CsaV3_1G006320 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G006320
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionLob domain-containing protein 1
Locationchr1 : 4028648 .. 4028948 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCTACGGTGGAGTGAGGCGGAGCTTTGAAGTGGCGGCAGAGATGGTGGAGGAGTGGAAAGACATGATTATAGGATTCTGTGTGTCATCAGCTATTGGAATAGCAACAGTGTCTGTTCATATCAAAACCGAGCTTCCAAATTCATTTCAGCTTCTATCCATTGCTGTTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCAACTCCATTTTCGAAACACTTTCAAAGATTCTGTATTGTGTTGGCGGCTTATTGTATGCCTCAAGCTGTTTCATTGCTACGGCTATTCCCTATG

mRNA sequence

GCCTACGGTGGAGTGAGGCGGAGCTTTGAAGTGGCGGCAGAGATGGTGGAGGAGTGGAAAGACATGATTATAGGATTCTGTGTGTCATCAGCTATTGGAATAGCAACAGTGTCTGTTCATATCAAAACCGAGCTTCCAAATTCATTTCAGCTTCTATCCATTGCTGTTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCAACTCCATTTTCGAAACACTTTCAAAGATTCTGTATTGTGTTGGCGGCTTATTGTATGCCTCAAGCTGTTTCATTGCTACGGCTATTCCCTATG

Coding sequence (CDS)

GCCTACGGTGGAGTGAGGCGGAGCTTTGAAGTGGCGGCAGAGATGGTGGAGGAGTGGAAAGACATGATTATAGGATTCTGTGTGTCATCAGCTATTGGAATAGCAACAGTGTCTGTTCATATCAAAACCGAGCTTCCAAATTCATTTCAGCTTCTATCCATTGCTGTTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCAACTCCATTTTCGAAACACTTTCAAAGATTCTGTATTGTGTTGGCGGCTTATTGTATGCCTCAAGCTGTTTCATTGCTACGGCTATTCCCTATG

Protein sequence

AYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYX
Homology
[Close]
BLAST of CsaV3_1G006320 vs. NCBI nr
Match: KGN64089.1 (hypothetical protein Csa_1G040520 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 5.0e-46
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   AYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCF 60
           AYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCF
Sbjct: 15  AYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCF 74

Query: 61  VSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 101
           VSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY
Sbjct: 75  VSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 114

[Close]
BLAST of CsaV3_1G006320 vs. NCBI nr
Match: KGN59865.1 (hypothetical protein Csa_3G851175 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 4.4e-34
Identity = 80/99 (80.81%), Postives = 88/99 (88.89%), Query Frame = 0 

Query: 2   YGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFV 61
           YGGVRRS EV AEMVEE K+MIIGFC+SSAIGIATVSV  KT+LPNSFQ LSIAVL+CF+
Sbjct: 17  YGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAVLICFL 76

Query: 62  SVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 101
           SV FARMI+SIF+TLSKILYC GG L A+ CFIATAIPY
Sbjct: 77  SVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPY 115

[Close]
BLAST of CsaV3_1G006320 vs. NCBI nr
Match: KGN64088.1 (hypothetical protein Csa_1G040510 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 9.5e-29
Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 0 

Query: 2   YGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFV 61
           Y G RRS E+ AE VEE K+ IIG CVSSAIGI T SV IKT+LPNSFQ LS+ +LLCFV
Sbjct: 19  YCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFV 78

Query: 62  SVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 101
           SVVFARMI S+F TLS+ILYCVG  + A++CFIATAI Y
Sbjct: 79  SVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISY 117

[Close]
BLAST of CsaV3_1G006320 vs. NCBI nr
Match: KGN64090.1 (hypothetical protein Csa_1G041520 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 1.0e-22
Identity = 64/101 (63.37%), Postives = 77/101 (76.24%), Query Frame = 0 

Query: 2   YGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKT--ELPNSFQLLSIAVLLC 61
           +GG  R   + AEMVEEWK+MI+  CVSSAIGIATVSV I+T  +LP +FQ LSI VLLC
Sbjct: 32  HGG--RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLC 91

Query: 62  FVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 101
           F  V FA+M   IF+T+SKILYCVGG L  ++ FIATAIP+
Sbjct: 92  FGFVGFAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPF 130

[Close]
BLAST of CsaV3_1G006320 vs. NCBI nr
Match: KGN60535.1 (hypothetical protein Csa_2G000430 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 7.6e-10
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 0 

