Carg06148 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06148
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Non-specific lipid-transfer protein-like protein
Location	Cucurbita_argyrosperma_scaffold_026 : 1343554 .. 1345342 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTCCCTTCTTCTGTCTCTCTCTCTCTATATCTCTCTCCTCCTCCTCCTCTTCTCTTCAATTCCACCGCCAACCAACTCAAACCCTAGAAAACGAAACAACCGTCTCGATCTACACCAATGGCGACGCCCTCGATCTTCGCGCTAGCGGCGGTGTTAATCGCGATTCACGGCATTGCAGGGGCGGTGGCGCAGGCTCCGGCGCCGGGGCCAGCGGTTGCGACGGACTGCTTCACGACGCTGCTGAATATGTCGGATTGCCTGTCGTACGTGTCGGCGGGGAGCAAGGACGTGAAGCCGGACAAGCATTGCTGCCCGGAGCTGGCGGGGCTGGTGGAGAGTAGCCCTAGCTGCCTCTGTCAGCTGCTTAGCGATCCTAATAAAGTTGGGTTAACCATTGATGTCGACAGAGCTATGAAGCTTCCTTCCGCCTGCAATGTCTCCACTCCTCCCGTCAATCTCTGTTCTCGTAAGCTTTCTTTTCCCTTTCCTTAAATAAAAAAAAATTTAAAAAAATTTTAAAAAAAATTTAAAATTAAAATGTTTAATCTTTTTAAAATACCCAATTTAATCTTTTTTTTTTCTTCTTTTTAATGGAAATTTTCAATTATGATTCAAATTTATATTCCATGATTTTTCAATTTTTCAATCTGCCCCTAAGTTTTTGGAGATTTGTAGCTATTAAGTCCCTCAAACTTCAAAAATTACACCTTAATTGTAACGACCCAGATCCACCACGGTTAGATATTATCCTCTTTGGACCTTCTCGGCTTTAAAATGCATCTGCTAAGGGAAGGTTTTCACACTCTTATAAAGGGTGGTTTGTTCTCCTCCCAATCAATGTGGGACACATCTGCTAAGGGAAGGTTTTTATACTCTTATAAAGGGTGGTTTGTCCTCCTCCCAATCAATGTGGACTTTCCCTTTTGGGCTTCACCTCGAGACTTTAAAACGCATTTGTGATCCCTTTTGGGCTTCACCTCGAGACTTTAAAACGCATTTGTGAGGAGAAAGTTTACACACCCTTATAAAGTTTAAGGACTAAATTGTTATTTTACGAAAATCGAAGCATTTTTTAATACTAAGTTCAAGTTTAATTGAAAGTTTAAAAACATTGTTATTTTATGAAAATCGAAGCATTTTTTAATATTAAGATCATGGAAATTGGAAGTTCAAAAACATTCTTAAAACAATCAAACAAACATAAACTAATTTATTACCAAATGACTTTTATGTTTCAAATTTGCAACAAACATGAACTAAGAACATGCTAGTTTCCCTCCATGAACAAAATTCAAATAAATTTTGAGGCTTAGATCAGTCTTAAAAGCATCATAAGAGGGAGGTTCGTAGCTCAAACCTGCTTGTTTTGAATGCAGTTTTGGGATTTCCGGTGGGATCAAATAGTCCCGGATCAGCCCCAGCACCAGCACCAGGACCAGGTACTAAATCTTCCATACTCTACATTCTAAGTTCATGGTTTGAGTTTATTCTGAACGAAAATTTCGAATGTTAAAACGCACCTAGGTGTTCAACCACTGGACGATGGAGGCTCCGCCACCCCCGGTACCCCGGGAAGCAGCGGGAATAGGGCTTCGAGCATCAACCACCTTCATCTCGCATTTCTGCTTGGCATAGCCTTGGGATTTCTTTCGACGCTTCTCTAACCGAGATATCTTTGATTGTCTGTTATTGTTTGCCAATTCTTCTGTCTTTCCTTTTCAGTTCATATGTAGTATTGTACTGAGATATTTTCATGATTGTTAGGCAATAAAAGTTAGTTTCTATTG

