CsGy1G006160.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G006160.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 3994888 .. 3995367 (+)
Sequence length	480

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGTTGGTGTGCTTTGATTGTGGCCGTGGGGGCTTGGTTTAGACAGCCGTATTGTGGAGCGAGGAGAAGCTTGGAAATAGTGGCGGAGACGGTGGAGGAGAGGAAAGAATTTATTATAGGATTATGTGTATCATCGGCAATAGGGATAGTAACAACGTCTGTTCAAATCAAAACCAAGCTTCCAAATTCATTTCAGTGTCTGTCCATGCCTATTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCGAATCAGTTTTCAGAACACTTTCAGAGATTCTGTATTGTGTTGGAGATTTCATGTGCGCTACAACCTGTTTCATTGCCACGGCCATTTCCTATGACGACGCACATTTTCATACCATCGTCATTGTCCTTTACTCAATCTTCTGTATCATCTGCATTATCTTCATCATCTTCATCTCCATCACCCACAACGACCCTTCATCACCTTCCTCCTCCAATATCTAG

mRNA sequence

ATGTTGGGTTGGTGTGCTTTGATTGTGGCCGTGGGGGCTTGGTTTAGACAGCCGTATTGTGGAGCGAGGAGAAGCTTGGAAATAGTGGCGGAGACGGTGGAGGAGAGGAAAGAATTTATTATAGGATTATGTGTATCATCGGCAATAGGGATAGTAACAACGTCTGTTCAAATCAAAACCAAGCTTCCAAATTCATTTCAGTGTCTGTCCATGCCTATTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCGAATCAGTTTTCAGAACACTTTCAGAGATTCTGTATTGTGTTGGAGATTTCATGTGCGCTACAACCTGTTTCATTGCCACGGCCATTTCCTATGACGACGCACATTTTCATACCATCGTCATTGTCCTTTACTCAATCTTCTGTATCATCTGCATTATCTTCATCATCTTCATCTCCATCACCCACAACGACCCTTCATCACCTTCCTCCTCCAATATCTAG

Coding sequence (CDS)

ATGTTGGGTTGGTGTGCTTTGATTGTGGCCGTGGGGGCTTGGTTTAGACAGCCGTATTGTGGAGCGAGGAGAAGCTTGGAAATAGTGGCGGAGACGGTGGAGGAGAGGAAAGAATTTATTATAGGATTATGTGTATCATCGGCAATAGGGATAGTAACAACGTCTGTTCAAATCAAAACCAAGCTTCCAAATTCATTTCAGTGTCTGTCCATGCCTATTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCGAATCAGTTTTCAGAACACTTTCAGAGATTCTGTATTGTGTTGGAGATTTCATGTGCGCTACAACCTGTTTCATTGCCACGGCCATTTCCTATGACGACGCACATTTTCATACCATCGTCATTGTCCTTTACTCAATCTTCTGTATCATCTGCATTATCTTCATCATCTTCATCTCCATCACCCACAACGACCCTTCATCACCTTCCTCCTCCAATATCTAG

Protein sequence

MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVLYSIFCIICIIFIIFISITHNDPSSPSSSNI

Homology

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BLAST of CsGy1G006160.1 vs. NCBI nr
Match: KGN64088.1 (hypothetical protein Csa_1G040510 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 1.7e-64
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60
           MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT
Sbjct: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60

Query: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120
           KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA
Sbjct: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120

Query: 121 HFHTIVIVL 130
           HFHTIVIVL
Sbjct: 121 HFHTIVIVL 129

[Close]

BLAST of CsGy1G006160.1 vs. NCBI nr
Match: KGN59865.1 (hypothetical protein Csa_3G851175 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 4.5e-41
Identity = 95/129 (73.64%), Postives = 105/129 (81.40%), Query Frame = 0


Query: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60
           MLG CAL VAV  WFRQ Y G RRSLE+VAE VEERKE IIG C+SSAIGI T SVQ KT
Sbjct: 1   MLGQCALTVAV--WFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKT 60

Query: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120
           KLPNSFQ LS+ +L+CF+SV FARMI S+F+TLS+ILYC G F+CAT CFIATAI Y D 
Sbjct: 61  KLPNSFQFLSIAVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPY-DT 120

Query: 121 HFHTIVIVL 130
           HFH IVIVL
Sbjct: 121 HFHIIVIVL 126

[Close]

BLAST of CsGy1G006160.1 vs. NCBI nr
Match: KGN64089.1 (hypothetical protein Csa_1G040520 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 5.0e-32
Identity = 78/112 (69.64%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 6   ALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNS 65
           ALIV    WFRQ Y G RRS E+ AE VEE K+ IIG CVSSAIGI T SV IKT+LPNS
Sbjct: 4   ALIVG-AVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNS 63

Query: 66  FQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISY 118
           FQ LS+ +LLCFVSVVFARMI S+F TLS+ILYCVG  + A++CFIATAI Y
Sbjct: 64  FQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 114

[Close]

BLAST of CsGy1G006160.1 vs. NCBI nr
Match: KGN64090.1 (hypothetical protein Csa_1G041520 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 6.3e-19
Identity = 60/108 (55.56%), Postives = 78/108 (72.22%), Query Frame = 0


Query: 24  RSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT--KLPNSFQCLSMPILLCFVSVV 83
           R L +VAE VEE KE I+ LCVSSAIGI T SVQI+T  +LP +FQ LS+ +LLCF  V 
Sbjct: 35  RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVG 94