Query: 3   GGVRRSF-EVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFV 62
           G V  SF EV A+MVEE K  IIGF  +    IA +SV  K +LP+SF+ +SI  LLC +
Sbjct: 3   GEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLL 62

Query: 63  SVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIP 100
             V A +I+  F+T +K+LY +G     +S  IA AIP
Sbjct: 63  CFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIP 100

[Close]
BLAST of CsaV3_1G006320 vs. TrEMBL
Match: tr|A0A0A0LSX4|A0A0A0LSX4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.3e-46
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   AYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCF 60
           AYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCF
Sbjct: 15  AYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCF 74

Query: 61  VSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 101
           VSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY
Sbjct: 75  VSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 114

[Close]
BLAST of CsaV3_1G006320 vs. TrEMBL
Match: tr|A0A0A0LCY2|A0A0A0LCY2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.9e-34
Identity = 80/99 (80.81%), Postives = 88/99 (88.89%), Query Frame = 0 

Query: 2   YGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFV 61
           YGGVRRS EV AEMVEE K+MIIGFC+SSAIGIATVSV  KT+LPNSFQ LSIAVL+CF+
Sbjct: 17  YGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAVLICFL 76

Query: 62  SVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 101
           SV FARMI+SIF+TLSKILYC GG L A+ CFIATAIPY
Sbjct: 77  SVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPY 115

[Close]
BLAST of CsaV3_1G006320 vs. TrEMBL
Match: tr|A0A0A0LQP5|A0A0A0LQP5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.3e-29
Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 0 

Query: 2   YGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFV 61
           Y G RRS E+ AE VEE K+ IIG CVSSAIGI T SV IKT+LPNSFQ LS+ +LLCFV
Sbjct: 19  YCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFV 78

Query: 62  SVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 101
           SVVFARMI S+F TLS+ILYCVG  + A++CFIATAI Y
Sbjct: 79  SVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISY 117

[Close]
BLAST of CsaV3_1G006320 vs. TrEMBL
Match: tr|A0A0A0LQB6|A0A0A0LQB6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.7e-23
Identity = 64/101 (63.37%), Postives = 77/101 (76.24%), Query Frame = 0 

Query: 2   YGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKT--ELPNSFQLLSIAVLLC 61
           +GG  R   + AEMVEEWK+MI+  CVSSAIGIATVSV I+T  +LP +FQ LSI VLLC
Sbjct: 32  HGG--RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLC 91

Query: 62  FVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 101
           F  V FA+M   IF+T+SKILYCVGG L  ++ FIATAIP+
Sbjct: 92  FGFVGFAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPF 130

[Close]
BLAST of CsaV3_1G006320 vs. TrEMBL
Match: tr|A0A0A0LEV1|A0A0A0LEV1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.0e-10
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 0 

Query: 3   GGVRRSF-EVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFV 62
           G V  SF EV A+MVEE K  IIGF  +    IA +SV  K +LP+SF+ +SI  LLC +
Sbjct: 3   GEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLL 62

Query: 63  SVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIP 100
             V A +I+  F+T +K+LY +G     +S  IA AIP
Sbjct: 63  CFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIP 100

The following BLAST results are available for this feature:
BLAST of CsaV3_1G006320 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64089.15.0e-46100.00hypothetical protein Csa_1G040520 [Cucumis sativus][more]
KGN59865.14.4e-3480.81hypothetical protein Csa_3G851175 [Cucumis sativus][more]
KGN64088.19.5e-2970.71hypothetical protein Csa_1G040510 [Cucumis sativus][more]
KGN64090.11.0e-2263.37hypothetical protein Csa_1G041520 [Cucumis sativus][more]
KGN60535.17.6e-1045.92hypothetical protein Csa_2G000430 [Cucumis sativus][more]
BLAST of CsaV3_1G006320 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006320 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LSX4|A0A0A0LSX4_CUCSA3.3e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1[more]
tr|A0A0A0LCY2|A0A0A0LCY2_CUCSA2.9e-3480.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1[more]
tr|A0A0A0LQP5|A0A0A0LQP5_CUCSA6.3e-2970.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1[more]
tr|A0A0A0LQB6|A0A0A0LQB6_CUCSA6.7e-2363.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1[more]
tr|A0A0A0LEV1|A0A0A0LEV1_CUCSA5.0e-1045.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0034968 histone lysine methylation
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0009909 regulation of flower development
biological_process GO:0001510 RNA methylation
biological_process GO:0031118 rRNA pseudouridine synthesis
cellular_component GO:0005575 cellular_component
cellular_component GO:0005730 nucleolus
cellular_component GO:0005732 small nucleolar ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0030515 snoRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G006320.1CsaV3_1G006320.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34741FAMILY NOT NAMEDcoord: 11..100

