Cp4.1LG15g07280 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG15g07280
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionEukaryotic translation initiation factor 1A
LocationCp4.1LG15 : 7576707 .. 7576943 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAAGAAAGTTATGAATGAGGCAGATGATGAGAAGTATAAGCTTTGTTTAAGGAGGACGAGGAGGAATAGGACTAAACATCTTTGCCATGTTCGGGGAAATATGCACAAGAAAGTTAGGATTGCAGCTCAGGGTATCATATTCAGTGGACTTCAGGACTATCAAGACGACAAAGCTGATATGATTCTCAAATACATGCCTGATGAAGCCAGGCTTTCGAAAGCTTTATCGTGA

mRNA sequence

ATGTATAAGAAAGTTATGAATGAGGCAGATGATGAGAAGTATAAGCTTTGTTTAAGGAGGACGAGGAGGAATAGGACTAAACATCTTTGCCATGTTCGGGGAAATATGCACAAGAAAGTTAGGATTGCAGCTCAGGGTATCATATTCAGTGGACTTCAGGACTATCAAGACGACAAAGCTGATATGATTCTCAAATACATGCCTGATGAAGCCAGGCTTTCGAAAGCTTTATCGTGA

Coding sequence (CDS)

ATGTATAAGAAAGTTATGAATGAGGCAGATGATGAGAAGTATAAGCTTTGTTTAAGGAGGACGAGGAGGAATAGGACTAAACATCTTTGCCATGTTCGGGGAAATATGCACAAGAAAGTTAGGATTGCAGCTCAGGGTATCATATTCAGTGGACTTCAGGACTATCAAGACGACAAAGCTGATATGATTCTCAAATACATGCCTGATGAAGCCAGGCTTTCGAAAGCTTTATCGTGA

Protein sequence

MYKKVMNEADDEKYKLCLRRTRRNRTKHLCHVRGNMHKKVRIAAQGIIFSGLQDYQDDKADMILKYMPDEARLSKALS
BLAST of Cp4.1LG15g07280 vs. Swiss-Prot
Match: IF1A_ONOVI (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 5.3e-15
Identity = 50/93 (53.76%), Postives = 55/93 (59.14%), Query Frame = 1

Query: 3   KKVMNEADDEK-----------YKLCLRRTRRNR--------TKHLCHVRGNMHKKVRIA 62
           K+  NEADD+K           Y   LR     R        TK LCH+RG MHKKV IA
Sbjct: 13  KRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIA 72

Query: 63  AQGIIFSGLQDYQDDKADMILKYMPDEARLSKA 77
           A  II  GL+DYQDDKAD+ILK MPDEARL KA
Sbjct: 73  AGDIILVGLRDYQDDKADVILKLMPDEARLLKA 105

BLAST of Cp4.1LG15g07280 vs. Swiss-Prot
Match: IF1A_WHEAT (Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-14
Identity = 46/93 (49.46%), Postives = 56/93 (60.22%), Query Frame = 1

Query: 3   KKVMNEADDEKYKLCLRRTRR-------------------NRTKHLCHVRGNMHKKVRIA 62
           K+  NEADD+K +L  +   +                   + TK LCH+RG MHKKV IA
Sbjct: 13  KRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKKVWIA 72

Query: 63  AQGIIFSGLQDYQDDKADMILKYMPDEARLSKA 77
           A  I+  GL+DYQDDKAD+ILKYM DEARL KA
Sbjct: 73  AGDIVLVGLRDYQDDKADVILKYMNDEARLLKA 105

BLAST of Cp4.1LG15g07280 vs. Swiss-Prot
Match: IF1AX_HUMAN (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 8.8e-10
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 1

Query: 27  KHLCHVRGNMHKKVRIAAQGIIFSGLQDYQDDKADMILKYMPDEARLSKA 77
           K LCH+RG + KKV I    II  GL+DYQD+KAD+ILKY  DEAR  KA
Sbjct: 56  KRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKA 105

BLAST of Cp4.1LG15g07280 vs. Swiss-Prot
Match: IF1AX_MOUSE (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 8.8e-10
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 1

Query: 27  KHLCHVRGNMHKKVRIAAQGIIFSGLQDYQDDKADMILKYMPDEARLSKA 77
           K LCH+RG + KKV I    II  GL+DYQD+KAD+ILKY  DEAR  KA
Sbjct: 56  KRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKA 105

