CsaV3_1G006320.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G006320.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Lob domain-containing protein 1
Location	chr1 : 4028648 .. 4028948 (+)
Sequence length	301

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTACGGTGGAGTGAGGCGGAGCTTTGAAGTGGCGGCAGAGATGGTGGAGGAGTGGAAAGACATGATTATAGGATTCTGTGTGTCATCAGCTATTGGAATAGCAACAGTGTCTGTTCATATCAAAACCGAGCTTCCAAATTCATTTCAGCTTCTATCCATTGCTGTTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCAACTCCATTTTCGAAACACTTTCAAAGATTCTGTATTGTGTTGGCGGCTTATTGTATGCCTCAAGCTGTTTCATTGCTACGGCTATTCCCTATG

mRNA sequence

GCCTACGGTGGAGTGAGGCGGAGCTTTGAAGTGGCGGCAGAGATGGTGGAGGAGTGGAAAGACATGATTATAGGATTCTGTGTGTCATCAGCTATTGGAATAGCAACAGTGTCTGTTCATATCAAAACCGAGCTTCCAAATTCATTTCAGCTTCTATCCATTGCTGTTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCAACTCCATTTTCGAAACACTTTCAAAGATTCTGTATTGTGTTGGCGGCTTATTGTATGCCTCAAGCTGTTTCATTGCTACGGCTATTCCCTATG

Coding sequence (CDS)

GCCTACGGTGGAGTGAGGCGGAGCTTTGAAGTGGCGGCAGAGATGGTGGAGGAGTGGAAAGACATGATTATAGGATTCTGTGTGTCATCAGCTATTGGAATAGCAACAGTGTCTGTTCATATCAAAACCGAGCTTCCAAATTCATTTCAGCTTCTATCCATTGCTGTTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCAACTCCATTTTCGAAACACTTTCAAAGATTCTGTATTGTGTTGGCGGCTTATTGTATGCCTCAAGCTGTTTCATTGCTACGGCTATTCCCTATG

Protein sequence

AYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYX

Homology

[Close]

BLAST of CsaV3_1G006320.1 vs. NCBI nr
Match: KGN64089.1 (hypothetical protein Csa_1G040520 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 5.0e-46
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   AYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCF 60
           AYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCF
Sbjct: 15  AYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCF 74

Query: 61  VSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 101
           VSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY
Sbjct: 75  VSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 114

[Close]

BLAST of CsaV3_1G006320.1 vs. NCBI nr
Match: KGN59865.1 (hypothetical protein Csa_3G851175 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 4.4e-34
Identity = 80/99 (80.81%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 2   YGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFV 61
           YGGVRRS EV AEMVEE K+MIIGFC+SSAIGIATVSV  KT+LPNSFQ LSIAVL+CF+
Sbjct: 17  YGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAVLICFL 76

Query: 62  SVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 101
           SV FARMI+SIF+TLSKILYC GG L A+ CFIATAIPY
Sbjct: 77  SVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPY 115

[Close]

BLAST of CsaV3_1G006320.1 vs. NCBI nr
Match: KGN64088.1 (hypothetical protein Csa_1G040510 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 9.5e-29
Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 2   YGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFV 61
           Y G RRS E+ AE VEE K+ IIG CVSSAIGI T SV IKT+LPNSFQ LS+ +LLCFV
Sbjct: 19  YCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFV 78

Query: 62  SVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 101
           SVVFARMI S+F TLS+ILYCVG  + A++CFIATAI Y
Sbjct: 79  SVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISY 117

[Close]

BLAST of CsaV3_1G006320.1 vs. NCBI nr
Match: KGN64090.1 (hypothetical protein Csa_1G041520 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 1.0e-22
Identity = 64/101 (63.37%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 2   YGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKT--ELPNSFQLLSIAVLLC 61
           +GG  R   + AEMVEEWK+MI+  CVSSAIGIATVSV I+T  +LP +FQ LSI VLLC
Sbjct: 32  HGG--RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLC 91

Query: 62  FVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 101
           F  V FA+M   IF+T+SKILYCVGG L  ++ FIATAIP+
Sbjct: 92  FGFVGFAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPF 130

[Close]

BLAST of CsaV3_1G006320.1 vs. NCBI nr
Match: KGN60535.1 (hypothetical protein Csa_2G000430 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 7.6e-10
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 0


Query: 3   GGVRRSF-EVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFV 62
           G V  SF EV A+MVEE K  IIGF  +    IA +SV  K +LP+SF+ +SI  LLC +
Sbjct: 3   GEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLL 62

