Cucsa.142650 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.142650
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Lipid binding protein
Location	scaffold01079 : 867947 .. 870354 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCTTCAATGGCGGTAGCCGGTAGCTGCTCCCATTAATTTCCCTCACCTTCCCATCTCTATTTCATCACTTCAATTCCACCGCCCCTCCTTCAAAACCAACTAAAATTAAACCAAAACACCTTCACATCGCGAGCAATGGCGGCGGGAGGACCCTGGATCTTGGCTGTGGCAGTACTAGTGATTATGGCGATTGAGGGGATTTCAGGGCAGGCGCCGGCGCCGGGACCGGGGGCGGTGGGAGAAGTGGATTGCTTTACGACGCTGCTGGGCATGTCGGATTGTTTACCGTACGTGACGACGGGGAGTAATGATACGAAGCCGAATAAGCAATGTTGCTCGGAATTGGCAGGGCTGGTGGAGAATAGCCCTAAATGCCTTTGTGAGCTGCTTAGTGATCCAGATAAAGTTGGATTCACCATTGATGTTGATAGAGCTATGAAGCTTCCTACTCAATGCCATGTCTCCACTCCTTCCATTTCTCTATGCTCTCGTAAGCTTTCTTTCTTTTTTCATCTTTCCTCTTCAATTTCTTTCCTTTATGATATCAAATATACCAAACTCAGCTAATTAATTTATAAACATAGGGAAGGCTTCTTTAATGATAGATTATAAATATTAATACATACTCTCTCTATCAGATCTATTACAAAATCAAAATTGATACTAAAATTCTCCAATAAATCAATTGATTTTTTTTTTTTTGTTATTTTCAAATATAGTGGTTTATTTTGGTACACTATTATAATATTTTATTATATTCATAAATATTTTACCCTTAGAGTTTTTATTTTTAAAATAATTTATTTAAAAATTTTCACATTTATCATATACAAAATTAGGAGTTTGAATGATTAAATATTTTCGTCCTAATTTTGTTATTTGCAATCTCTAGAAAAGCAAAGCAAATTTTGAAATAAAAAAAGGTTTTCACACACTTTTATATCTTTTCTCTAAAATATTAAACTAAGAATTTAATATTTCTTGAAAAACGTGAAAATGTAGTATGAAATTGATAAGAAAACAAAGTATAAATTACAAAAAAATCTAATTTAAGAAAAGAAAATTTTGCTTAAACGAATCTTAGAAATCAAGGACTTGGTAAAGAATCCGAATTATGTGATAATCTCGATTTTGTTTCTTAAAACTGTTATCTGATTATGTGATCCGATCCAAATAGTATAATTCTGAAAATAATTTTTTATGTTTTTATTGTATCCAAAATTTGAATTTTACATTTTAAAGAGCATAATTACATACGTATAAAAAAATTCAATTCATATTTTTAAATATAATATAGATCCTATAATGTATTATAAATCCTATCATAGTGCAAAATAATAATCATTTTAGATTAAGTTATAAATTTGGTCGTGTGATTTTAAAATAGTAGAGTTTAGTCTATAGTTTATAACTAAAATTTAATCCTTTTGTTTAATAAAATCTTCTTATCAAACTATGAGATTTTTTAGTAGAATGTTTCAAACAAACATTATTACATAAACTAATATATTAACTTTGCTATCAAGATGCCCTTTTCCCCCCTAGAAAATTCAAATAGATATCACAAGCATCTTTAATAAATATCATCATAACAGGAGGCTACTTAGCACTAAGTTTGAACGTTAAATTGAAACCAAACCAATGACTTTATAACAAAATCTTGTAAATCAGAACTGGTATGATCAACTAATCTCAATGGTTTGGTTGTAGTCTCACTCCAACTTCAACTCCACCAACAACACCATTTGATATAAAGTTTAATTTAGTTTGTTCTTTGCCAAGTTCAAATTCAAACCGATAAGTGGTTTCAATTGGTTTGAGCGCCTTTCAAATTATCGGTTCTTCCTTGCACCCCTAACCAGCTCAAATCTGTGTTCTTCTAAATGCAGTTTTGGGATATCCAGTGGGATCATCGAATAGTCCAGCACCATCACCAGGTAATAAATCATACACTTTTTTTGTTTTGTGGAAATAATGAAACGCTATACTTTCACAATTTGAGACTATGCTAAACTAAAATTTCATTGTTAAATGTTAAAACATACCTAGGTGTTCAACCACCGGATGCAGGAGGCTCTAGCACCACCGACACCCCAGGAAACAGCGGGAATAGGGCTTCGAGCATCGACCACCTTCGTCTTGCATTTCCACTTGGCTTGGCCTTAGCATTCATTCCTGCACTTTTCTAACCTTTGATTATCTATAAAATTGTTTGCCTATTCTTCTGTCTTTCCTTTTCAGTTTAGAAGTCATTGTATTTGTATTTTATTGTATTGTACTGTACTGAGATATTTTCATGATTGTTAGGCCAATAAAATGTTAGCTTCTATTGAACTATTTTGTTGAAAGTGAAACCACCTGCCCTACAACTTCTAAGGGAAATGTTTGTTTCTGTTGTGGTAAAGA

