Cp4.1LG18g01220 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG18g01220
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Lipid transfer protein
Location	Cp4.1LG18 : 2782042 .. 2784454 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCGAAAAAAATAGGTGGGGTCATTATTAGGAGGTAGATAAATAACTAAAAGAAATAAATAGGGCCTTGGGAGTTGGGAGGGGGCCCACTCTCACACAGAAAATTAAAAAAAAAAAAAAAAACAAAATAAAAACAAAAAACAAAAAAGAGAAATAAATAAGCAATCAAAGTCCTGCAATGGCGGTAGCTGCTGCCATTAATTCACACTCGCCTTCCTCTTCCCAAACCACTTCCCTTCTTCTCTCTCTCTCTCTCTCTATATATCTCTCTCCTCCTCCTCCTCCTCTTCTCTTCAATTCCACCGCCAACCAACTCAAACCCTAGAAAACGAAACAACCGTCTCGATCTACACCAATGGCGACGCCTTCGATCTGCGCGCTAGCGGCGGTGATAATCGCGATTCACGGCATTGCAGGGGCGGTGGCGCAGGCTCCGGCGCCGGGGCCAGCGGTTGCGACGGACTGCTTCACGACGCTGCTGAATATGTCGGATTGCCTGTCGTACGTGTCGGCGGGGAGCAAGGACGTGAAGCCGGACAAGCATTGCTGCCCGGAGCTGGCGGGGCTGGTGGAGAGTAGCCCTAGCTGCCTCTGTCAGCTGCTTAGCGATCCTAATAAAGTTGGGTTAACCATTGATGTCGACAGAGCTATGAAGCTTCCTTCCGCCTGCAATGTCTCCACCCCTCCCGTTAATCTCTGCTCTCGTAAGCTTTCTTTTCCCTTTCCTTAAATAAAAAATTAAAAAATTAAAAAAATTAAAATTAAAATTAAAATGAATCTTTTTAAAATACCCAATTTAATCTTTTTTTTTCTTCTTTTTAATGGAAATTTTCAATTATGATTCAAATTTATATTCCATGATTTTTCAATTTTTCAATCTGCCCCTAAGTTTTTGGAGATTTGTAGCTATTAAGTCCTTCAAACTTTAAAAATTACAACTTAATTGTAACGACCCAGATACACCGCGGTTAGATATTATCCTCTTTGGACCTCCTCGGCTTTAAAATGCATCTGCTAAGGTTAGGTTTTCACACTCTTTGGACCTCCTCGGCTTTAAAATGCATCTGCTAAGGGAAGGTTTTCACACTCTTACAAAGGGTGGTTTGTCCTCCTCCTCCCAATCATCGTGGGCTTTCCCTTTTGGGCTTCACCTCGAGGCTTTAAAACGCGTCGGCGAGGGGAAGGTTTACCCACCCTAAGATGGCGCATCCCTTAAATTTTAGAAATATTATTTTAGAAATATATAATTAAACATATAATTACACACCTAACAATTTAGTTTATATATTTTTAAATTTATAATAATTTAATCTTGAACAATCGAACAAAAATTAATTTGTACATCGATGAACTTATAAATCATTGCTAATTTTAAAGTACAGAGATCAAATTATTACAAAACTAAAACTAAAATTAGGTACTAAAATTTAAGGACTAAATTGTTATTTTCCGAAAATCGAAGCATTTTTTAATACTAAGTTCAAGTTTAATTGAAAGTTTAAGAACATTTTAAAAATAATCAAACAAACATTTTTTTAACATTAAGATCATGGAAATTGGAAGTTCAAAAACATTCTTAGAACAATCAAACAAACATAAACTAATATATTACCAAAATGACTTTTATGTTTCAAATTTGCAACAAACATGAACTAAGAACATGCTAGTTTCCCTCCATGAACAAAATTCAAATAAATTTTGAGGCTTAGATCAGTCTTAAAAGCATCATAAGAGGGAGGTTCGTAGCTCAAACCTGCTTGTTTTGAATGCAGTTTTGGGATTTCCGGTGGGATCAAATAGTCCCGGATCAGCCCCAGCCCCAGCACCAGGACCAGGTAATAAATCTTCCATACTCTACATTCTAAGTTCATGGTTTGAGTTTATTCTGAACGAAAATTTCGAATGTTAAAACGCACCTAGGTGTTCAACCACTGGACGATGGAGGCTCCGCCACCCCCGGTACCCCGGGAAGCAGCGGGAATAGGGCTTCGAGCATCAACCGCCTTCATCTCGCATTTCCGCTTGGCATAGCCTTAGGATTTCTTTCGACGCTTCTCTAACCGAGATATCTTTGATTGTCTGTTATTGTTTGCCAATTCTTCTGTCTTTCCTTTTCAGTTCATATGTAGTATTGTACTGAGATATTTTCATGATTGTTAGGCAATAAAATGTTAGTTTCTATTGAAATATTTTGTTGAAACTACCTGTTCTTGTGGCTTGTAAAAAGTGCATGTTTCTGTGATGGTGAAGATTGGAAAAACAAGTTTTAGAGGGTAGCAAGAAGACATTACCAGGTAAGTAGAGACGATAGCAACGCCATCGACATTTTGTATGCATATTATCCACTGCTCATGGAACAAATATTGGGGAAATGGATCAACAATCCTCAAAGTTCTCATCTCTAGACAAAATG