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G006320CSPI01G06480Wild cucumber (PI 183967)cpicucB001
CsaV3_1G006320CmaCh18G000130Cucurbita maxima (Rimu)cmacucB0483
CsaV3_1G006320Cp4.1LG20g00960Cucurbita pepo (Zucchini)cpecucB0623
CsaV3_1G006320Cp4.1LG09g11390Cucurbita pepo (Zucchini)cpecucB0028
CsaV3_1G006320CsGy1G006160Cucumber (Gy14) v2cgybcucB002
CsaV3_1G006320Cla018532Watermelon (97103) v1cucwmB070
CsaV3_1G006320ClCG04G011470Watermelon (Charleston Gray)cucwcgB063
CsaV3_1G006320Lsi02G001480Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G006320Cla97C04G078310Watermelon (97103) v2cucwmbB054
CsaV3_1G006320Bhi08G000879Wax gourdcucwgoB052
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G006320Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G006320Cucumber (Chinese Long) v3cuccucB004
CsaV3_1G006320Cucumber (Chinese Long) v3cuccucB034
CsaV3_1G006320Silver-seed gourdcarcucB0418
CsaV3_1G006320Silver-seed gourdcarcucB0495
CsaV3_1G006320Silver-seed gourdcarcucB0545
CsaV3_1G006320Silver-seed gourdcarcucB0548
CsaV3_1G006320Silver-seed gourdcarcucB0630
CsaV3_1G006320Cucumber (Gy14) v2cgybcucB004
CsaV3_1G006320Cucumber (Gy14) v2cgybcucB012
CsaV3_1G006320Cucumber (Gy14) v2cgybcucB200
CsaV3_1G006320Cucumber (Gy14) v1cgycucB143
CsaV3_1G006320Cucumber (Gy14) v1cgycucB315
CsaV3_1G006320Cucumber (Gy14) v1cgycucB317
CsaV3_1G006320Cucumber (Gy14) v1cgycucB434
CsaV3_1G006320Cucurbita maxima (Rimu)cmacucB0076
CsaV3_1G006320Cucurbita maxima (Rimu)cmacucB0102
CsaV3_1G006320Cucurbita maxima (Rimu)cmacucB0248
CsaV3_1G006320Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G006320Cucurbita maxima (Rimu)cmacucB0816
CsaV3_1G006320Cucurbita moschata (Rifu)cmocucB0063
CsaV3_1G006320Cucurbita moschata (Rifu)cmocucB0092
CsaV3_1G006320Cucurbita moschata (Rifu)cmocucB0234
CsaV3_1G006320Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G006320Cucurbita moschata (Rifu)cmocucB0466
CsaV3_1G006320Cucurbita moschata (Rifu)cmocucB0471
CsaV3_1G006320Cucurbita pepo (Zucchini)cpecucB0020
CsaV3_1G006320Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G006320Cucurbita pepo (Zucchini)cpecucB0436
CsaV3_1G006320Cucurbita pepo (Zucchini)cpecucB0472
CsaV3_1G006320Cucurbita pepo (Zucchini)cpecucB0816
CsaV3_1G006320Wild cucumber (PI 183967)cpicucB004
CsaV3_1G006320Wild cucumber (PI 183967)cpicucB253
CsaV3_1G006320Bottle gourd (USVL1VR-Ls)cuclsiB063
CsaV3_1G006320Bottle gourd (USVL1VR-Ls)cuclsiB083
CsaV3_1G006320Melon (DHL92) v3.5.1cucmeB004
CsaV3_1G006320Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G006320Melon (DHL92) v3.5.1cucmeB056
CsaV3_1G006320Melon (DHL92) v3.6.1cucmedB004
CsaV3_1G006320Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G006320Melon (DHL92) v3.6.1cucmedB053
CsaV3_1G006320Watermelon (Charleston Gray)cucwcgB069
CsaV3_1G006320Watermelon (Charleston Gray)cucwcgB090
CsaV3_1G006320Watermelon (97103) v1cucwmB043
CsaV3_1G006320Watermelon (97103) v1cucwmB107
CsaV3_1G006320Watermelon (97103) v2cucwmbB058
CsaV3_1G006320Watermelon (97103) v2cucwmbB078
CsaV3_1G006320Wax gourdcucwgoB077
CsaV3_1G006320Wax gourdcucwgoB117