BLAST of Cp4.1LG15g07280 vs. Swiss-Prot
Match: IF1AX_PONAB (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 8.8e-10
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 1

Query: 27  KHLCHVRGNMHKKVRIAAQGIIFSGLQDYQDDKADMILKYMPDEARLSKA 77
           K LCH+RG + KKV I    II  GL+DYQD+KAD+ILKY  DEAR  KA
Sbjct: 56  KRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKA 105

BLAST of Cp4.1LG15g07280 vs. TrEMBL
Match: A0A0D2MUE8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G061900 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-14
Identity = 51/93 (54.84%), Postives = 58/93 (62.37%), Query Frame = 1

Query: 3   KKVMNEADDEKYKLCLRRTRR-------------------NRTKHLCHVRGNMHKKVRIA 62
           K+  NEADDEK +L L+   +                   + TK LCHVRG MHKKV IA
Sbjct: 13  KRGKNEADDEKRELVLKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHVRGKMHKKVWIA 72

Query: 63  AQGIIFSGLQDYQDDKADMILKYMPDEARLSKA 77
           A  II  GL+DYQDDKAD+ILKYMPDEARL KA
Sbjct: 73  AGDIILVGLRDYQDDKADVILKYMPDEARLLKA 105

BLAST of Cp4.1LG15g07280 vs. TrEMBL
Match: G7ZYQ6_MEDTR (Eukaryotic translation initiation factor 1A OS=Medicago truncatula GN=MTR_8g028180 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-14
Identity = 53/95 (55.79%), Postives = 57/95 (60.00%), Query Frame = 1

Query: 3   KKVMNEADDEK-----------YKLCLRRTRRNR--------TKHLCHVRGNMHKKVRIA 62
           K+  NEADDEK           Y   LR     R        TK LCH+RG MHKKV IA
Sbjct: 13  KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIA 72

Query: 63  AQGIIFSGLQDYQDDKADMILKYMPDEARLSKALS 79
           A  II  GL+DYQDDKAD+ILKYMPDEARL KA S
Sbjct: 73  AGDIILVGLRDYQDDKADVILKYMPDEARLLKAYS 107

BLAST of Cp4.1LG15g07280 vs. TrEMBL
Match: I3SEC1_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-14
Identity = 53/95 (55.79%), Postives = 57/95 (60.00%), Query Frame = 1

Query: 3   KKVMNEADDEK-----------YKLCLRRTRRNR--------TKHLCHVRGNMHKKVRIA 62
           K+  NEADDEK           Y   LR     R        TK LCH+RG MHKKV IA
Sbjct: 13  KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIA 72

Query: 63  AQGIIFSGLQDYQDDKADMILKYMPDEARLSKALS 79
           A  II  GL+DYQDDKAD+ILKYMPDEARL KA S
Sbjct: 73  AGDIILVGLRDYQDDKADVILKYMPDEARLLKAYS 107

BLAST of Cp4.1LG15g07280 vs. TrEMBL
Match: B5M1Y2_RHEAU (Translation initiation factor OS=Rheum australe PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-14
Identity = 50/93 (53.76%), Postives = 57/93 (61.29%), Query Frame = 1

Query: 3   KKVMNEADDEKYKLCLRR-------------------TRRNRTKHLCHVRGNMHKKVRIA 62
           K+  NEADDEK +L  +                    T  + TK LCH+RG MHKKV IA
Sbjct: 13  KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDNTKRLCHIRGKMHKKVWIA 72

Query: 63  AQGIIFSGLQDYQDDKADMILKYMPDEARLSKA 77
           A  II  GL+DYQDDKAD+ILKYMPDEARL KA
Sbjct: 73  AGDIILVGLRDYQDDKADVILKYMPDEARLLKA 105

BLAST of Cp4.1LG15g07280 vs. TrEMBL
Match: A0A140GXY4_9FABA (Eukaryotic translation initiation factor 1A (Fragment) OS=Aeschynomene pfundii GN=eIF-1A PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.1e-14
Identity = 52/93 (55.91%), Postives = 56/93 (60.22%), Query Frame = 1

Query: 3   KKVMNEADDEK-----------YKLCLRRTRRNR--------TKHLCHVRGNMHKKVRIA 62
           K+  NEADDEK           Y   LR     R        TK LCH+RG MHKKV IA
Sbjct: 8   KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIA 67

Query: 63  AQGIIFSGLQDYQDDKADMILKYMPDEARLSKA 77
           A  II  GL+DYQDDKAD+ILKYMPDEARL KA
Sbjct: 68  AGDIILVGLRDYQDDKADVILKYMPDEARLLKA 100