mRNA sequence

TGGCGAAAAAAATAGGTGGGGTCATTATTAGGAGGTAGATAAATAACTAAAAGAAATAAATAGGGCCTTGGGAGTTGGGAGGGGGCCCACTCTCACACAGAAAATTAAAAAAAAAAAAAAAAACAAAATAAAAACAAAAAACAAAAAAGAGAAATAAATAAGCAATCAAAGTCCTGCAATGGCGGTAGCTGCTGCCATTAATTCACACTCGCCTTCCTCTTCCCAAACCACTTCCCTTCTTCTCTCTCTCTCTCTCTCTATATATCTCTCTCCTCCTCCTCCTCCTCTTCTCTTCAATTCCACCGCCAACCAACTCAAACCCTAGAAAACGAAACAACCGTCTCGATCTACACCAATGGCGACGCCTTCGATCTGCGCGCTAGCGGCGGTGATAATCGCGATTCACGGCATTGCAGGGGCGGTGGCGCAGGCTCCGGCGCCGGGGCCAGCGGTTGCGACGGACTGCTTCACGACGCTGCTGAATATGTCGGATTGCCTGTCGTACGTGTCGGCGGGGAGCAAGGACGTGAAGCCGGACAAGCATTGCTGCCCGGAGCTGGCGGGGCTGGTGGAGAGTAGCCCTAGCTGCCTCTGTCAGCTGCTTAGCGATCCTAATAAAGTTGGGTTAACCATTGATGTCGACAGAGCTATGAAGCTTCCTTCCGCCTGCAATGTCTCCACCCCTCCCGTTAATCTCTGCTCTCTTTTGGGATTTCCGGTGGGATCAAATAGTCCCGGATCAGCCCCAGCCCCAGCACCAGGACCAGGTGTTCAACCACTGGACGATGGAGGCTCCGCCACCCCCGGTACCCCGGGAAGCAGCGGGAATAGGGCTTCGAGCATCAACCGCCTTCATCTCGCATTTCCGCTTGGCATAGCCTTAGGATTTCTTTCGACGCTTCTCTAACCGAGATATCTTTGATTGTCTGTTATTGTTTGCCAATTCTTCTGTCTTTCCTTTTCAGTTCATATGTAGTATTGTACTGAGATATTTTCATGATTGTTAGGCAATAAAATGTTAGTTTCTATTGAAATATTTTGTTGAAACTACCTGTTCTTGTGGCTTGTAAAAAGTGCATGTTTCTGTGATGGTGAAGATTGGAAAAACAAGTTTTAGAGGGTAGCAAGAAGACATTACCAGGTAAGTAGAGACGATAGCAACGCCATCGACATTTTGTATGCATATTATCCACTGCTCATGGAACAAATATTGGGGAAATGGATCAACAATCCTCAAAGTTCTCATCTCTAGACAAAATG

Coding sequence (CDS)

ATGGCGACGCCTTCGATCTGCGCGCTAGCGGCGGTGATAATCGCGATTCACGGCATTGCAGGGGCGGTGGCGCAGGCTCCGGCGCCGGGGCCAGCGGTTGCGACGGACTGCTTCACGACGCTGCTGAATATGTCGGATTGCCTGTCGTACGTGTCGGCGGGGAGCAAGGACGTGAAGCCGGACAAGCATTGCTGCCCGGAGCTGGCGGGGCTGGTGGAGAGTAGCCCTAGCTGCCTCTGTCAGCTGCTTAGCGATCCTAATAAAGTTGGGTTAACCATTGATGTCGACAGAGCTATGAAGCTTCCTTCCGCCTGCAATGTCTCCACCCCTCCCGTTAATCTCTGCTCTCTTTTGGGATTTCCGGTGGGATCAAATAGTCCCGGATCAGCCCCAGCCCCAGCACCAGGACCAGGTGTTCAACCACTGGACGATGGAGGCTCCGCCACCCCCGGTACCCCGGGAAGCAGCGGGAATAGGGCTTCGAGCATCAACCGCCTTCATCTCGCATTTCCGCTTGGCATAGCCTTAGGATTTCTTTCGACGCTTCTCTAA

Protein sequence

MATPSICALAAVIIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCCPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGFPVGSNSPGSAPAPAPGPGVQPLDDGGSATPGTPGSSGNRASSINRLHLAFPLGIALGFLSTLL

Homology

[Close]

BLAST of Cp4.1LG18g01220 vs. Swiss-Prot
Match: LTPG2_ARATH (Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana GN=LTPG2 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-23
Identity = 71/171 (41.52%), Postives = 99/171 (57.89%), Query Frame = 1


Query: 1   MATPSICALAAVIIAIHG-IAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKD-- 60
           M+   + A+  ++ ++ G ++  +  +P+ GP+ A DC   L+NM+ CLSYV+ G     
Sbjct: 1   MSNVVVIAVVLIVASLTGHVSAQMDMSPSSGPSGAPDCMANLMNMTGCLSYVTVGEGGGA 60