mRNA sequence

ACTTCCCTTCTTCTGTCTCTCTCTCTCTATATCTCTCTCCTCCTCCTCCTCTTCTCTTCAATTCCACCGCCAACCAACTCAAACCCTAGAAAACGAAACAACCGTCTCGATCTACACCAATGGCGACGCCCTCGATCTTCGCGCTAGCGGCGGTGTTAATCGCGATTCACGGCATTGCAGGGGCGGTGGCGCAGGCTCCGGCGCCGGGGCCAGCGGTTGCGACGGACTGCTTCACGACGCTGCTGAATATGTCGGATTGCCTGTCGTACGTGTCGGCGGGGAGCAAGGACGTGAAGCCGGACAAGCATTGCTGCCCGGAGCTGGCGGGGCTGGTGGAGAGTAGCCCTAGCTGCCTCTGTCAGCTGCTTAGCGATCCTAATAAAGTTGGGTTAACCATTGATGTCGACAGAGCTATGAAGCTTCCTTCCGCCTGCAATGTCTCCACTCCTCCCGTCAATCTCTGTTCTCTTTTGGGATTTCCGGTGGGATCAAATAGTCCCGGATCAGCCCCAGCACCAGCACCAGGACCAGGTGTTCAACCACTGGACGATGGAGGCTCCGCCACCCCCGGTACCCCGGGAAGCAGCGGGAATAGGGCTTCGAGCATCAACCACCTTCATCTCGCATTTCTGCTTGGCATAGCCTTGGGATTTCTTTCGACGCTTCTCTAACCGAGATATCTTTGATTGTCTGTTATTGTTTGCCAATTCTTCTGTCTTTCCTTTTCAGTTCATATGTAGTATTGTACTGAGATATTTTCATGATTGTTAGGCAATAAAAGTTAGTTTCTATTG

Coding sequence (CDS)

ATGGCGACGCCCTCGATCTTCGCGCTAGCGGCGGTGTTAATCGCGATTCACGGCATTGCAGGGGCGGTGGCGCAGGCTCCGGCGCCGGGGCCAGCGGTTGCGACGGACTGCTTCACGACGCTGCTGAATATGTCGGATTGCCTGTCGTACGTGTCGGCGGGGAGCAAGGACGTGAAGCCGGACAAGCATTGCTGCCCGGAGCTGGCGGGGCTGGTGGAGAGTAGCCCTAGCTGCCTCTGTCAGCTGCTTAGCGATCCTAATAAAGTTGGGTTAACCATTGATGTCGACAGAGCTATGAAGCTTCCTTCCGCCTGCAATGTCTCCACTCCTCCCGTCAATCTCTGTTCTCTTTTGGGATTTCCGGTGGGATCAAATAGTCCCGGATCAGCCCCAGCACCAGCACCAGGACCAGGTGTTCAACCACTGGACGATGGAGGCTCCGCCACCCCCGGTACCCCGGGAAGCAGCGGGAATAGGGCTTCGAGCATCAACCACCTTCATCTCGCATTTCTGCTTGGCATAGCCTTGGGATTTCTTTCGACGCTTCTCTAA

Protein sequence

MATPSIFALAAVLIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCCPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGFPVGSNSPGSAPAPAPGPGVQPLDDGGSATPGTPGSSGNRASSINHLHLAFLLGIALGFLSTLL

Homology

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BLAST of Carg06148 vs. NCBI nr
Match: XP_022960576.1 (non-specific lipid transfer protein GPI-anchored 2-like [Cucurbita moschata])

HSP 1 Score: 334.0 bits (855), Expect = 3.3e-88
Identity = 181/183 (98.91%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MATPSIFALAAVLIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKP 60
           MATPSIFALAAV+IAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKP
Sbjct: 1   MATPSIFALAAVIIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKP 60

Query: 61  DKHCCPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGF 120
           DKHCCPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGF
Sbjct: 61  DKHCCPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGF 120

Query: 121 PVGSNSPGSXXXXXXXXXVQPLDDGGSATPGTPGSSGNRASSINHLHLAFLLGIALGFLS 180
           PVGSNSPGSXXXXXXXXXVQPLDDGGSATPGTPGSSGNRASSIN LHLAFLLGIALGFLS
Sbjct: 121 PVGSNSPGSXXXXXXXXXVQPLDDGGSATPGTPGSSGNRASSINRLHLAFLLGIALGFLS 180

Query: 181 TLL 184
           TLL
Sbjct: 181 TLL 183

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BLAST of Carg06148 vs. NCBI nr
Match: XP_023516231.1 (non-specific lipid transfer protein GPI-anchored 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.2 bits (840), Expect = 1.8e-86
Identity = 179/183 (97.81%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MATPSIFALAAVLIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKP 60
           MATPSI ALAAV+IAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKP
Sbjct: 1   MATPSICALAAVIIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKP 60