Query: 84  FARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVL 130
           FA+M + +F+T+S+ILYCVG F+  T  FIATAI +   +F  I+ +L
Sbjct: 95  FAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPF-APYFQIIIFIL 141

[Close]

BLAST of CsGy1G006160.1 vs. NCBI nr
Match: KGN60535.1 (hypothetical protein Csa_2G000430 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 5.4e-10
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 26  LEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSVVFARM 85
           +E+VA+ VEE+K  IIG   +    I   SVQ K KLP+SF+ +S+  LLC +  V A +
Sbjct: 10  VEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLLCFVSAMI 69

Query: 86  IESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVL 130
           I+  F+T +++LY +G F C T+  IA AI     +FH ++I+L
Sbjct: 70  IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIP-SQMYFHVLLILL 112

[Close]

BLAST of CsGy1G006160.1 vs. TrEMBL
Match: tr|A0A0A0LQP5|A0A0A0LQP5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.1e-64
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60
           MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT
Sbjct: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60

Query: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120
           KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA
Sbjct: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120

Query: 121 HFHTIVIVL 130
           HFHTIVIVL
Sbjct: 121 HFHTIVIVL 129

[Close]

BLAST of CsGy1G006160.1 vs. TrEMBL
Match: tr|A0A0A0LCY2|A0A0A0LCY2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.0e-41
Identity = 95/129 (73.64%), Postives = 105/129 (81.40%), Query Frame = 0


Query: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60
           MLG CAL VAV  WFRQ Y G RRSLE+VAE VEERKE IIG C+SSAIGI T SVQ KT
Sbjct: 1   MLGQCALTVAV--WFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKT 60

Query: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120
           KLPNSFQ LS+ +L+CF+SV FARMI S+F+TLS+ILYC G F+CAT CFIATAI Y D 
Sbjct: 61  KLPNSFQFLSIAVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPY-DT 120

Query: 121 HFHTIVIVL 130
           HFH IVIVL
Sbjct: 121 HFHIIVIVL 126

[Close]

BLAST of CsGy1G006160.1 vs. TrEMBL
Match: tr|A0A0A0LSX4|A0A0A0LSX4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.3e-32
Identity = 78/112 (69.64%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 6   ALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNS 65
           ALIV    WFRQ Y G RRS E+ AE VEE K+ IIG CVSSAIGI T SV IKT+LPNS
Sbjct: 4   ALIVG-AVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNS 63

Query: 66  FQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISY 118
           FQ LS+ +LLCFVSVVFARMI S+F TLS+ILYCVG  + A++CFIATAI Y
Sbjct: 64  FQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 114

[Close]

BLAST of CsGy1G006160.1 vs. TrEMBL
Match: tr|A0A0A0LQB6|A0A0A0LQB6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.2e-19
Identity = 60/108 (55.56%), Postives = 78/108 (72.22%), Query Frame = 0


Query: 24  RSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT--KLPNSFQCLSMPILLCFVSVV 83
           R L +VAE VEE KE I+ LCVSSAIGI T SVQI+T  +LP +FQ LS+ +LLCF  V 
Sbjct: 35  RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVG 94

Query: 84  FARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVL 130
           FA+M + +F+T+S+ILYCVG F+  T  FIATAI +   +F  I+ +L
Sbjct: 95  FAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPF-APYFQIIIFIL 141

[Close]

BLAST of CsGy1G006160.1 vs. TrEMBL
Match: tr|A0A0A0LEV1|A0A0A0LEV1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.5e-10
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 26  LEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSVVFARM 85
           +E+VA+ VEE+K  IIG   +    I   SVQ K KLP+SF+ +S+  LLC +  V A +
Sbjct: 10  VEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLLCFVSAMI 69

Query: 86  IESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVL 130
           I+  F+T +++LY +G F C T+  IA AI     +FH ++I+L
Sbjct: 70  IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIP-SQMYFHVLLILL 112

The following BLAST results are available for this feature:

BLAST of CsGy1G006160.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64088.1	1.7e-64	100.00	hypothetical protein Csa_1G040510 [Cucumis sativus]	[more]
KGN59865.1	4.5e-41	73.64	hypothetical protein Csa_3G851175 [Cucumis sativus]	[more]
KGN64089.1	5.0e-32	69.64	hypothetical protein Csa_1G040520 [Cucumis sativus]	[more]
KGN64090.1	6.3e-19	55.56	hypothetical protein Csa_1G041520 [Cucumis sativus]	[more]
KGN60535.1	5.4e-10	41.35	hypothetical protein Csa_2G000430 [Cucumis sativus]	[more]

BLAST of CsGy1G006160.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G006160.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G006160.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LQP5\|A0A0A0LQP5_CUCSA	1.1e-64	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1	[more]
tr\|A0A0A0LCY2\|A0A0A0LCY2_CUCSA	3.0e-41	73.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1	[more]
tr\|A0A0A0LSX4\|A0A0A0LSX4_CUCSA	3.3e-32	69.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1	[more]
tr\|A0A0A0LQB6\|A0A0A0LQB6_CUCSA	4.2e-19	55.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1	[more]
tr\|A0A0A0LEV1\|A0A0A0LEV1_CUCSA	3.5e-10	41.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G006160	CsGy1G006160	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G006160.1.exon.1	CsGy1G006160.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G006160.1.CDS.1	CsGy1G006160.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G006160.1	CsGy1G006160.1-protein	polypeptide