Query: 61  VKPDKHCCPELAGLVESSPSCLCQLLSD--PNKVGLTIDVDRAMKLPSACNVSTPPVNLC 120
            KPDK CCP LAGLVESSP CLC LLS     ++G+ ID  +A+KLP  C V TP  +LC
Sbjct: 61  AKPDKTCCPALAGLVESSPQCLCYLLSGDMAAQLGIKIDKAKALKLPGVCGVITPDPSLC 120

Query: 121 SLLGFPVGS----NSPGSAPAPAPGPGVQPLDDGGSATPGTPGSSGNRASS 163
           SL G PVG+       G++PA APG  +   +  G    G   S G+ A S
Sbjct: 121 SLFGIPVGAPVAMGDEGASPAYAPG-SMSGAESPGGFGSGPSASRGSDAPS 170

[Close]

BLAST of Cp4.1LG18g01220 vs. Swiss-Prot
Match: NLTL2_ARATH (Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-19
Identity = 58/150 (38.67%), Postives = 85/150 (56.67%), Query Frame = 1


Query: 34  ATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCCPELAGLVESSPSCLCQLLSDPNKVGLTI 93
           A DC + +LNM+DCLS+V++GS  VKP+  CC  L  +V + P CLC+   +   +GLT+
Sbjct: 24  AVDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSGSLGLTL 83

Query: 94  DVDRAMKLPSACNVSTPPVNLCSLLGFPVGSNSPGSAP--APAPGPGVQPLDDGGSATPG 153
           D+ +A  LPS C V+ PP   C   G  V  + P +AP  +P  G G   L  G +A   
Sbjct: 84  DLSKAASLPSVCKVAAPPSARC---GLSVSGDPPATAPGLSPTAGAGAPALSSGANA--A 143

Query: 154 TPGSSGNRASSINRLHLAFPLGIALGFLST 182
           TP SS  R+S  + L ++F   I +  +S+
Sbjct: 144 TPVSS-PRSSDASLLSVSFAFVIFMALISS 167

[Close]

BLAST of Cp4.1LG18g01220 vs. Swiss-Prot
Match: XYP11_ARATH (Xylogen-like protein 11 OS=Arabidopsis thaliana GN=XYP11 PE=1 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 2.0e-17
Identity = 64/189 (33.86%), Postives = 97/189 (51.32%), Query Frame = 1


Query: 1   MATPSICALAAVIIAIHGIAGAVAQAPAP----GPAVATDCFTTLLNMSDCLSYVSAGSK 60
           + T ++  L  + +++   +G    AP P    GP+   +C  ++LN+SDC SYV  GS 
Sbjct: 2   LTTNTLAVLLLLFLSL--CSGQSPPAPEPIAADGPSSPVNCLVSMLNVSDCFSYVQVGSN 61

Query: 61  DVKPDKHCCPELAGLVESSPSCLCQLLSD--PNKVGLTIDVDRAMKLPSACNVSTPPVNL 120
           ++KP+  CCPELAG+V+SSP C+C L       + G+ +D  RA +L + C V  P  +L
Sbjct: 62  EIKPEAACCPELAGMVQSSPECVCNLYGGGASPRFGVKLDKQRAEQLSTICGVKAPSPSL 121

Query: 121 CSLLGFPVGSNSPGSAPAPAPGPGVQPLDDGGSATPGTPGSSGNRASSINRLHLAFPLGI 180
           CS+LGFP  S      PA +        +D  S + G+     N A +          G+
Sbjct: 122 CSVLGFPTIS------PAGS--------EDSSSGSEGSDKDKKNGAMTTKY------CGV 168

Query: 181 ALGFLSTLL 184
           AL  L+ LL
Sbjct: 182 ALNSLALLL 168

[Close]

BLAST of Cp4.1LG18g01220 vs. Swiss-Prot
Match: NLTL5_ARATH (Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-15
Identity = 54/158 (34.18%), Postives = 83/158 (52.53%), Query Frame = 1


Query: 6   ICALAAVIIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCC 65
           I  L+   +++ G +   A APAP    + DC T +LNM+DCLS+VS+G    KP+  CC
Sbjct: 16  IVLLSLSSVSVLGASHHHATAPAP----SVDCSTLILNMADCLSFVSSGGTVAKPEGTCC 75

Query: 66  PELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGFPVGSN 125
             L  ++++   CLC+       +G+T+++ +A  LP+AC +  P +  C L      S 
Sbjct: 76  SGLKTVLKADSQCLCEAFKSSASLGVTLNITKASTLPAACKLHAPSIATCGL------SV 135

Query: 126 SPGSAPAPAPGPGVQPLDDGGSATPGTPGSSGNRASSI 164
           +P +AP  APG      +  G   P    SSGN  SS+
Sbjct: 136 APSTAPGLAPGVAAAGPETAGFLAPNP--SSGNDGSSL 161

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BLAST of Cp4.1LG18g01220 vs. TrEMBL
Match: A0A0A0M2I0_CUCSA (Lipid binding protein OS=Cucumis sativus GN=Csa_1G600910 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.3e-55
Identity = 121/182 (66.48%), Postives = 142/182 (78.02%), Query Frame = 1