Query: 61  DKHCCPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGF 120
           DKHCCPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGF
Sbjct: 61  DKHCCPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGF 120

Query: 121 PVGSNSPGSXXXXXXXXXVQPLDDGGSATPGTPGSSGNRASSINHLHLAFLLGIALGFLS 180
           PVGSNSPGSXXXXXXXXXVQPLDDGGSATPGTPGSSGNRASSIN LHLAF LGIALGFLS
Sbjct: 121 PVGSNSPGSXXXXXXXXXVQPLDDGGSATPGTPGSSGNRASSINRLHLAFPLGIALGFLS 180

Query: 181 TLL 184
           TLL
Sbjct: 181 TLL 183

[Close]

BLAST of Carg06148 vs. NCBI nr
Match: XP_022988217.1 (non-specific lipid transfer protein GPI-anchored 2-like [Cucurbita maxima])

HSP 1 Score: 308.5 bits (789), Expect = 1.5e-80
Identity = 170/183 (92.90%), Postives = 172/183 (93.99%), Query Frame = 0


Query: 1   MATPSIFALAAVLIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKP 60
           MATPSIFALAAV+IAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKD KP
Sbjct: 1   MATPSIFALAAVIIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDAKP 60

Query: 61  DKHCCPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGF 120
           DKHCCPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGF
Sbjct: 61  DKHCCPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGF 120

Query: 121 PVGSNSPGSXXXXXXXXXVQPLDDGGSATPGTPGSSGNRASSINHLHLAFLLGIALGFLS 180
           PVGSNS   XXXXXXXXX    D+GGSA PGTPGSSGNRASSIN LHLAF LGIALGFLS
Sbjct: 121 PVGSNSXXXXXXXXXXXXXXXXDNGGSAIPGTPGSSGNRASSINRLHLAFPLGIALGFLS 180

Query: 181 TLL 184
           TLL
Sbjct: 181 TLL 183

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BLAST of Carg06148 vs. NCBI nr
Match: XP_008451079.1 (PREDICTED: non-specific lipid transfer protein GPI-anchored 2 isoform X2 [Cucumis melo])

HSP 1 Score: 232.6 bits (592), Expect = 1.0e-57
Identity = 125/180 (69.44%), Postives = 139/180 (77.22%), Query Frame = 0


Query: 6   IFALAAVLIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCC 65
           I ALA   +AI GI+G   QAPAPGPA   DCFTTLLNMSDCLSYV+AGS D KP+K CC
Sbjct: 7   ILALAVATMAIEGISG---QAPAPGPAGEVDCFTTLLNMSDCLSYVTAGSNDTKPNKQCC 66

Query: 66  PELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGFPVGSN 125
            ELAGLVESSP CLC+LLSDP+KVGLTIDVDRAMKLPS C +STPP++LCSLLGFPVGS+
Sbjct: 67  SELAGLVESSPKCLCELLSDPDKVGLTIDVDRAMKLPSQCRISTPPISLCSLLGFPVGSS 126

Query: 126 ---SPGSXXXXXXXXXVQPLDDGGSATPGTPGSSGNRASSINHLHLAFLLGIALGFLSTL 183
              SPG          VQP D GGS+T  TPG+ GNRASSINHL LAF LG+AL F+  L
Sbjct: 127 PAPSPG----------VQPPDAGGSSTTDTPGNGGNRASSINHLRLAFPLGLALAFIPAL 173

[Close]

BLAST of Carg06148 vs. NCBI nr
Match: XP_008451078.1 (PREDICTED: non-specific lipid transfer protein GPI-anchored 2 isoform X1 [Cucumis melo])

HSP 1 Score: 231.9 bits (590), Expect = 1.8e-57
Identity = 123/177 (69.49%), Postives = 137/177 (77.40%), Query Frame = 0


Query: 6   IFALAAVLIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCC 65
           I ALA   +AI GI+G   QAPAPGPA   DCFTTLLNMSDCLSYV+AGS D KP+K CC
Sbjct: 7   ILALAVATMAIEGISG---QAPAPGPAGEVDCFTTLLNMSDCLSYVTAGSNDTKPNKQCC 66