Query: 63  SVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIP 100
             V A +I+  F+T +K+LY +G     +S  IA AIP
Sbjct: 63  CFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIP 100

[Close]

BLAST of CsaV3_1G006320.1 vs. TrEMBL
Match: tr|A0A0A0LSX4|A0A0A0LSX4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.3e-46
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   AYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCF 60
           AYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCF
Sbjct: 15  AYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCF 74

Query: 61  VSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 101
           VSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY
Sbjct: 75  VSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 114

[Close]

BLAST of CsaV3_1G006320.1 vs. TrEMBL
Match: tr|A0A0A0LCY2|A0A0A0LCY2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.9e-34
Identity = 80/99 (80.81%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 2   YGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFV 61
           YGGVRRS EV AEMVEE K+MIIGFC+SSAIGIATVSV  KT+LPNSFQ LSIAVL+CF+
Sbjct: 17  YGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAVLICFL 76

Query: 62  SVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 101
           SV FARMI+SIF+TLSKILYC GG L A+ CFIATAIPY
Sbjct: 77  SVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPY 115

[Close]

BLAST of CsaV3_1G006320.1 vs. TrEMBL
Match: tr|A0A0A0LQP5|A0A0A0LQP5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.3e-29
Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 2   YGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFV 61
           Y G RRS E+ AE VEE K+ IIG CVSSAIGI T SV IKT+LPNSFQ LS+ +LLCFV
Sbjct: 19  YCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFV 78

Query: 62  SVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 101
           SVVFARMI S+F TLS+ILYCVG  + A++CFIATAI Y
Sbjct: 79  SVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISY 117

[Close]

BLAST of CsaV3_1G006320.1 vs. TrEMBL
Match: tr|A0A0A0LQB6|A0A0A0LQB6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.7e-23
Identity = 64/101 (63.37%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 2   YGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKT--ELPNSFQLLSIAVLLC 61
           +GG  R   + AEMVEEWK+MI+  CVSSAIGIATVSV I+T  +LP +FQ LSI VLLC
Sbjct: 32  HGG--RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLC 91

Query: 62  FVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 101
           F  V FA+M   IF+T+SKILYCVGG L  ++ FIATAIP+
Sbjct: 92  FGFVGFAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPF 130

[Close]

BLAST of CsaV3_1G006320.1 vs. TrEMBL
Match: tr|A0A0A0LEV1|A0A0A0LEV1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.0e-10
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 0


Query: 3   GGVRRSF-EVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFV 62
           G V  SF EV A+MVEE K  IIGF  +    IA +SV  K +LP+SF+ +SI  LLC +
Sbjct: 3   GEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLL 62

Query: 63  SVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIP 100
             V A +I+  F+T +K+LY +G     +S  IA AIP
Sbjct: 63  CFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIP 100

The following BLAST results are available for this feature:

BLAST of CsaV3_1G006320.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64089.1	5.0e-46	100.00	hypothetical protein Csa_1G040520 [Cucumis sativus]	[more]
KGN59865.1	4.4e-34	80.81	hypothetical protein Csa_3G851175 [Cucumis sativus]	[more]
KGN64088.1	9.5e-29	70.71	hypothetical protein Csa_1G040510 [Cucumis sativus]	[more]
KGN64090.1	1.0e-22	63.37	hypothetical protein Csa_1G041520 [Cucumis sativus]	[more]
KGN60535.1	7.6e-10	45.92	hypothetical protein Csa_2G000430 [Cucumis sativus]	[more]

BLAST of CsaV3_1G006320.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G006320.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G006320.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSX4\|A0A0A0LSX4_CUCSA	3.3e-46	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1	[more]
tr\|A0A0A0LCY2\|A0A0A0LCY2_CUCSA	2.9e-34	80.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1	[more]
tr\|A0A0A0LQP5\|A0A0A0LQP5_CUCSA	6.3e-29	70.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1	[more]
tr\|A0A0A0LQB6\|A0A0A0LQB6_CUCSA	6.7e-23	63.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1	[more]
tr\|A0A0A0LEV1\|A0A0A0LEV1_CUCSA	5.0e-10	45.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_1G006320	CsaV3_1G006320	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G006320.1.exon1	CsaV3_1G006320.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G006320.1.cds1	CsaV3_1G006320.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G006320.1	CsaV3_1G006320.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34741	FAMILY NOT NAMED	coord: 11..100