mRNA sequence

GTCCTTCAATGGCGGTAGCCGGTAGCTGCTCCCATTAATTTCCCTCACCTTCCCATCTCTATTTCATCACTTCAATTCCACCGCCCCTCCTTCAAAACCAACTAAAATTAAACCAAAACACCTTCACATCGCGAGCAATGGCGGCGGGAGGACCCTGGATCTTGGCTGTGGCAGTACTAGTGATTATGGCGATTGAGGGGATTTCAGGGCAGGCGCCGGCGCCGGGACCGGGGGCGGTGGGAGAAGTGGATTGCTTTACGACGCTGCTGGGCATGTCGGATTGTTTACCGTACGTGACGACGGGGAGTAATGATACGAAGCCGAATAAGCAATGTTGCTCGGAATTGGCAGGGCTGGTGGAGAATAGCCCTAAATGCCTTTGTGAGCTGCTTAGTGATCCAGATAAAGTTGGATTCACCATTGATGTTGATAGAGCTATGAAGCTTCCTACTCAATGCCATGTCTCCACTCCTTCCATTTCTCTATGCTCTCTTTTGGGATATCCAGTGGGATCATCGAATAGTCCAGCACCATCACCAGGTGTTCAACCACCGGATGCAGGAGGCTCTAGCACCACCGACACCCCAGGAAACAGCGGGAATAGGGCTTCGAGCATCGACCACCTTCGTCTTGCATTTCCACTTGGCTTGGCCTTAGCATTCATTCCTGCACTTTTCTAACCTTTGATTATCTATAAAATTGTTTGCCTATTCTTCTGTCTTTCCTTTTCAGTTTAGAAGTCattgtatttgtattttattgtattgtactgtactgAGATATTTTCATGATTGTTAGGCCAATAAAATGTTAGCTTCTATTGAACTATTTTGTTGAAAGTGAAACCACCTGCCCTACAACTTCTAAGGGAAATGTTTGTTTCTGTTGTGGTAAAGA

Coding sequence (CDS)

ATGGCGGCGGGAGGACCCTGGATCTTGGCTGTGGCAGTACTAGTGATTATGGCGATTGAGGGGATTTCAGGGCAGGCGCCGGCGCCGGGACCGGGGGCGGTGGGAGAAGTGGATTGCTTTACGACGCTGCTGGGCATGTCGGATTGTTTACCGTACGTGACGACGGGGAGTAATGATACGAAGCCGAATAAGCAATGTTGCTCGGAATTGGCAGGGCTGGTGGAGAATAGCCCTAAATGCCTTTGTGAGCTGCTTAGTGATCCAGATAAAGTTGGATTCACCATTGATGTTGATAGAGCTATGAAGCTTCCTACTCAATGCCATGTCTCCACTCCTTCCATTTCTCTATGCTCTCTTTTGGGATATCCAGTGGGATCATCGAATAGTCCAGCACCATCACCAGGTGTTCAACCACCGGATGCAGGAGGCTCTAGCACCACCGACACCCCAGGAAACAGCGGGAATAGGGCTTCGAGCATCGACCACCTTCGTCTTGCATTTCCACTTGGCTTGGCCTTAGCATTCATTCCTGCACTTTTCTAA

Protein sequence

MAAGGPWILAVAVLVIMAIEGISGQAPAPGPGAVGEVDCFTTLLGMSDCLPYVTTGSNDTKPNKQCCSELAGLVENSPKCLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLLGYPVGSSNSPAPSPGVQPPDAGGSSTTDTPGNSGNRASSIDHLRLAFPLGLALAFIPALF*

Homology

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BLAST of Cucsa.142650 vs. Swiss-Prot
Match: LTPG2_ARATH (Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana GN=LTPG2 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-23
Identity = 66/159 (41.51%), Postives = 87/159 (54.72%), Query Frame = 1


Query: 11  VAVLVIMAIEGISGQAPA-----PGPGAVGEVDCFTTLLGMSDCLPYVTTGSND--TKPN 70
           V + V++ +  ++G   A     P  G  G  DC   L+ M+ CL YVT G      KP+
Sbjct: 5   VVIAVVLIVASLTGHVSAQMDMSPSSGPSGAPDCMANLMNMTGCLSYVTVGEGGGAAKPD 64

Query: 71  KQCCSELAGLVENSPKCLCELLSD--PDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLLG 130
           K CC  LAGLVE+SP+CLC LLS     ++G  ID  +A+KLP  C V TP  SLCSL G
Sbjct: 65  KTCCPALAGLVESSPQCLCYLLSGDMAAQLGIKIDKAKALKLPGVCGVITPDPSLCSLFG 124

Query: 131 YPVGSSNSPAPSPGVQPPDAGGS-STTDTPGNSGNRASS 160
            PVG+  +     G  P  A GS S  ++PG  G+  S+
Sbjct: 125 IPVGAPVAMG-DEGASPAYAPGSMSGAESPGGFGSGPSA 162

[Close]

BLAST of Cucsa.142650 vs. Swiss-Prot
Match: XYP11_ARATH (Xylogen-like protein 11 OS=Arabidopsis thaliana GN=XYP11 PE=1 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 9.4e-23
Identity = 61/148 (41.22%), Postives = 85/148 (57.43%), Query Frame = 1