Query: 66  PELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGFPVGSN 125
            ELAGLVESSP CLC+LLSDP+KVGLTIDVDRAMKLPS C +STPP++LCSLLGFPVGS+
Sbjct: 67  SELAGLVESSPKCLCELLSDPDKVGLTIDVDRAMKLPSQCRISTPPISLCSLLGFPVGSS 126

Query: 126 SPGSXXXXXXXXXVQPLDDGGSATPGTPGSSGNRASSINHLHLAFLLGIALGFLSTL 183
              S         VQP D GGS+T  TPG+ GNRASSINHL LAF LG+AL F+  L
Sbjct: 127 PAPS-----PDLGVQPPDAGGSSTTDTPGNGGNRASSINHLRLAFPLGLALAFIPAL 175

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BLAST of Carg06148 vs. TAIR10
Match: AT3G43720.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 110.9 bits (276), Expect = 8.3e-25
Identity = 69/168 (41.07%), Postives = 96/168 (57.14%), Query Frame = 0


Query: 1   MATPSIFALAAVLIAIHG-IAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKD-- 60
           M+   + A+  ++ ++ G ++  +  +P+ GP+ A DC   L+NM+ CLSYV+ G     
Sbjct: 1   MSNVVVIAVVLIVASLTGHVSAQMDMSPSSGPSGAPDCMANLMNMTGCLSYVTVGEGGGA 60

Query: 61  VKPDKHCCPELAGLVESSPSCLCQLLSD--PNKVGLTIDVDRAMKLPSACNVSTPPVNLC 120
            KPDK CCP LAGLVESSP CLC LLS     ++G+ ID  +A+KLP  C V TP  +LC
Sbjct: 61  AKPDKTCCPALAGLVESSPQCLCYLLSGDMAAQLGIKIDKAKALKLPGVCGVITPDPSLC 120

Query: 121 SLLGFPVGSNSPGSXXXXXXXXXVQPLDDGGSATPGTPGS--SGNRAS 162
           SL G PVG  +P +           P    G+ +PG  GS  S +R S
Sbjct: 121 SLFGIPVG--APVAMGDEGASPAYAPGSMSGAESPGGFGSGPSASRGS 166

[Close]

BLAST of Carg06148 vs. TAIR10
Match: AT2G27130.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-20
Identity = 63/178 (35.39%), Postives = 93/178 (52.25%), Query Frame = 0


Query: 12  VLIAIHGIAGAVAQAPAP----GPAVATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCCPE 71
           +L+ +   +G    AP P    GP+   +C  ++LN+SDC SYV  GS ++KP+  CCPE
Sbjct: 11  LLLFLSLCSGQSPPAPEPIAADGPSSPVNCLVSMLNVSDCFSYVQVGSNEIKPEAACCPE 70

Query: 72  LAGLVESSPSCLCQLLSD--PNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGFPVGSN 131
           LAG+V+SSP C+C L       + G+ +D  RA +L + C V  P  +LCS+LGFP  S 
Sbjct: 71  LAGMVQSSPECVCNLYGGGASPRFGVKLDKQRAEQLSTICGVKAPSPSLCSVLGFPTISP 130

Query: 132 SPGSXXXXXXXXXVQPLDDGGSATPGTPGSSGNRASSINHLHLAFLLGIALGFLSTLL 184
           + GS             +D  S + G+     N A +  +       G+AL  L+ LL
Sbjct: 131 A-GS-------------EDSSSGSEGSDKDKKNGAMTTKY------CGVALNSLALLL 168

[Close]

BLAST of Carg06148 vs. TAIR10
Match: AT2G13820.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-18
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 34  ATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCCPELAGLVESSPSCLCQLLSDPNKVGLTI 93
           A DC + +LNM+DCLS+V++GS  VKP+  CC  L  +V + P CLC+   +   +GLT+
Sbjct: 24  AVDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSGSLGLTL 83

Query: 94  DVDRAMKLPSACNVSTPPVNLCSL 118
           D+ +A  LPS C V+ PP   C L
Sbjct: 84  DLSKAASLPSVCKVAAPPSARCGL 107

[Close]

BLAST of Carg06148 vs. TAIR10
Match: AT4G08670.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-15
Identity = 37/104 (35.58%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 26  APAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCCPELAGLVESSPSCLCQLLSD 85
           APAPGP+ ++DC T + +M DCL Y+  GS + KP+K CC  +  +++ +P C+C  L  
Sbjct: 38  APAPGPS-SSDCSTVIYSMMDCLGYLGVGSNETKPEKSCCTGIETVLQYNPQCICAGLVS 97