Query: 4   PSICALAA-VIIAIHGIAGAVAQAPAPGPAVA--TDCFTTLLNMSDCLSYVSAGSKDVKP 63
           P I A+A  VI+AI GI+G   QAPAPGP      DCFTTLL MSDCL YV+ GS D KP
Sbjct: 6   PWILAVAVLVIMAIEGISG---QAPAPGPGAVGEVDCFTTLLGMSDCLPYVTTGSNDTKP 65

Query: 64  DKHCCPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGF 123
           +K CC ELAGLVE+SP CLC+LLSDP+KVG TIDVDRAMKLP+ C+VSTP ++LCSLLG+
Sbjct: 66  NKQCCSELAGLVENSPKCLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLLGY 125

Query: 124 PVGSNSPGSAPAPAPGPGVQPLDDGGSATPGTPGSSGNRASSINRLHLAFPLGIALGFLS 183
           PVGS++     +PAP PGVQP D GGS+T  TPG+SGNRASSI+ L LAFPLG+AL F+ 
Sbjct: 126 PVGSSN-----SPAPSPGVQPPDAGGSSTTDTPGNSGNRASSIDHLRLAFPLGLALAFIP 179

[Close]

BLAST of Cp4.1LG18g01220 vs. TrEMBL
Match: A0A059DAP6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03788 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.5e-32
Identity = 88/170 (51.76%), Postives = 116/170 (68.24%), Query Frame = 1


Query: 9   LAAVIIAIHGIAGAVAQAPA--PGPAVATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCCP 68
           LAAV++A   + GA AQ PA  PGPA A +C + LLN++DCLSYV++GSK   P+K CC 
Sbjct: 11  LAAVLLAT--VCGASAQMPAAAPGPA-ADECLSNLLNLTDCLSYVTSGSKLTAPEKPCCG 70

Query: 69  ELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGFPVGSNS 128
           ELAGL++S P CLC+LLS  +  G++IDV+RA+KLPS CNV+TPP++ C+ +G PVG   
Sbjct: 71  ELAGLLDSHPICLCELLSKASSFGISIDVNRAIKLPSVCNVATPPLSTCAAVGVPVG--V 130

Query: 129 PGSAPAPAPGPGVQPLDDGGSATPGTPGSSGNRASSINRLHLAFPLGIAL 177
           P  AP   PG     L     A+  TPG++GNRAS  N L LA  +G A+
Sbjct: 131 PAGAPVGVPGTAPGSLAPTAGASSPTPGNTGNRASQ-NALLLAAGVGAAI 174

[Close]

BLAST of Cp4.1LG18g01220 vs. TrEMBL
Match: A0A067FT09_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029668mg PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.8e-32
Identity = 90/186 (48.39%), Postives = 112/186 (60.22%), Query Frame = 1


Query: 2   ATPSICALAAVIIAIHGIAGAVAQAPAPGPAVA--------TDCFTTLLNMSDCLSYVSA 61
           A  +  A A  +I +  I  +  QA APGP++A         DC T +LNMSDCLSYV+ 
Sbjct: 9   AATAAAAAAFFLIMVSCIGSSSGQALAPGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTE 68

Query: 62  GSKDVKPDKHCCPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVN 121
           GS    PDK CCPELAGLVES+P CLCQLL   N  G+ ID+ RA+KLPS C V+TPPVN
Sbjct: 69  GSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVN 128

Query: 122 LCSLLGFPVGSNSPGSAPAPAPGPGVQPLDDGGSATPGTPGSSGNRASSINRLHLAFPLG 180
           LCSL G P+   +P  +P PA  PG QP    G A   + G++ N AS      L   +G
Sbjct: 129 LCSLAGVPI--EAPTGSPGPA-SPGTQP--PSGLAASPSNGNNDNAASGNAGSVLCLLVG 188

[Close]

BLAST of Cp4.1LG18g01220 vs. TrEMBL
Match: A0A059AB04_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00621 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.9e-31
Identity = 71/145 (48.97%), Postives = 98/145 (67.59%), Query Frame = 1


Query: 5   SICALAAVIIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKPDKHC 64
           ++   A++++A  G++G   QAPAP PA + DCF  +LNMSDCL+YV  GS    PDK C
Sbjct: 8   ALVVAASLLVASLGVSG---QAPAPAPAPSDDCFNAVLNMSDCLTYVETGSNITVPDKAC 67

Query: 65  CPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGFPVGS 124
           CPELAG+V+SSP CLC+L+      G+ +DV+RA+KLP+AC+V TPP NLC+  G P+ S
Sbjct: 68  CPELAGMVDSSPVCLCELIGKAGSFGIDVDVNRALKLPAACDVVTPPTNLCAAAGVPISS 127

Query: 125 NSPGSAPAPAPGPGVQPLDDGGSAT 150
           + PG+       PG    +DGG A+
Sbjct: 128 DVPGA-------PGNPSFNDGGRAS 142

[Close]