Query: 11  VAVLVIMAIEGISGQAP-APGP----GAVGEVDCFTTLLGMSDCLPYVTTGSNDTKPNKQ 70
           +AVL+++ +   SGQ+P AP P    G    V+C  ++L +SDC  YV  GSN+ KP   
Sbjct: 7   LAVLLLLFLSLCSGQSPPAPEPIAADGPSSPVNCLVSMLNVSDCFSYVQVGSNEIKPEAA 66

Query: 71  CCSELAGLVENSPKCLCELLSD--PDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLLGY- 130
           CC ELAG+V++SP+C+C L       + G  +D  RA +L T C V  PS SLCS+LG+ 
Sbjct: 67  CCPELAGMVQSSPECVCNLYGGGASPRFGVKLDKQRAEQLSTICGVKAPSPSLCSVLGFP 126

Query: 131 ---PVGSSNSPAPSPGVQPPDAGGSSTT 148
              P GS +S + S G       G+ TT
Sbjct: 127 TISPAGSEDSSSGSEGSDKDKKNGAMTT 154

[Close]

BLAST of Cucsa.142650 vs. Swiss-Prot
Match: NLTL2_ARATH (Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.7e-19
Identity = 52/156 (33.33%), Postives = 79/156 (50.64%), Query Frame = 1


Query: 30  GPGAVGEVDCFTTLLGMSDCLPYVTTGSNDTKPNKQCCSELAGLVENSPKCLCELLSDPD 89
           G  A   VDC + +L M+DCL +VT+GS   KP   CCS L  +V   P+CLCE   +  
Sbjct: 18  GERAHAAVDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSG 77

Query: 90  KVGFTIDVDRAMKLPTQCHVSTPSISLCSLLGYPVGSSNSPAPSPGVQPPDAGGSSTTDT 149
            +G T+D+ +A  LP+ C V+ P  + C L      S + PA +PG+ P    G+    +
Sbjct: 78  SLGLTLDLSKAASLPSVCKVAAPPSARCGL----SVSGDPPATAPGLSPTAGAGAPALSS 137

Query: 150 PGN-----SGNRASSIDHLRLAFPLGLALAFIPALF 181
             N     S  R+S    L ++F   + +A I + +
Sbjct: 138 GANAATPVSSPRSSDASLLSVSFAFVIFMALISSFY 169

[Close]

BLAST of Cucsa.142650 vs. Swiss-Prot
Match: NLTL5_ARATH (Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.5e-17
Identity = 49/151 (32.45%), Postives = 77/151 (50.99%), Query Frame = 1


Query: 8   ILAVAVLVIMAIEGISGQAPAPGPGAVGEVDCFTTLLGMSDCLPYVTTGSNDTKPNKQCC 67
           +L+++ + ++        APAP       VDC T +L M+DCL +V++G    KP   CC
Sbjct: 18  LLSLSSVSVLGASHHHATAPAPS------VDCSTLILNMADCLSFVSSGGTVAKPEGTCC 77

Query: 68  SELAGLVENSPKCLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLLGYPVGSS 127
           S L  +++   +CLCE       +G T+++ +A  LP  C +  PSI+ C   G  V  S
Sbjct: 78  SGLKTVLKADSQCLCEAFKSSASLGVTLNITKASTLPAACKLHAPSIATC---GLSVAPS 137

Query: 128 NSPAPSPGVQ---PPDAGGSSTTDTPGNSGN 156
            +P  +PGV    P  AG  +   + GN G+
Sbjct: 138 TAPGLAPGVAAAGPETAGFLAPNPSSGNDGS 159

[Close]

BLAST of Cucsa.142650 vs. Swiss-Prot
Match: NLTL1_ORYSJ (Non-specific lipid transfer protein-like 1 OS=Oryza sativa subsp. japonica GN=LTPL1 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-13
Identity = 47/146 (32.19%), Postives = 71/146 (48.63%), Query Frame = 1


Query: 2   AAGGPWILAVAVLVIMAIEGISGQAPAPGPGAVGEVDCFTTLLGMSDCLPYVTTGSN-DT 61
           AA    +L V +  +  ++G +  +PAP P     VDC    L ++DCL YVT G    +
Sbjct: 7   AAAVACLLVVGLAAVAGVDGATASSPAPAPA----VDCTAEALKLADCLDYVTPGKTAPS 66

Query: 62  KPNKQCCSELAGLVENSPK--CLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCS 121
           +P+K CC E+ G +++S    CLC   +    +   I++ RA+ LP  C     + S C 
Sbjct: 67  RPSKLCCGEVKGALKDSAAVGCLCAAFTS-KTLPLPINITRALHLPAACGADASAFSKCL 126

Query: 122 LLGYPVGSSNSPAPSPGVQPPDAGGS 145
                     +PAPSP V P  + GS
Sbjct: 127 ----------APAPSPSVAPGTSSGS 137

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BLAST of Cucsa.142650 vs. TrEMBL
Match: A0A0A0M2I0_CUCSA (Lipid binding protein OS=Cucumis sativus GN=Csa_1G600910 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 1.1e-99
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1


