csa1G040510 vs. TrEMBL
Match: A0A0A0LEV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000430 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 52/131 (39.69%), Postives = 80/131 (61.07%), Query Frame = 1 

Query: 26  LEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSVVFARM 85
           +E+VA+ VEE+K  IIG   +    I   SVQ K KLP+SF+ +S+  LLC +  V A +
Sbjct: 10  VEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLLCFVSAMI 69

Query: 86  IESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVLYSIFCIICIIFIIFIS 145
           I+  F+T +++LY +G F C T+  IA AI     +FH ++I+L   F I CI  +I +S
Sbjct: 70  IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIP-SQMYFHVLLILL---FLISCITLVILMS 129

Query: 146 ITHNDPSSPSS 157
            T + P+S ++
Sbjct: 130 NTCSPPNSTTN 136

[Close]
BLAST of Csa1G040510 vs. NCBI nr
Match: gi|700208992|gb|KGN64088.1| (hypothetical protein Csa_1G040510 [Cucumis sativus])

HSP 1 Score: 321.2 bits (822), Expect = 1.0e-84
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60
           MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT
Sbjct: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60

Query: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120
           KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA
Sbjct: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120

Query: 121 HFHTIVIVLYSIFCIICIIFIIFISITHNDPSSPSSSNI 160
           HFHTIVIVLYSIFCIICIIFIIFISITHNDPSSPSSSNI
Sbjct: 121 HFHTIVIVLYSIFCIICIIFIIFISITHNDPSSPSSSNI 159

[Close]
BLAST of Csa1G040510 vs. NCBI nr
Match: gi|700204732|gb|KGN59865.1| (hypothetical protein Csa_3G851175 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 2.0e-53
Identity = 116/158 (73.42%), Postives = 129/158 (81.65%), Query Frame = 1 

Query: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60
           MLG CAL VAV  WFRQ Y G RRSLE+VAE VEERKE IIG C+SSAIGI T SVQ KT
Sbjct: 1   MLGQCALTVAV--WFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKT 60

Query: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120
           KLPNSFQ LS+ +L+CF+SV FARMI S+F+TLS+ILYC G F+CAT CFIATAI Y D 
Sbjct: 61  KLPNSFQFLSIAVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPY-DT 120

Query: 121 HFHTIVIVLYSIFCIICIIFIIFISITHNDPSSPSSSN 159
           HFH IVIVLYSIF   CIIF++ ISITHN PSSPSSS+
Sbjct: 121 HFHIIVIVLYSIF---CIIFVMLISITHN-PSSPSSSH 151

[Close]
BLAST of Csa1G040510 vs. NCBI nr
Match: gi|700208993|gb|KGN64089.1| (hypothetical protein Csa_1G040520 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 3.6e-34
Identity = 88/153 (57.52%), Postives = 100/153 (65.36%), Query Frame = 1 

Query: 6   ALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNS 65
           ALIV    WFRQ Y G RRS E+ AE VEE K+ IIG CVSSAIGI T SV IKT+LPNS
Sbjct: 4   ALIVGA-VWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNS 63

Query: 66  FQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTI 125
           FQ LS+ +LLCFVSVVFARMI S+F TLS+ILYCVG  + A++CFIATAI Y  +     
Sbjct: 64  FQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYASSF---- 123

Query: 126 VIVLYSIFCIICIIFIIFISITHNDPSSPSSSN 159
                               ITHN PS PSSS+
Sbjct: 124 --------------------ITHN-PSPPSSSD 130

[Close]
BLAST of Csa1G040510 vs. NCBI nr
Match: gi|700208994|gb|KGN64090.1| (hypothetical protein Csa_1G041520 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-25
Identity = 69/132 (52.27%), Postives = 92/132 (69.70%), Query Frame = 1 

Query: 24  RSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT--KLPNSFQCLSMPILLCFVSVV 83
           R L +VAE VEE KE I+ LCVSSAIGI T SVQI+T  +LP +FQ LS+ +LLCF  V 
Sbjct: 35  RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVG 94

Query: 84  FARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVLYSIFCIICIIFI 143
           FA+M + +F+T+S+ILYCVG F+  T  FIATAI +   +F  I+ +LY +F   C IF+
Sbjct: 95  FAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPF-APYFQIIIFILYLLF---CFIFM 154

Query: 144 IFISITHNDPSS 154
           +  +I +  PSS
Sbjct: 155 LITTIHNQQPSS 162

[Close]
BLAST of Csa1G040510 vs. NCBI nr
Match: gi|700205416|gb|KGN60535.1| (hypothetical protein Csa_2G000430 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-15
Identity = 52/131 (39.69%), Postives = 80/131 (61.07%), Query Frame = 1 

Query: 26  LEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSVVFARM 85
           +E+VA+ VEE+K  IIG   +    I   SVQ K KLP+SF+ +S+  LLC +  V A +
Sbjct: 10  VEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLLCFVSAMI 69