Query: 86  PNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGFPVGSNSPGS 130
             ++G+ ++  RA+  P AC +S  P + C ++    G+ +PG+
Sbjct: 98  AGEMGIELNSTRALATPKACKLSIAPPH-CGII--TSGATTPGA 137

[Close]

BLAST of Carg06148 vs. TAIR10
Match: AT5G64080.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-15
Identity = 39/116 (33.62%), Postives = 66/116 (56.90%), Query Frame = 0


Query: 2   ATPSIFALAAVLIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKPD 61
           AT  +F +  + ++   + GA +   A  PA + DC T +LNM+DCLS+VS+G    KP+
Sbjct: 9   ATTPLFLIVLLSLSSVSVLGA-SHHHATAPAPSVDCSTLILNMADCLSFVSSGGTVAKPE 68

Query: 62  KHCCPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSL 118
             CC  L  ++++   CLC+       +G+T+++ +A  LP+AC +  P +  C L
Sbjct: 69  GTCCSGLKTVLKADSQCLCEAFKSSASLGVTLNITKASTLPAACKLHAPSIATCGL 123

[Close]

BLAST of Carg06148 vs. Swiss-Prot
Match: sp|Q9LZH5|LTPG2_ARATH (Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana OX=3702 GN=LTPG2 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-23
Identity = 69/168 (41.07%), Postives = 96/168 (57.14%), Query Frame = 0


Query: 1   MATPSIFALAAVLIAIHG-IAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKD-- 60
           M+   + A+  ++ ++ G ++  +  +P+ GP+ A DC   L+NM+ CLSYV+ G     
Sbjct: 1   MSNVVVIAVVLIVASLTGHVSAQMDMSPSSGPSGAPDCMANLMNMTGCLSYVTVGEGGGA 60

Query: 61  VKPDKHCCPELAGLVESSPSCLCQLLSD--PNKVGLTIDVDRAMKLPSACNVSTPPVNLC 120
            KPDK CCP LAGLVESSP CLC LLS     ++G+ ID  +A+KLP  C V TP  +LC
Sbjct: 61  AKPDKTCCPALAGLVESSPQCLCYLLSGDMAAQLGIKIDKAKALKLPGVCGVITPDPSLC 120

Query: 121 SLLGFPVGSNSPGSXXXXXXXXXVQPLDDGGSATPGTPGS--SGNRAS 162
           SL G PVG  +P +           P    G+ +PG  GS  S +R S
Sbjct: 121 SLFGIPVG--APVAMGDEGASPAYAPGSMSGAESPGGFGSGPSASRGS 166

[Close]

BLAST of Carg06148 vs. Swiss-Prot
Match: sp|Q9ZVC7|XYP11_ARATH (Xylogen-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=XYP11 PE=2 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 2.9e-19
Identity = 63/178 (35.39%), Postives = 93/178 (52.25%), Query Frame = 0


Query: 12  VLIAIHGIAGAVAQAPAP----GPAVATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCCPE 71
           +L+ +   +G    AP P    GP+   +C  ++LN+SDC SYV  GS ++KP+  CCPE
Sbjct: 11  LLLFLSLCSGQSPPAPEPIAADGPSSPVNCLVSMLNVSDCFSYVQVGSNEIKPEAACCPE 70

Query: 72  LAGLVESSPSCLCQLLSD--PNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGFPVGSN 131
           LAG+V+SSP C+C L       + G+ +D  RA +L + C V  P  +LCS+LGFP  S 
Sbjct: 71  LAGMVQSSPECVCNLYGGGASPRFGVKLDKQRAEQLSTICGVKAPSPSLCSVLGFPTISP 130

Query: 132 SPGSXXXXXXXXXVQPLDDGGSATPGTPGSSGNRASSINHLHLAFLLGIALGFLSTLL 184
           + GS             +D  S + G+     N A +  +       G+AL  L+ LL
Sbjct: 131 A-GS-------------EDSSSGSEGSDKDKKNGAMTTKY------CGVALNSLALLL 168

[Close]

BLAST of Carg06148 vs. Swiss-Prot
Match: sp|Q9ZQI8|NLTL2_ARATH (Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana OX=3702 GN=At2g13820 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.1e-17
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 34  ATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCCPELAGLVESSPSCLCQLLSDPNKVGLTI 93
           A DC + +LNM+DCLS+V++GS  VKP+  CC  L  +V + P CLC+   +   +GLT+
Sbjct: 24  AVDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSGSLGLTL 83