BLAST of Cp4.1LG15g07280 vs. TAIR10
Match: AT2G04520.1 (AT2G04520.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 82.0 bits (201), Expect = 1.8e-16
Identity = 50/93 (53.76%), Postives = 55/93 (59.14%), Query Frame = 1

Query: 3   KKVMNEADDEK-----------YKLCLRRTRRNR--------TKHLCHVRGNMHKKVRIA 62
           K+  NEADDEK           Y   LR     R        TK LCH+RG MHKKV IA
Sbjct: 13  KRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIA 72

Query: 63  AQGIIFSGLQDYQDDKADMILKYMPDEARLSKA 77
           A  I+  GL+DYQDDKAD+ILKYM DEARL KA
Sbjct: 73  AGDIVLVGLRDYQDDKADVILKYMSDEARLLKA 105

BLAST of Cp4.1LG15g07280 vs. TAIR10
Match: AT5G35680.3 (AT5G35680.3 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 80.5 bits (197), Expect = 5.1e-16
Identity = 50/93 (53.76%), Postives = 54/93 (58.06%), Query Frame = 1

Query: 3   KKVMNEADDEK-----------YKLCLRRTRRNR--------TKHLCHVRGNMHKKVRIA 62
           K+  NEADDEK           Y   LR     R         K LCH+RG MHKKV IA
Sbjct: 13  KRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIRGKMHKKVWIA 72

Query: 63  AQGIIFSGLQDYQDDKADMILKYMPDEARLSKA 77
           A  II  GL+DYQDDKAD+ILKYM DEARL KA
Sbjct: 73  AGDIILVGLRDYQDDKADVILKYMSDEARLLKA 105

BLAST of Cp4.1LG15g07280 vs. NCBI nr
Match: gi|823147456|ref|XP_012473639.1| (PREDICTED: eukaryotic translation initiation factor 1A-like [Gossypium raimondii])

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-14
Identity = 51/93 (54.84%), Postives = 58/93 (62.37%), Query Frame = 1

Query: 3   KKVMNEADDEKYKLCLRRTRR-------------------NRTKHLCHVRGNMHKKVRIA 62
           K+  NEADDEK +L L+   +                   + TK LCHVRG MHKKV IA
Sbjct: 13  KRGKNEADDEKRELVLKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHVRGKMHKKVWIA 72

Query: 63  AQGIIFSGLQDYQDDKADMILKYMPDEARLSKA 77
           A  II  GL+DYQDDKAD+ILKYMPDEARL KA
Sbjct: 73  AGDIILVGLRDYQDDKADVILKYMPDEARLLKA 105

BLAST of Cp4.1LG15g07280 vs. NCBI nr
Match: gi|388501094|gb|AFK38613.1| (unknown [Medicago truncatula])

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-14
Identity = 53/95 (55.79%), Postives = 57/95 (60.00%), Query Frame = 1

Query: 3   KKVMNEADDEK-----------YKLCLRRTRRNR--------TKHLCHVRGNMHKKVRIA 62
           K+  NEADDEK           Y   LR     R        TK LCH+RG MHKKV IA
Sbjct: 13  KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIA 72

Query: 63  AQGIIFSGLQDYQDDKADMILKYMPDEARLSKALS 79
           A  II  GL+DYQDDKAD+ILKYMPDEARL KA S
Sbjct: 73  AGDIILVGLRDYQDDKADVILKYMPDEARLLKAYS 107

BLAST of Cp4.1LG15g07280 vs. NCBI nr
Match: gi|922333446|ref|XP_013444714.1| (eukaryotic translation initiation factor 1A-like protein [Medicago truncatula])

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-14
Identity = 53/95 (55.79%), Postives = 57/95 (60.00%), Query Frame = 1

Query: 3   KKVMNEADDEK-----------YKLCLRRTRRNR--------TKHLCHVRGNMHKKVRIA 62
           K+  NEADDEK           Y   LR     R        TK LCH+RG MHKKV IA
Sbjct: 13  KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIA 72

Query: 63  AQGIIFSGLQDYQDDKADMILKYMPDEARLSKALS 79
           A  II  GL+DYQDDKAD+ILKYMPDEARL KA S
Sbjct: 73  AGDIILVGLRDYQDDKADVILKYMPDEARLLKAYS 107