Query: 1   MAAGGPWILAVAVLVIMAIEGISGQAPAPGPGAVGEVDCFTTLLGMSDCLPYVTTGSNDT 60
           MAAGGPWILAVAVLVIMAIEGISGQAPAPGPGAVGEVDCFTTLLGMSDCLPYVTTGSNDT
Sbjct: 1   MAAGGPWILAVAVLVIMAIEGISGQAPAPGPGAVGEVDCFTTLLGMSDCLPYVTTGSNDT 60

Query: 61  KPNKQCCSELAGLVENSPKCLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLL 120
           KPNKQCCSELAGLVENSPKCLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLL
Sbjct: 61  KPNKQCCSELAGLVENSPKCLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLL 120

Query: 121 GYPVGSSNSPAPSPGVQPPDAGGSSTTDTPGNSGNRASSIDHLRLAFPLGLALAFIPALF 180
           GYPVGSSNSPAPSPGVQPPDAGGSSTTDTPGNSGNRASSIDHLRLAFPLGLALAFIPALF
Sbjct: 121 GYPVGSSNSPAPSPGVQPPDAGGSSTTDTPGNSGNRASSIDHLRLAFPLGLALAFIPALF 180

[Close]

BLAST of Cucsa.142650 vs. TrEMBL
Match: A0A067FT09_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029668mg PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.3e-33
Identity = 85/175 (48.57%), Postives = 110/175 (62.86%), Query Frame = 1


Query: 10  AVAVLVIMAIEGISGQAPAPGPG-AVG-----EVDCFTTLLGMSDCLPYVTTGSNDTKPN 69
           A  ++++  I   SGQA APGP  A G     E DC T +L MSDCL YVT GSN T P+
Sbjct: 17  AFFLIMVSCIGSSSGQALAPGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPD 76

Query: 70  KQCCSELAGLVENSPKCLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLLGYP 129
           K CC ELAGLVE++P CLC+LL   +  G  ID+ RA+KLP+ C V+TP ++LCSL G P
Sbjct: 77  KPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVP 136

Query: 130 V-GSSNSPAP-SPGVQPPDAGGSSTTDTPGNSGNRASSIDHLRLAFPLGLALAFI 177
           +   + SP P SPG QPP   G + + + GN+ N AS      L   +GLA+AF+
Sbjct: 137 IEAPTGSPGPASPGTQPP--SGLAASPSNGNNDNAASGNAGSVLCLLVGLAVAFL 189

[Close]

BLAST of Cucsa.142650 vs. TrEMBL
Match: B9S6L0_RICCO (Lipid binding protein, putative OS=Ricinus communis GN=RCOM_1109430 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.5e-32
Identity = 81/164 (49.39%), Postives = 105/164 (64.02%), Query Frame = 1


Query: 28  APGPGAVGEVDCFTTLLGMSDCLPYVTTGSNDTKPNKQCCSELAGLVENSPKCLCELLSD 87
           APGP      DC T LL MSDCL YVT  SN T P+K CC ELAGL++ +P CLC+LL +
Sbjct: 53  APGPATN---DCLTPLLNMSDCLSYVTESSNVTVPDKNCCPELAGLLDGNPICLCQLLGN 112

Query: 88  ---PDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLLGYPV----GSSNSPAP----SPGV 147
               +  GF IDV+RA+KLP+ C VSTP +SLCS+ GYPV     S  SP+P    +PGV
Sbjct: 113 SNLTESYGFKIDVNRALKLPSICRVSTPPVSLCSVAGYPVPGPIASEASPSPMDNQTPGV 172

Query: 148 QPPDAGGSSTTDTPGNSGNRASSIDHLRLAFPLGLALAFIPALF 181
            PP+  G +++ + GN+GN AS +     AF +GLA +F+   F
Sbjct: 173 APPE--GLASSPSTGNNGNGASGVAGSAQAFFVGLAFSFLLTFF 211

[Close]

BLAST of Cucsa.142650 vs. TrEMBL
Match: A0A059DAP6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03788 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.9e-32
Identity = 79/168 (47.02%), Postives = 108/168 (64.29%), Query Frame = 1


Query: 11  VAVLVIMAIEGISGQAPAPGPGAVGEVDCFTTLLGMSDCLPYVTTGSNDTKPNKQCCSEL 70
           +A +++  + G S Q PA  PG   + +C + LL ++DCL YVT+GS  T P K CC EL
Sbjct: 11  LAAVLLATVCGASAQMPAAAPGPAAD-ECLSNLLNLTDCLSYVTSGSKLTAPEKPCCGEL 70

Query: 71  AGLVENSPKCLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLLGYPVG-SSNS 130
           AGL+++ P CLCELLS     G +IDV+RA+KLP+ C+V+TP +S C+ +G PVG  + +
Sbjct: 71  AGLLDSHPICLCELLSKASSFGISIDVNRAIKLPSVCNVATPPLSTCAAVGVPVGVPAGA 130

Query: 131 PAPSPGVQP----PDAGGSSTTDTPGNSGNRASSIDHLRLAFPLGLAL 174
           P   PG  P    P AG SS   TPGN+GNRAS  + L LA  +G A+
Sbjct: 131 PVGVPGTAPGSLAPTAGASS--PTPGNTGNRASQ-NALLLAAGVGAAI 174