Query: 94  DVDRAMKLPSACNVSTPPVNLCSL 118
           D+ +A  LPS C V+ PP   C L
Sbjct: 84  DLSKAASLPSVCKVAAPPSARCGL 107

[Close]

BLAST of Carg06148 vs. Swiss-Prot
Match: sp|Q8VYI9|NLTL5_ARATH (Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana OX=3702 GN=At5g64080 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-14
Identity = 39/116 (33.62%), Postives = 66/116 (56.90%), Query Frame = 0


Query: 2   ATPSIFALAAVLIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKPD 61
           AT  +F +  + ++   + GA +   A  PA + DC T +LNM+DCLS+VS+G    KP+
Sbjct: 9   ATTPLFLIVLLSLSSVSVLGA-SHHHATAPAPSVDCSTLILNMADCLSFVSSGGTVAKPE 68

Query: 62  KHCCPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSL 118
             CC  L  ++++   CLC+       +G+T+++ +A  LP+AC +  P +  C L
Sbjct: 69  GTCCSGLKTVLKADSQCLCEAFKSSASLGVTLNITKASTLPAACKLHAPSIATCGL 123

[Close]

BLAST of Carg06148 vs. Swiss-Prot
Match: sp|Q6ASY2|NLTL1_ORYSJ (Non-specific lipid transfer protein-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=LTPL1 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.9e-08
Identity = 37/96 (38.54%), Postives = 54/96 (56.25%), Query Frame = 0


Query: 9   LAAVLIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAG-SKDVKPDKHCCPE 68
           L   L A+ G+ GA A +PAP PAV  DC    L ++DCL YV+ G +   +P K CC E
Sbjct: 14  LVVGLAAVAGVDGATASSPAPAPAV--DCTAEALKLADCLDYVTPGKTAPSRPSKLCCGE 73

Query: 69  LAGLVESSPS--CLCQLLSDPNKVGLTIDVDRAMKL 102
           + G ++ S +  CLC   +    + L I++ RA+ L
Sbjct: 74  VKGALKDSAAVGCLCAAFTS-KTLPLPINITRALHL 106

[Close]

BLAST of Carg06148 vs. TrEMBL
Match: tr|A0A1S3BRS5|A0A1S3BRS5_CUCME (non-specific lipid transfer protein GPI-anchored 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492460 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 6.9e-58
Identity = 125/180 (69.44%), Postives = 139/180 (77.22%), Query Frame = 0


Query: 6   IFALAAVLIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCC 65
           I ALA   +AI GI+G   QAPAPGPA   DCFTTLLNMSDCLSYV+AGS D KP+K CC
Sbjct: 7   ILALAVATMAIEGISG---QAPAPGPAGEVDCFTTLLNMSDCLSYVTAGSNDTKPNKQCC 66

Query: 66  PELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGFPVGSN 125
            ELAGLVESSP CLC+LLSDP+KVGLTIDVDRAMKLPS C +STPP++LCSLLGFPVGS+
Sbjct: 67  SELAGLVESSPKCLCELLSDPDKVGLTIDVDRAMKLPSQCRISTPPISLCSLLGFPVGSS 126

Query: 126 ---SPGSXXXXXXXXXVQPLDDGGSATPGTPGSSGNRASSINHLHLAFLLGIALGFLSTL 183
              SPG          VQP D GGS+T  TPG+ GNRASSINHL LAF LG+AL F+  L
Sbjct: 127 PAPSPG----------VQPPDAGGSSTTDTPGNGGNRASSINHLRLAFPLGLALAFIPAL 173

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BLAST of Carg06148 vs. TrEMBL
Match: tr|A0A1S3BRF5|A0A1S3BRF5_CUCME (non-specific lipid transfer protein GPI-anchored 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492460 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.2e-57
Identity = 123/177 (69.49%), Postives = 137/177 (77.40%), Query Frame = 0


Query: 6   IFALAAVLIAIHGIAGAVAQAPAPGPAVATDCFTTLLNMSDCLSYVSAGSKDVKPDKHCC 65
           I ALA   +AI GI+G   QAPAPGPA   DCFTTLLNMSDCLSYV+AGS D KP+K CC
Sbjct: 7   ILALAVATMAIEGISG---QAPAPGPAGEVDCFTTLLNMSDCLSYVTAGSNDTKPNKQCC 66