BLAST of Cp4.1LG18g01220 vs. TrEMBL
Match: V4TH15_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016831mg PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.6e-31
Identity = 90/186 (48.39%), Postives = 111/186 (59.68%), Query Frame = 1


Query: 2   ATPSICALAAVIIAIHGIAGAVAQAPAPGPAVA--------TDCFTTLLNMSDCLSYVSA 61
           AT +  A A  +I +  I  +  QA APGP +A         DC   +LNMSDCLSYV+ 
Sbjct: 10  ATAAAAAAAFFLIMVSCIGSSSGQALAPGPYMAFGPSPSPEDDCLMKVLNMSDCLSYVTE 69

Query: 62  GSKDVKPDKHCCPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVN 121
           GS    PDK CCPELAGLVES+P CLCQLL   N  G+ ID+ RA+KLPS C V+TPPVN
Sbjct: 70  GSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVN 129

Query: 122 LCSLLGFPVGSNSPGSAPAPAPGPGVQPLDDGGSATPGTPGSSGNRASSINRLHLAFPLG 180
           LCSL G P+   +P  +P PA  PG QP    G A   + G++ N AS      LA  +G
Sbjct: 130 LCSLAGVPI--EAPTGSPGPA-SPGTQP--PSGLAASPSNGNNDNAASGNAGSVLALLVG 189

[Close]

BLAST of Cp4.1LG18g01220 vs. TAIR10
Match: AT3G43720.1 (AT3G43720.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 111.3 bits (277), Expect = 6.3e-25
Identity = 71/171 (41.52%), Postives = 99/171 (57.89%), Query Frame = 1


Query: 1   MATPSICALAAVIIAIHG-IAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKD-- 60
           M+   + A+  ++ ++ G ++  +  +P+ GP+ A DC   L+NM+ CLSYV+ G     
Sbjct: 1   MSNVVVIAVVLIVASLTGHVSAQMDMSPSSGPSGAPDCMANLMNMTGCLSYVTVGEGGGA 60

Query: 61  VKPDKHCCPELAGLVESSPSCLCQLLSD--PNKVGLTIDVDRAMKLPSACNVSTPPVNLC 120
            KPDK CCP LAGLVESSP CLC LLS     ++G+ ID  +A+KLP  C V TP  +LC
Sbjct: 61  AKPDKTCCPALAGLVESSPQCLCYLLSGDMAAQLGIKIDKAKALKLPGVCGVITPDPSLC 120

Query: 121 SLLGFPVGS----NSPGSAPAPAPGPGVQPLDDGGSATPGTPGSSGNRASS 163
           SL G PVG+       G++PA APG  +   +  G    G   S G+ A S
Sbjct: 121 SLFGIPVGAPVAMGDEGASPAYAPG-SMSGAESPGGFGSGPSASRGSDAPS 170

[Close]

BLAST of Cp4.1LG18g01220 vs. TAIR10
Match: AT2G13820.1 (AT2G13820.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 97.4 bits (241), Expect = 9.4e-21
Identity = 58/150 (38.67%), Postives = 85/150 (56.67%), Query Frame = 1


Query: 34  ATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCCPELAGLVESSPSCLCQLLSDPNKVGLTI 93
           A DC + +LNM+DCLS+V++GS  VKP+  CC  L  +V + P CLC+   +   +GLT+
Sbjct: 24  AVDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSGSLGLTL 83

Query: 94  DVDRAMKLPSACNVSTPPVNLCSLLGFPVGSNSPGSAP--APAPGPGVQPLDDGGSATPG 153
           D+ +A  LPS C V+ PP   C   G  V  + P +AP  +P  G G   L  G +A   
Sbjct: 84  DLSKAASLPSVCKVAAPPSARC---GLSVSGDPPATAPGLSPTAGAGAPALSSGANA--A 143

Query: 154 TPGSSGNRASSINRLHLAFPLGIALGFLST 182
           TP SS  R+S  + L ++F   I +  +S+
Sbjct: 144 TPVSS-PRSSDASLLSVSFAFVIFMALISS 167

[Close]

BLAST of Cp4.1LG18g01220 vs. TAIR10
Match: AT2G27130.1 (AT2G27130.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-18
Identity = 64/189 (33.86%), Postives = 97/189 (51.32%), Query Frame = 1


Query: 1   MATPSICALAAVIIAIHGIAGAVAQAPAP----GPAVATDCFTTLLNMSDCLSYVSAGSK 60
           + T ++  L  + +++   +G    AP P    GP+   +C  ++LN+SDC SYV  GS 
Sbjct: 2   LTTNTLAVLLLLFLSL--CSGQSPPAPEPIAADGPSSPVNCLVSMLNVSDCFSYVQVGSN 61

Query: 61  DVKPDKHCCPELAGLVESSPSCLCQLLSD--PNKVGLTIDVDRAMKLPSACNVSTPPVNL 120
           ++KP+  CCPELAG+V+SSP C+C L       + G+ +D  RA +L + C V  P  +L
Sbjct: 62  EIKPEAACCPELAGMVQSSPECVCNLYGGGASPRFGVKLDKQRAEQLSTICGVKAPSPSL 121