[Close]

BLAST of Cucsa.142650 vs. TrEMBL
Match: V4TH15_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016831mg PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.7e-31
Identity = 84/173 (48.55%), Postives = 108/173 (62.43%), Query Frame = 1


Query: 10  AVAVLVIMAIEGISGQAPAPGPG-AVG-----EVDCFTTLLGMSDCLPYVTTGSNDTKPN 69
           A  ++++  I   SGQA APGP  A G     E DC   +L MSDCL YVT GSN T P+
Sbjct: 18  AFFLIMVSCIGSSSGQALAPGPYMAFGPSPSPEDDCLMKVLNMSDCLSYVTEGSNVTVPD 77

Query: 70  KQCCSELAGLVENSPKCLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLLGYP 129
           K CC ELAGLVE++P CLC+LL   +  G  ID+ RA+KLP+ C V+TP ++LCSL G P
Sbjct: 78  KPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVP 137

Query: 130 V-GSSNSPAP-SPGVQPPDAGGSSTTDTPGNSGNRASSIDHLRLAFPLGLALA 175
           +   + SP P SPG QPP   G + + + GN+ N AS      LA  +GLA+A
Sbjct: 138 IEAPTGSPGPASPGTQPP--SGLAASPSNGNNDNAASGNAGSVLALLVGLAVA 188

[Close]

BLAST of Cucsa.142650 vs. TAIR10
Match: AT3G43720.1 (AT3G43720.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-24
Identity = 66/159 (41.51%), Postives = 87/159 (54.72%), Query Frame = 1


Query: 11  VAVLVIMAIEGISGQAPA-----PGPGAVGEVDCFTTLLGMSDCLPYVTTGSND--TKPN 70
           V + V++ +  ++G   A     P  G  G  DC   L+ M+ CL YVT G      KP+
Sbjct: 5   VVIAVVLIVASLTGHVSAQMDMSPSSGPSGAPDCMANLMNMTGCLSYVTVGEGGGAAKPD 64

Query: 71  KQCCSELAGLVENSPKCLCELLSD--PDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLLG 130
           K CC  LAGLVE+SP+CLC LLS     ++G  ID  +A+KLP  C V TP  SLCSL G
Sbjct: 65  KTCCPALAGLVESSPQCLCYLLSGDMAAQLGIKIDKAKALKLPGVCGVITPDPSLCSLFG 124

Query: 131 YPVGSSNSPAPSPGVQPPDAGGS-STTDTPGNSGNRASS 160
            PVG+  +     G  P  A GS S  ++PG  G+  S+
Sbjct: 125 IPVGAPVAMG-DEGASPAYAPGSMSGAESPGGFGSGPSA 162

[Close]

BLAST of Cucsa.142650 vs. TAIR10
Match: AT2G27130.1 (AT2G27130.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 108.2 bits (269), Expect = 5.3e-24
Identity = 61/148 (41.22%), Postives = 85/148 (57.43%), Query Frame = 1


Query: 11  VAVLVIMAIEGISGQAP-APGP----GAVGEVDCFTTLLGMSDCLPYVTTGSNDTKPNKQ 70
           +AVL+++ +   SGQ+P AP P    G    V+C  ++L +SDC  YV  GSN+ KP   
Sbjct: 7   LAVLLLLFLSLCSGQSPPAPEPIAADGPSSPVNCLVSMLNVSDCFSYVQVGSNEIKPEAA 66

Query: 71  CCSELAGLVENSPKCLCELLSD--PDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLLGY- 130
           CC ELAG+V++SP+C+C L       + G  +D  RA +L T C V  PS SLCS+LG+ 
Sbjct: 67  CCPELAGMVQSSPECVCNLYGGGASPRFGVKLDKQRAEQLSTICGVKAPSPSLCSVLGFP 126

Query: 131 ---PVGSSNSPAPSPGVQPPDAGGSSTT 148
              P GS +S + S G       G+ TT
Sbjct: 127 TISPAGSEDSSSGSEGSDKDKKNGAMTT 154

[Close]

BLAST of Cucsa.142650 vs. TAIR10
Match: AT2G13820.1 (AT2G13820.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-20
Identity = 52/156 (33.33%), Postives = 79/156 (50.64%), Query Frame = 1


Query: 30  GPGAVGEVDCFTTLLGMSDCLPYVTTGSNDTKPNKQCCSELAGLVENSPKCLCELLSDPD 89
           G  A   VDC + +L M+DCL +VT+GS   KP   CCS L  +V   P+CLCE   +  
Sbjct: 18  GERAHAAVDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSG 77

Query: 90  KVGFTIDVDRAMKLPTQCHVSTPSISLCSLLGYPVGSSNSPAPSPGVQPPDAGGSSTTDT 149
            +G T+D+ +A  LP+ C V+ P  + C L      S + PA +PG+ P    G+    +
Sbjct: 78  SLGLTLDLSKAASLPSVCKVAAPPSARCGL----SVSGDPPATAPGLSPTAGAGAPALSS 137

Query: 150 PGN-----SGNRASSIDHLRLAFPLGLALAFIPALF 181
             N     S  R+S    L ++F   + +A I + +
Sbjct: 138 GANAATPVSSPRSSDASLLSVSFAFVIFMALISSFY 169