Query: 66  PELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGFPVGSN 125
            ELAGLVESSP CLC+LLSDP+KVGLTIDVDRAMKLPS C +STPP++LCSLLGFPVGS+
Sbjct: 67  SELAGLVESSPKCLCELLSDPDKVGLTIDVDRAMKLPSQCRISTPPISLCSLLGFPVGSS 126

Query: 126 SPGSXXXXXXXXXVQPLDDGGSATPGTPGSSGNRASSINHLHLAFLLGIALGFLSTL 183
              S         VQP D GGS+T  TPG+ GNRASSINHL LAF LG+AL F+  L
Sbjct: 127 PAPS-----PDLGVQPPDAGGSSTTDTPGNGGNRASSINHLRLAFPLGLALAFIPAL 175

[Close]

BLAST of Carg06148 vs. TrEMBL
Match: tr|A0A0A0M2I0|A0A0A0M2I0_CUCSA (Lipid binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G600910 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.3e-51
Identity = 115/185 (62.16%), Postives = 133/185 (71.89%), Query Frame = 0


Query: 1   MATPSIFALAAVLIAIHGIAGAVAQAPAPGPAVA--TDCFTTLLNMSDCLSYVSAGSKDV 60
           MA    + LA  ++ I  I G   QAPAPGP      DCFTTLL MSDCL YV+ GS D 
Sbjct: 1   MAAGGPWILAVAVLVIMAIEGISGQAPAPGPGAVGEVDCFTTLLGMSDCLPYVTTGSNDT 60

Query: 61  KPDKHCCPELAGLVESSPSCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLL 120
           KP+K CC ELAGLVE+SP CLC+LLSDP+KVG TIDVDRAMKLP+ C+VSTP ++LCSLL
Sbjct: 61  KPNKQCCSELAGLVENSPKCLCELLSDPDKVGFTIDVDRAMKLPTQCHVSTPSISLCSLL 120

Query: 121 GFPVG-SNSPGSXXXXXXXXXVQPLDDGGSATPGTPGSSGNRASSINHLHLAFLLGIALG 180
           G+PVG SNSP           VQP D GGS+T  TPG+SGNRASSI+HL LAF LG+AL 
Sbjct: 121 GYPVGSSNSPA------PSPGVQPPDAGGSSTTDTPGNSGNRASSIDHLRLAFPLGLALA 179

Query: 181 FLSTL 183
           F+  L
Sbjct: 181 FIPAL 179

[Close]

BLAST of Carg06148 vs. TrEMBL
Match: tr|A0A067FS83|A0A067FS83_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029668mg PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 6.7e-29
Identity = 70/117 (59.83%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 25  QAPAPGPAVA--------TDCFTTLLNMSDCLSYVSAGSKDVKPDKHCCPELAGLVESSP 84
           QA APGP++A         DC T +LNMSDCLSYV+ GS    PDK CCPELAGLVES+P
Sbjct: 32  QALAPGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNP 91

Query: 85  SCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGFPV----GSNSPGS 130
            CLCQLL   N  G+ ID+ RA+KLPS C V+TPPVNLCSL G P+    GS  P S
Sbjct: 92  ICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVPIEAPTGSPGPAS 148

[Close]

BLAST of Carg06148 vs. TrEMBL
Match: tr|A0A067FT09|A0A067FT09_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029668mg PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.5e-28
Identity = 66/106 (62.26%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 25  QAPAPGPAVA--------TDCFTTLLNMSDCLSYVSAGSKDVKPDKHCCPELAGLVESSP 84
           QA APGP++A         DC T +LNMSDCLSYV+ GS    PDK CCPELAGLVES+P
Sbjct: 32  QALAPGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNP 91

Query: 85  SCLCQLLSDPNKVGLTIDVDRAMKLPSACNVSTPPVNLCSLLGFPV 123
            CLCQLL   N  G+ ID+ RA+KLPS C V+TPPVNLCSL G P+
Sbjct: 92  ICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVPI 137

The following BLAST results are available for this feature:

BLAST of Carg06148 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960576.1	3.3e-88	98.91	non-specific lipid transfer protein GPI-anchored 2-like [Cucurbita moschata]	[more]
XP_023516231.1	1.8e-86	97.81	non-specific lipid transfer protein GPI-anchored 2-like [Cucurbita pepo subsp. p...	[more]
XP_022988217.1	1.5e-80	92.90	non-specific lipid transfer protein GPI-anchored 2-like [Cucurbita maxima]	[more]
XP_008451079.1	1.0e-57	69.44	PREDICTED: non-specific lipid transfer protein GPI-anchored 2 isoform X2 [Cucumi...	[more]
XP_008451078.1	1.8e-57	69.49	PREDICTED: non-specific lipid transfer protein GPI-anchored 2 isoform X1 [Cucumi...	[more]

BLAST of Carg06148 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G43720.1	8.3e-25	41.07	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT2G27130.1	1.6e-20	35.39	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT2G13820.1	3.4e-18	45.24	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT4G08670.1	1.2e-15	35.58	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G64080.1	1.6e-15	33.62	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

BLAST of Carg06148 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LZH5\|LTPG2_ARATH	1.5e-23	41.07	Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana OX=37...	[more]
sp\|Q9ZVC7\|XYP11_ARATH	2.9e-19	35.39	Xylogen-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=XYP11 PE=2 SV=2	[more]
sp\|Q9ZQI8\|NLTL2_ARATH	6.1e-17	45.24	Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thalia...	[more]
sp\|Q8VYI9\|NLTL5_ARATH	2.8e-14	33.62	Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thalia...	[more]
sp\|Q6ASY2\|NLTL1_ORYSJ	3.9e-08	38.54	Non-specific lipid transfer protein-like 1 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of Carg06148 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BRS5\|A0A1S3BRS5_CUCME	6.9e-58	69.44	non-specific lipid transfer protein GPI-anchored 2 isoform X2 OS=Cucumis melo OX...	[more]
tr\|A0A1S3BRF5\|A0A1S3BRF5_CUCME	1.2e-57	69.49	non-specific lipid transfer protein GPI-anchored 2 isoform X1 OS=Cucumis melo OX...	[more]
tr\|A0A0A0M2I0\|A0A0A0M2I0_CUCSA	1.3e-51	62.16	Lipid binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G600910 PE=4 SV=1	[more]
tr\|A0A067FS83\|A0A067FS83_CITSI	6.7e-29	59.83	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029668mg PE=4 SV=1	[more]
tr\|A0A067FT09\|A0A067FT09_CITSI	1.5e-28	62.26	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029668mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036312	Bifun_inhib/LTP/seed_sf
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06148-RA	Carg06148-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 37..115 e-value: 2.1E-4 score: 30.6
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 22..115 e-value: 7.7E-16 score: 57.9
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 34..112 e-value: 3.2E-17 score: 64.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..158
None	No IPR available	PANTHER	PTHR33044	FAMILY NOT NAMED	coord: 8..175
None	No IPR available	PANTHER	PTHR33044:SF24	NON-SPECIFIC LIPID TRANSFER PROTEIN GPI-ANCHORED 2-RELATED	coord: 8..175
None	No IPR available	CDD	cd00010	AAI_LTSS	coord: 44..107 e-value: 6.36774E-13 score: 59.7479
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 34..116

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06148	Cla011078	Watermelon (97103) v1	carwmB0018
Carg06148	Csa1G600910	Cucumber (Chinese Long) v2	carcuB0015
Carg06148	MELO3C015618	Melon (DHL92) v3.5.1	carmeB0019
Carg06148	ClCG03G014210	Watermelon (Charleston Gray)	carwcgB0024
Carg06148	CSPI01G29600	Wild cucumber (PI 183967)	carcpiB0015
Carg06148	Cucsa.142650	Cucumber (Gy14) v1	carcgyB0020
Carg06148	CmaCh10G009830	Cucurbita maxima (Rimu)	carcmaB0026
Carg06148	CmoCh10G010370	Cucurbita moschata (Rifu)	carcmoB0027
Carg06148	Lsi06G004320	Bottle gourd (USVL1VR-Ls)	carlsiB021
Carg06148	Cp4.1LG18g01220	Cucurbita pepo (Zucchini)	carcpeB0033
Carg06148	CsGy1G028910	Cucumber (Gy14) v2	carcgybB0014
Carg06148	MELO3C015618.2	Melon (DHL92) v3.6.1	carmedB0020
Carg06148	CsaV3_1G042030	Cucumber (Chinese Long) v3	carcucB0015
Carg06148	Cla97C03G064400	Watermelon (97103) v2	carwmbB0020
Carg06148	Bhi02G001394	Wax gourd	carwgoB0026

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None