Query: 121 CSLLGFPVGSNSPGSAPAPAPGPGVQPLDDGGSATPGTPGSSGNRASSINRLHLAFPLGI 180
           CS+LGFP  S      PA +        +D  S + G+     N A +          G+
Sbjct: 122 CSVLGFPTIS------PAGS--------EDSSSGSEGSDKDKKNGAMTTKY------CGV 168

Query: 181 ALGFLSTLL 184
           AL  L+ LL
Sbjct: 182 ALNSLALLL 168

[Close]

BLAST of Cp4.1LG18g01220 vs. TAIR10
Match: AT5G64080.1 (AT5G64080.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-16
Identity = 54/158 (34.18%), Postives = 83/158 (52.53%), Query Frame = 1


Query: 6   ICALAAVIIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCC 65
           I  L+   +++ G +   A APAP    + DC T +LNM+DCLS+VS+G    KP+  CC
Sbjct: 16  IVLLSLSSVSVLGASHHHATAPAP----SVDCSTLILNMADCLSFVSSGGTVAKPEGTCC 75

Query: 66  PELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGFPVGSN 125
             L  ++++   CLC+       +G+T+++ +A  LP+AC +  P +  C L      S 
Sbjct: 76  SGLKTVLKADSQCLCEAFKSSASLGVTLNITKASTLPAACKLHAPSIATCGL------SV 135

Query: 126 SPGSAPAPAPGPGVQPLDDGGSATPGTPGSSGNRASSI 164
           +P +AP  APG      +  G   P    SSGN  SS+
Sbjct: 136 APSTAPGLAPGVAAAGPETAGFLAPNP--SSGNDGSSL 161

[Close]

BLAST of Cp4.1LG18g01220 vs. TAIR10
Match: AT4G08670.1 (AT4G08670.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-16
Identity = 52/171 (30.41%), Postives = 89/171 (52.05%), Query Frame = 1


Query: 26  APAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCCPELAGLVESSPSCLCQLLSD 85
           APAPGP+ ++DC T + +M DCL Y+  GS + KP+K CC  +  +++ +P C+C  L  
Sbjct: 38  APAPGPS-SSDCSTVIYSMMDCLGYLGVGSNETKPEKSCCTGIETVLQYNPQCICAGLVS 97

Query: 86  PNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGFPVGSNSPGSAP------APAPGPGV 145
             ++G+ ++  RA+  P AC +S  P + C ++    G+ +PG++P      AP   P  
Sbjct: 98  AGEMGIELNSTRALATPKACKLSIAPPH-CGII--TSGATTPGASPVSPSAGAPTTSPSA 157

Query: 146 ----------QPLDDGGSATPGTPGSSGNRASSINRLHLAFPLGIALGFLS 181
                        D+  S T  +P SSG    S+  L + F +  ++ ++S
Sbjct: 158 AKSPETSATSPSSDETPSMTAPSPSSSGTNILSVPALTIVFVIVSSVAYIS 204

[Close]

BLAST of Cp4.1LG18g01220 vs. NCBI nr
Match: gi|659100398|ref|XP_008451079.1| (PREDICTED: non-specific lipid transfer protein GPI-anchored 2 isoform X2 [Cucumis melo])

HSP 1 Score: 240.7 bits (613), Expect = 2.0e-60
Identity = 127/177 (71.75%), Postives = 141/177 (79.66%), Query Frame = 1


Query: 6   ICALAAVIIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCC 65
           I ALA   +AI GI+G   QAPAPGPA   DCFTTLLNMSDCLSYV+AGS D KP+K CC
Sbjct: 7   ILALAVATMAIEGISG---QAPAPGPAGEVDCFTTLLNMSDCLSYVTAGSNDTKPNKQCC 66

Query: 66  PELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGFPVGSN 125
            ELAGLVESSP CLC+LLSDP+KVGLTIDVDRAMKLPS C +STPP++LCSLLGFPVGS 
Sbjct: 67  SELAGLVESSPKCLCELLSDPDKVGLTIDVDRAMKLPSQCRISTPPISLCSLLGFPVGS- 126

Query: 126 SPGSAPAPAPGPGVQPLDDGGSATPGTPGSSGNRASSINRLHLAFPLGIALGFLSTL 183
                 +PAP PGVQP D GGS+T  TPG+ GNRASSIN L LAFPLG+AL F+  L
Sbjct: 127 ------SPAPSPGVQPPDAGGSSTTDTPGNGGNRASSINHLRLAFPLGLALAFIPAL 173

[Close]

BLAST of Cp4.1LG18g01220 vs. NCBI nr
Match: gi|659100396|ref|XP_008451078.1| (PREDICTED: non-specific lipid transfer protein GPI-anchored 2 isoform X1 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 3.3e-60
Identity = 127/177 (71.75%), Postives = 142/177 (80.23%), Query Frame = 1


Query: 6   ICALAAVIIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCC 65
           I ALA   +AI GI+G   QAPAPGPA   DCFTTLLNMSDCLSYV+AGS D KP+K CC
Sbjct: 7   ILALAVATMAIEGISG---QAPAPGPAGEVDCFTTLLNMSDCLSYVTAGSNDTKPNKQCC 66