[Close]

BLAST of Cucsa.142650 vs. TAIR10
Match: AT3G22600.1 (AT3G22600.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-19
Identity = 54/143 (37.76%), Postives = 82/143 (57.34%), Query Frame = 1


Query: 39  CFTTLLGMSDCLPYVTTGSNDTKPNKQCCSELAGLVENSPKCLCELLS-DPDKVGFTIDV 98
           C   L+ MS CL Y+T   N T PN+QCC++L+ +V++SP CLC++L+    ++G  ++ 
Sbjct: 28  CTNALISMSPCLNYIT--GNSTSPNQQCCNQLSRVVQSSPDCLCQVLNGGGSQLGINVNQ 87

Query: 99  DRAMKLPTQCHVSTPSISLCSLLGYPVGS-SNSPAPSPGVQPPDAGGSSTTDTPGNSGNR 158
            +A+ LP  C+V TP +S C+  G   GS S+SPA SP    P   GS T       G  
Sbjct: 88  TQALGLPRACNVQTPPVSRCNTGGGGGGSTSDSPAESPNSSGP-GNGSKTVPVGEGDGPP 147

Query: 159 ASSIDHLRLAFPLGLALAFIPAL 180
           +S    ++ +FPL   +AF  A+
Sbjct: 148 SSDGSSIKFSFPL---IAFFSAV 164

[Close]

BLAST of Cucsa.142650 vs. TAIR10
Match: AT5G64080.1 (AT5G64080.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 89.4 bits (220), Expect = 2.5e-18
Identity = 49/151 (32.45%), Postives = 77/151 (50.99%), Query Frame = 1


Query: 8   ILAVAVLVIMAIEGISGQAPAPGPGAVGEVDCFTTLLGMSDCLPYVTTGSNDTKPNKQCC 67
           +L+++ + ++        APAP       VDC T +L M+DCL +V++G    KP   CC
Sbjct: 18  LLSLSSVSVLGASHHHATAPAPS------VDCSTLILNMADCLSFVSSGGTVAKPEGTCC 77

Query: 68  SELAGLVENSPKCLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLLGYPVGSS 127
           S L  +++   +CLCE       +G T+++ +A  LP  C +  PSI+ C   G  V  S
Sbjct: 78  SGLKTVLKADSQCLCEAFKSSASLGVTLNITKASTLPAACKLHAPSIATC---GLSVAPS 137

Query: 128 NSPAPSPGVQ---PPDAGGSSTTDTPGNSGN 156
            +P  +PGV    P  AG  +   + GN G+
Sbjct: 138 TAPGLAPGVAAAGPETAGFLAPNPSSGNDGS 159

[Close]

BLAST of Cucsa.142650 vs. NCBI nr
Match: gi|449452718|ref|XP_004144106.1| (PREDICTED: xylogen-like protein 11 [Cucumis sativus])

HSP 1 Score: 370.5 bits (950), Expect = 1.6e-99
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1


Query: 1   MAAGGPWILAVAVLVIMAIEGISGQAPAPGPGAVGEVDCFTTLLGMSDCLPYVTTGSNDT 60
           MAAGGPWILAVAVLVIMAIEGISGQAPAPGPGAVGEVDCFTTLLGMSDCLPYVTTGSNDT
Sbjct: 1   MAAGGPWILAVAVLVIMAIEGISGQAPAPGPGAVGEVDCFTTLLGMSDCLPYVTTGSNDT 60

Query: 61  KPNKQCCSELAGLVENSPKCLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLL 120
           KPNKQCCSELAGLVENSPKCLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLL
Sbjct: 61  KPNKQCCSELAGLVENSPKCLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLL 120

Query: 121 GYPVGSSNSPAPSPGVQPPDAGGSSTTDTPGNSGNRASSIDHLRLAFPLGLALAFIPALF 180
           GYPVGSSNSPAPSPGVQPPDAGGSSTTDTPGNSGNRASSIDHLRLAFPLGLALAFIPALF
Sbjct: 121 GYPVGSSNSPAPSPGVQPPDAGGSSTTDTPGNSGNRASSIDHLRLAFPLGLALAFIPALF 180

[Close]

BLAST of Cucsa.142650 vs. NCBI nr
Match: gi|659100398|ref|XP_008451079.1| (PREDICTED: non-specific lipid transfer protein GPI-anchored 2 isoform X2 [Cucumis melo])

HSP 1 Score: 308.1 bits (788), Expect = 9.9e-81
Identity = 155/178 (87.08%), Postives = 161/178 (90.45%), Query Frame = 1


Query: 3   AGGPWILAVAVLVIMAIEGISGQAPAPGPGAVGEVDCFTTLLGMSDCLPYVTTGSNDTKP 62
           A G WILA+AV   MAIEGISGQAPAPGP   GEVDCFTTLL MSDCL YVT GSNDTKP
Sbjct: 2   AAGAWILALAVAT-MAIEGISGQAPAPGPA--GEVDCFTTLLNMSDCLSYVTAGSNDTKP 61