Query: 86  IESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVLYSIFCIICIIFIIFIS 145
           I+  F+T +++LY +G F C T+  IA AI     +FH ++I+L   F I CI  +I +S
Sbjct: 70  IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIP-SQMYFHVLLILL---FLISCITLVILMS 129

Query: 146 ITHNDPSSPSS 157
            T + P+S ++
Sbjct: 130 NTCSPPNSTTN 136

The following BLAST results are available for this feature:
BLAST of Csa1G040510 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQP5_CUCSA6.9e-85100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040510 PE=4 SV=1[more]
A0A0A0LCY2_CUCSA1.4e-5373.42Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851175 PE=4 SV=1[more]
A0A0A0LSX4_CUCSA2.5e-3457.52Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040520 PE=4 SV=1[more]
A0A0A0LQB6_CUCSA1.2e-2552.27Uncharacterized protein OS=Cucumis sativus GN=Csa_1G041520 PE=4 SV=1[more]
A0A0A0LEV1_CUCSA1.5e-1539.69Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000430 PE=4 SV=1[more]
BLAST of Csa1G040510 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208992|gb|KGN64088.1|1.0e-84100.00hypothetical protein Csa_1G040510 [Cucumis sativus][more]
gi|700204732|gb|KGN59865.1|2.0e-5373.42hypothetical protein Csa_3G851175 [Cucumis sativus][more]
gi|700208993|gb|KGN64089.1|3.6e-3457.52hypothetical protein Csa_1G040520 [Cucumis sativus][more]
gi|700208994|gb|KGN64090.1|1.8e-2552.27hypothetical protein Csa_1G041520 [Cucumis sativus][more]
gi|700205416|gb|KGN60535.1|2.2e-1539.69hypothetical protein Csa_2G000430 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0034968 histone lysine methylation
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0009909 regulation of flower development
biological_process GO:0001510 RNA methylation
biological_process GO:0031118 rRNA pseudouridine synthesis
cellular_component GO:0005575 cellular_component
cellular_component GO:0005730 nucleolus
cellular_component GO:0005732 small nucleolar ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0030515 snoRNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU125537cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G040510.1Csa1G040510.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU125537CU125537transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G040510Cla018532Watermelon (97103) v1cuwmB062
Csa1G040510ClCG04G011470Watermelon (Charleston Gray)cuwcgB057
Csa1G040510Lsi02G001480Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G040510Cla97C04G078310Watermelon (97103) v2cuwmbB054
Csa1G040510Bhi08G000879Wax gourdcuwgoB050
Csa1G040510CSPI01G06480Wild cucumber (PI 183967)cpicuB000
Csa1G040510CmaCh18G000130Cucurbita maxima (Rimu)cmacuB405
Csa1G040510Cp4.1LG20g00960Cucurbita pepo (Zucchini)cpecuB505
Csa1G040510Cp4.1LG09g11390Cucurbita pepo (Zucchini)cpecuB023
Csa1G040510CsGy1G006160Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G040510Watermelon (97103) v2cuwmbB080
Csa1G040510Wax gourdcuwgoB106
Csa1G040510Cucumber (Chinese Long) v2cucuB000
Csa1G040510Cucumber (Chinese Long) v2cucuB003
Csa1G040510Cucumber (Gy14) v1cgycuB137
Csa1G040510Cucumber (Gy14) v1cgycuB302
Csa1G040510Cucurbita maxima (Rimu)cmacuB069
Csa1G040510Cucurbita maxima (Rimu)cmacuB088
Csa1G040510Cucurbita maxima (Rimu)cmacuB217
Csa1G040510Cucurbita maxima (Rimu)cmacuB390
Csa1G040510Cucurbita moschata (Rifu)cmocuB059
Csa1G040510Cucurbita moschata (Rifu)cmocuB077
Csa1G040510Cucurbita moschata (Rifu)cmocuB202
Csa1G040510Cucurbita moschata (Rifu)cmocuB380
Csa1G040510Cucurbita moschata (Rifu)cmocuB394
Csa1G040510Melon (DHL92) v3.5.1cumeB027
Csa1G040510Melon (DHL92) v3.5.1cumeB056
Csa1G040510Watermelon (Charleston Gray)cuwcgB083
Csa1G040510Watermelon (97103) v1cuwmB096
Csa1G040510Cucurbita pepo (Zucchini)cpecuB029
Csa1G040510Cucurbita pepo (Zucchini)cpecuB357
Csa1G040510Cucurbita pepo (Zucchini)cpecuB655
Csa1G040510Bottle gourd (USVL1VR-Ls)culsiB072
Csa1G040510Cucumber (Gy14) v2cgybcuB004
Csa1G040510Cucumber (Gy14) v2cgybcuB013
Csa1G040510Melon (DHL92) v3.6.1cumedB022
Csa1G040510Melon (DHL92) v3.6.1cumedB048
Csa1G040510Silver-seed gourdcarcuB0415
Csa1G040510Silver-seed gourdcarcuB0492
Csa1G040510Silver-seed gourdcarcuB0539
Csa1G040510Silver-seed gourdcarcuB0542
Csa1G040510Silver-seed gourdcarcuB0623