Query: 66  PELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGFPVGSN 125
            ELAGLVESSP CLC+LLSDP+KVGLTIDVDRAMKLPS C +STPP++LCSLLGFPVGS+
Sbjct: 67  SELAGLVESSPKCLCELLSDPDKVGLTIDVDRAMKLPSQCRISTPPISLCSLLGFPVGSS 126

Query: 126 SPGSAPAPAPGPGVQPLDDGGSATPGTPGSSGNRASSINRLHLAFPLGIALGFLSTL 183
                PAP+P  GVQP D GGS+T  TPG+ GNRASSIN L LAFPLG+AL F+  L
Sbjct: 127 -----PAPSPDLGVQPPDAGGSSTTDTPGNGGNRASSINHLRLAFPLGLALAFIPAL 175

[Close]

BLAST of Cp4.1LG18g01220 vs. NCBI nr
Match: gi|449452718|ref|XP_004144106.1| (PREDICTED: xylogen-like protein 11 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 3.2e-55
Identity = 121/182 (66.48%), Postives = 142/182 (78.02%), Query Frame = 1


Query: 4   PSICALAA-VIIAIHGIAGAVAQAPAPGPAVA--TDCFTTLLNMSDCLSYVSAGSKDVKP 63
           P I A+A  VI+AI GI+G   QAPAPGP      DCFTTLL MSDCL YV+ GS D KP
Sbjct: 6   PWILAVAVLVIMAIEGISG---QAPAPGPGAVGEVDCFTTLLGMSDCLPYVTTGSNDTKP 65

Query: 64  DKHCCPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGF 123
           +K CC ELAGLVE+SP CLC+LLSDP+KVG TIDVDRAMKLP+ C+VSTP ++LCSLLG+
Sbjct: 66  NKQCCSELAGLVENSPKCLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLLGY 125

Query: 124 PVGSNSPGSAPAPAPGPGVQPLDDGGSATPGTPGSSGNRASSINRLHLAFPLGIALGFLS 183
           PVGS++     +PAP PGVQP D GGS+T  TPG+SGNRASSI+ L LAFPLG+AL F+ 
Sbjct: 126 PVGSSN-----SPAPSPGVQPPDAGGSSTTDTPGNSGNRASSIDHLRLAFPLGLALAFIP 179

[Close]

BLAST of Cp4.1LG18g01220 vs. NCBI nr
Match: gi|568832384|ref|XP_006470415.1| (PREDICTED: non-specific lipid transfer protein GPI-anchored 2-like [Citrus sinensis])

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-32
Identity = 92/186 (49.46%), Postives = 113/186 (60.75%), Query Frame = 1


Query: 2   ATPSICALAAVIIAIHGIAGAVAQAPAPGPAVA--------TDCFTTLLNMSDCLSYVSA 61
           A  +  A A  +I +  I  +  QA APGP++A         DC T +LNMSDCLSYV+ 
Sbjct: 9   AATAAAAAAFFLIMVSCIGSSSGQALAPGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTE 68

Query: 62  GSKDVKPDKHCCPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVN 121
           GS    PDK CCPELAGLVES+P CLCQLL   NK G+ ID+ RA+KLPS C VSTPPVN
Sbjct: 69  GSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNKYGIKIDMTRALKLPSVCGVSTPPVN 128

Query: 122 LCSLLGFPVGSNSPGSAPAPAPGPGVQPLDDGGSATPGTPGSSGNRASSINRLHLAFPLG 180
           LCSL G P+   +P  +P PA  PG QP    G A   + G++ N AS      L   +G
Sbjct: 129 LCSLAGVPI--EAPTGSPGPA-SPGTQP--PSGLAASPSNGNNDNAASGNAGSVLCLLVG 188

[Close]

BLAST of Cp4.1LG18g01220 vs. NCBI nr
Match: gi|702279752|ref|XP_010045144.1| (PREDICTED: non-specific lipid transfer protein GPI-anchored 2 [Eucalyptus grandis])

HSP 1 Score: 146.4 bits (368), Expect = 5.0e-32
Identity = 88/170 (51.76%), Postives = 116/170 (68.24%), Query Frame = 1


Query: 9   LAAVIIAIHGIAGAVAQAPA--PGPAVATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCCP 68
           LAAV++A   + GA AQ PA  PGPA A +C + LLN++DCLSYV++GSK   P+K CC 
Sbjct: 11  LAAVLLAT--VCGASAQMPAAAPGPA-ADECLSNLLNLTDCLSYVTSGSKLTAPEKPCCG 70

Query: 69  ELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGFPVGSNS 128
           ELAGL++S P CLC+LLS  +  G++IDV+RA+KLPS CNV+TPP++ C+ +G PVG   
Sbjct: 71  ELAGLLDSHPICLCELLSKASSFGISIDVNRAIKLPSVCNVATPPLSTCAAVGVPVG--V 130

Query: 129 PGSAPAPAPGPGVQPLDDGGSATPGTPGSSGNRASSINRLHLAFPLGIAL 177
           P  AP   PG     L     A+  TPG++GNRAS  N L LA  +G A+
Sbjct: 131 PAGAPVGVPGTAPGSLAPTAGASSPTPGNTGNRASQ-NALLLAAGVGAAI 174