Query: 63  NKQCCSELAGLVENSPKCLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLLGY 122
           NKQCCSELAGLVE+SPKCLCELLSDPDKVG TIDVDRAMKLP+QC +STP ISLCSLLG+
Sbjct: 62  NKQCCSELAGLVESSPKCLCELLSDPDKVGLTIDVDRAMKLPSQCRISTPPISLCSLLGF 121

Query: 123 PVGSSNSPAPSPGVQPPDAGGSSTTDTPGNSGNRASSIDHLRLAFPLGLALAFIPALF 181
           PVGS  SPAPSPGVQPPDAGGSSTTDTPGN GNRASSI+HLRLAFPLGLALAFIPALF
Sbjct: 122 PVGS--SPAPSPGVQPPDAGGSSTTDTPGNGGNRASSINHLRLAFPLGLALAFIPALF 174

[Close]

BLAST of Cucsa.142650 vs. NCBI nr
Match: gi|659100396|ref|XP_008451078.1| (PREDICTED: non-specific lipid transfer protein GPI-anchored 2 isoform X1 [Cucumis melo])

HSP 1 Score: 306.2 bits (783), Expect = 3.8e-80
Identity = 152/178 (85.39%), Postives = 160/178 (89.89%), Query Frame = 1


Query: 3   AGGPWILAVAVLVIMAIEGISGQAPAPGPGAVGEVDCFTTLLGMSDCLPYVTTGSNDTKP 62
           A G WILA+AV   MAIEGISGQAPAPGP   GEVDCFTTLL MSDCL YVT GSNDTKP
Sbjct: 2   AAGAWILALAVAT-MAIEGISGQAPAPGPA--GEVDCFTTLLNMSDCLSYVTAGSNDTKP 61

Query: 63  NKQCCSELAGLVENSPKCLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLLGY 122
           NKQCCSELAGLVE+SPKCLCELLSDPDKVG TIDVDRAMKLP+QC +STP ISLCSLLG+
Sbjct: 62  NKQCCSELAGLVESSPKCLCELLSDPDKVGLTIDVDRAMKLPSQCRISTPPISLCSLLGF 121

Query: 123 PVGSSNSPAPSPGVQPPDAGGSSTTDTPGNSGNRASSIDHLRLAFPLGLALAFIPALF 181
           PVGSS +P+P  GVQPPDAGGSSTTDTPGN GNRASSI+HLRLAFPLGLALAFIPALF
Sbjct: 122 PVGSSPAPSPDLGVQPPDAGGSSTTDTPGNGGNRASSINHLRLAFPLGLALAFIPALF 176

[Close]

BLAST of Cucsa.142650 vs. NCBI nr
Match: gi|568832384|ref|XP_006470415.1| (PREDICTED: non-specific lipid transfer protein GPI-anchored 2-like [Citrus sinensis])

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 87/175 (49.71%), Postives = 111/175 (63.43%), Query Frame = 1


Query: 10  AVAVLVIMAIEGISGQAPAPGPG-AVG-----EVDCFTTLLGMSDCLPYVTTGSNDTKPN 69
           A  ++++  I   SGQA APGP  A G     E DC T +L MSDCL YVT GSN T P+
Sbjct: 17  AFFLIMVSCIGSSSGQALAPGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPD 76

Query: 70  KQCCSELAGLVENSPKCLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLLGYP 129
           K CC ELAGLVE++P CLC+LL   +K G  ID+ RA+KLP+ C VSTP ++LCSL G P
Sbjct: 77  KPCCPELAGLVESNPICLCQLLGKNNKYGIKIDMTRALKLPSVCGVSTPPVNLCSLAGVP 136

Query: 130 V-GSSNSPAP-SPGVQPPDAGGSSTTDTPGNSGNRASSIDHLRLAFPLGLALAFI 177
           +   + SP P SPG QPP   G + + + GN+ N AS      L   +GLA+AF+
Sbjct: 137 IEAPTGSPGPASPGTQPP--SGLAASPSNGNNDNAASGNAGSVLCLLVGLAVAFL 189

[Close]

BLAST of Cucsa.142650 vs. NCBI nr
Match: gi|1009113693|ref|XP_015873284.1| (PREDICTED: non-specific lipid transfer protein GPI-anchored 2 [Ziziphus jujuba])

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-33
Identity = 87/186 (46.77%), Postives = 112/186 (60.22%), Query Frame = 1


Query: 8   ILAVAVLVIMAIEGISGQ-----APAPGPGAVGEVDCFTTLLGMSDCLPYVTTGSNDTKP 67
           ++ V V ++M+  G+S       APAPGP +    DCFT +LG++DCL YV  GSN T P
Sbjct: 11  MVVVVVAMLMSFYGVSAHDAPIAAPAPGPSST---DCFTVVLGLADCLSYVQEGSNVTVP 70

Query: 68  NKQCCSELAGLVENSPKCLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLLGY 127
           +K CC EL GLV+NSP CLC LL++ + +G  ID  RA+ LP+ C V+TP  SLCSL GY
Sbjct: 71  DKPCCPELKGLVDNSPICLCYLLANSNSLGVPIDTKRALNLPSVCKVTTPPPSLCSLAGY 130

Query: 128 PV-GSSNSPAPSPGVQP-------PDAGGSSTTDTPGNSGNRASSIDHLRLAFPLGLALA 181
           PV G  +S   SPG QP       P  G +S  D  G S N ASS     +A  +G A+A
Sbjct: 131 PVPGPVSSEIASPGPQPSEGSVSSPSPGATSKNDN-GASSNAASS----AMALLIGFAIA 188

The following BLAST results are available for this feature:

BLAST of Cucsa.142650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LTPG2_ARATH	3.2e-23	41.51	Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana GN=LT...	[more]
XYP11_ARATH	9.4e-23	41.22	Xylogen-like protein 11 OS=Arabidopsis thaliana GN=XYP11 PE=1 SV=2	[more]
NLTL2_ARATH	3.7e-19	33.33	Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thalia...	[more]
NLTL5_ARATH	4.5e-17	32.45	Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thalia...	[more]
NLTL1_ORYSJ	1.0e-13	32.19	Non-specific lipid transfer protein-like 1 OS=Oryza sativa subsp. japonica GN=LT...	[more]

BLAST of Cucsa.142650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M2I0_CUCSA	1.1e-99	100.00	Lipid binding protein OS=Cucumis sativus GN=Csa_1G600910 PE=4 SV=1	[more]
A0A067FT09_CITSI	5.3e-33	48.57	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029668mg PE=4 SV=1	[more]
B9S6L0_RICCO	3.5e-32	49.39	Lipid binding protein, putative OS=Ricinus communis GN=RCOM_1109430 PE=4 SV=1	[more]
A0A059DAP6_EUCGR	5.9e-32	47.02	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03788 PE=4 SV=1	[more]
V4TH15_9ROSI	1.7e-31	48.55	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016831mg PE=4 SV=1	[more]

BLAST of Cucsa.142650 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G43720.1	1.8e-24	41.51	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT2G27130.1	5.3e-24	41.22	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT2G13820.1	2.1e-20	33.33	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT3G22600.1	1.0e-19	37.76	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT5G64080.1	2.5e-18	32.45	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]

BLAST of Cucsa.142650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452718\|ref\|XP_004144106.1\|	1.6e-99	100.00	PREDICTED: xylogen-like protein 11 [Cucumis sativus]	[more]
gi\|659100398\|ref\|XP_008451079.1\|	9.9e-81	87.08	PREDICTED: non-specific lipid transfer protein GPI-anchored 2 isoform X2 [Cucumi...	[more]
gi\|659100396\|ref\|XP_008451078.1\|	3.8e-80	85.39	PREDICTED: non-specific lipid transfer protein GPI-anchored 2 isoform X1 [Cucumi...	[more]
gi\|568832384\|ref\|XP_006470415.1\|	1.2e-33	49.71	PREDICTED: non-specific lipid transfer protein GPI-anchored 2-like [Citrus sinen...	[more]
gi\|1009113693\|ref\|XP_015873284.1\|	1.5e-33	46.77	PREDICTED: non-specific lipid transfer protein GPI-anchored 2 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.142650.1	Cucsa.142650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 15..117 score: 6.4
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 39..117 score: 4.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 37..118 score: 1.83
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 37..117 score: 6.3
None	No IPR available	PANTHER	PTHR33044	FAMILY NOT NAMED	coord: 8..180 score: 5.1
None	No IPR available	PANTHER	PTHR33044:SF24	NON-SPECIFIC LIPID TRANSFER PROTEIN GPI-ANCHORED 2-RELATED	coord: 8..180 score: 5.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.142650	Cla011078	Watermelon (97103) v1	cgywmB251
Cucsa.142650	Csa1G600910	Cucumber (Chinese Long) v2	cgycuB205
Cucsa.142650	MELO3C015618	Melon (DHL92) v3.5.1	cgymeB238
Cucsa.142650	ClCG03G014210	Watermelon (Charleston Gray)	cgywcgB242
Cucsa.142650	CSPI01G29600	Wild cucumber (PI 183967)	cgycpiB208
Cucsa.142650	CmaCh10G009830	Cucurbita maxima (Rimu)	cgycmaB0395
Cucsa.142650	CmoCh10G010370	Cucurbita moschata (Rifu)	cgycmoB0395
Cucsa.142650	Lsi06G004320	Bottle gourd (USVL1VR-Ls)	cgylsiB230
Cucsa.142650	Cp4.1LG18g01220	Cucurbita pepo (Zucchini)	cgycpeB0382
Cucsa.142650	MELO3C015618.2	Melon (DHL92) v3.6.1	cgymedB235
Cucsa.142650	CsaV3_1G042030	Cucumber (Chinese Long) v3	cgycucB213
Cucsa.142650	Cla97C03G064400	Watermelon (97103) v2	cgywmbB241
Cucsa.142650	Bhi02G001394	Wax gourd	cgywgoB280
Cucsa.142650	Carg06148	Silver-seed gourd	carcgyB0020

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.142650	Wax gourd	cgywgoB282
Cucsa.142650	Cucurbita maxima (Rimu)	cgycmaB0396
Cucsa.142650	Cucurbita moschata (Rifu)	cgycmoB0396
Cucsa.142650	Cucurbita pepo (Zucchini)	cgycpeB0385
Cucsa.142650	Silver-seed gourd	carcgyB0212