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g01220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LTPG2_ARATH	1.1e-23	41.52	Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana GN=LT...	[more]
NLTL2_ARATH	1.7e-19	38.67	Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thalia...	[more]
XYP11_ARATH	2.0e-17	33.86	Xylogen-like protein 11 OS=Arabidopsis thaliana GN=XYP11 PE=1 SV=2	[more]
NLTL5_ARATH	2.5e-15	34.18	Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thalia...	[more]

BLAST of Cp4.1LG18g01220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M2I0_CUCSA	2.3e-55	66.48	Lipid binding protein OS=Cucumis sativus GN=Csa_1G600910 PE=4 SV=1	[more]
A0A059DAP6_EUCGR	3.5e-32	51.76	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03788 PE=4 SV=1	[more]
A0A067FT09_CITSI	7.8e-32	48.39	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029668mg PE=4 SV=1	[more]
A0A059AB04_EUCGR	3.9e-31	48.97	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00621 PE=4 SV=1	[more]
V4TH15_9ROSI	6.6e-31	48.39	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016831mg PE=4 SV=1	[more]

BLAST of Cp4.1LG18g01220 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G43720.1	6.3e-25	41.52	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT2G13820.1	9.4e-21	38.67	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT2G27130.1	1.2e-18	33.86	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT5G64080.1	1.4e-16	34.18	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT4G08670.1	1.4e-16	30.41	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]

BLAST of Cp4.1LG18g01220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659100398\|ref\|XP_008451079.1\|	2.0e-60	71.75	PREDICTED: non-specific lipid transfer protein GPI-anchored 2 isoform X2 [Cucumi...	[more]
gi\|659100396\|ref\|XP_008451078.1\|	3.3e-60	71.75	PREDICTED: non-specific lipid transfer protein GPI-anchored 2 isoform X1 [Cucumi...	[more]
gi\|449452718\|ref\|XP_004144106.1\|	3.2e-55	66.48	PREDICTED: xylogen-like protein 11 [Cucumis sativus]	[more]
gi\|568832384\|ref\|XP_006470415.1\|	1.7e-32	49.46	PREDICTED: non-specific lipid transfer protein GPI-anchored 2-like [Citrus sinen...	[more]
gi\|702279752\|ref\|XP_010045144.1\|	5.0e-32	51.76	PREDICTED: non-specific lipid transfer protein GPI-anchored 2 [Eucalyptus grandi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g01220.1	Cp4.1LG18g01220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 22..115 score: 2.0
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 37..115 score: 2.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 34..116 score: 1.83
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 35..113 score: 8.7
None	No IPR available	PANTHER	PTHR33044	FAMILY NOT NAMED	coord: 1..182 score: 4.7
None	No IPR available	PANTHER	PTHR33044:SF24	NON-SPECIFIC LIPID TRANSFER PROTEIN GPI-ANCHORED 2-RELATED	coord: 1..182 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG18g01220	Cucsa.142650	Cucumber (Gy14) v1	cgycpeB0382
Cp4.1LG18g01220	CmaCh10G009830	Cucurbita maxima (Rimu)	cmacpeB080
Cp4.1LG18g01220	CmoCh10G010370	Cucurbita moschata (Rifu)	cmocpeB055
Cp4.1LG18g01220	Cla011078	Watermelon (97103) v1	cpewmB355
Cp4.1LG18g01220	Csa1G600910	Cucumber (Chinese Long) v2	cpecuB349
Cp4.1LG18g01220	MELO3C015618	Melon (DHL92) v3.5.1	cpemeB329
Cp4.1LG18g01220	ClCG03G014210	Watermelon (Charleston Gray)	cpewcgB327
Cp4.1LG18g01220	CSPI01G29600	Wild cucumber (PI 183967)	cpecpiB350
Cp4.1LG18g01220	Lsi06G004320	Bottle gourd (USVL1VR-Ls)	cpelsiB299
Cp4.1LG18g01220	MELO3C015618.2	Melon (DHL92) v3.6.1	cpemedB387
Cp4.1LG18g01220	CsaV3_1G042030	Cucumber (Chinese Long) v3	cpecucB0428
Cp4.1LG18g01220	Bhi02G001394	Wax gourd	cpewgoB0460
Cp4.1LG18g01220	CsGy1G028910	Cucumber (Gy14) v2	cgybcpeB039
Cp4.1LG18g01220	Carg06148	Silver-seed gourd	carcpeB0033

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG18g01220	Silver-seed gourd	carcpeB0247
Cp4.1LG18g01220	Silver-seed gourd	carcpeB0735
Cp4.1LG18g01220	Cucurbita pepo (Zucchini)	cpecpeB363
Cp4.1LG18g01220	Cucurbita pepo (Zucchini)	cpecpeB369
Cp4.1LG18g01220	Cucurbita maxima (Rimu)	cmacpeB126
Cp4.1LG18g01220	Cucurbita maxima (Rimu)	cmacpeB567
Cp4.1LG18g01220	Cucurbita maxima (Rimu)	cmacpeB632
Cp4.1LG18g01220	Cucurbita moschata (Rifu)	cmocpeB104