BLAST of Cp4.1LG15g07280 vs. NCBI nr
Match: gi|197312901|gb|ACH63231.1| (translation initiation factor [Rheum australe])

HSP 1 Score: 86.3 bits (212), Expect = 2.6e-14
Identity = 50/93 (53.76%), Postives = 57/93 (61.29%), Query Frame = 1

Query: 3   KKVMNEADDEKYKLCLRR-------------------TRRNRTKHLCHVRGNMHKKVRIA 62
           K+  NEADDEK +L  +                    T  + TK LCH+RG MHKKV IA
Sbjct: 13  KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDNTKRLCHIRGKMHKKVWIA 72

Query: 63  AQGIIFSGLQDYQDDKADMILKYMPDEARLSKA 77
           A  II  GL+DYQDDKAD+ILKYMPDEARL KA
Sbjct: 73  AGDIILVGLRDYQDDKADVILKYMPDEARLLKA 105

BLAST of Cp4.1LG15g07280 vs. NCBI nr
Match: gi|225454422|ref|XP_002279938.1| (PREDICTED: eukaryotic translation initiation factor 1A [Vitis vinifera])

HSP 1 Score: 85.5 bits (210), Expect = 4.5e-14
Identity = 52/93 (55.91%), Postives = 56/93 (60.22%), Query Frame = 1

Query: 3   KKVMNEADDEK-----------YKLCLRRTRRNR--------TKHLCHVRGNMHKKVRIA 62
           K+  NEADDEK           Y   LR     R        TK LCH+RG MHKKV IA
Sbjct: 13  KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIA 72

Query: 63  AQGIIFSGLQDYQDDKADMILKYMPDEARLSKA 77
           A  II  GL+DYQDDKAD+ILKYMPDEARL KA
Sbjct: 73  AGDIILVGLRDYQDDKADVILKYMPDEARLLKA 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
IF1A_ONOVI5.3e-1553.76Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2[more]
IF1A_WHEAT1.2e-1449.46Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2[more]
IF1AX_HUMAN8.8e-1062.00Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EI... [more]
IF1AX_MOUSE8.8e-1062.00Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Ei... [more]
IF1AX_PONAB8.8e-1062.00Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EI... [more]
Match NameE-valueIdentityDescription
A0A0D2MUE8_GOSRA1.1e-1454.84Uncharacterized protein OS=Gossypium raimondii GN=B456_004G061900 PE=3 SV=1[more]
G7ZYQ6_MEDTR1.4e-1455.79Eukaryotic translation initiation factor 1A OS=Medicago truncatula GN=MTR_8g0281... [more]
I3SEC1_MEDTR1.4e-1455.79Uncharacterized protein OS=Medicago truncatula PE=2 SV=1[more]
B5M1Y2_RHEAU1.8e-1453.76Translation initiation factor OS=Rheum australe PE=2 SV=1[more]
A0A140GXY4_9FABA3.1e-1455.91Eukaryotic translation initiation factor 1A (Fragment) OS=Aeschynomene pfundii G... [more]
Match NameE-valueIdentityDescription
AT2G04520.11.8e-1653.76 Nucleic acid-binding, OB-fold-like protein[more]
AT5G35680.35.1e-1653.76 Nucleic acid-binding, OB-fold-like protein[more]
Match NameE-valueIdentityDescription
gi|823147456|ref|XP_012473639.1|1.5e-1454.84PREDICTED: eukaryotic translation initiation factor 1A-like [Gossypium raimondii... [more]
gi|388501094|gb|AFK38613.1|2.0e-1455.79unknown [Medicago truncatula][more]
gi|922333446|ref|XP_013444714.1|2.0e-1455.79eukaryotic translation initiation factor 1A-like protein [Medicago truncatula][more]
gi|197312901|gb|ACH63231.1|2.6e-1453.76translation initiation factor [Rheum australe][more]
gi|225454422|ref|XP_002279938.1|4.5e-1455.91PREDICTED: eukaryotic translation initiation factor 1A [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003743translation initiation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR006196RNA-binding_domain_S1_IF1
IPR001253TIF_eIF-1A
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006413 translational initiation
cellular_component GO:0005840 ribosome
cellular_component GO:0005829 cytosol
cellular_component GO:0005575 cellular_component
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g07280.1Cp4.1LG15g07280.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001253Translation initiation factor 1A (eIF-1A)PRODOMPD005579coord: 24..75
score: 7.0
IPR001253Translation initiation factor 1A (eIF-1A)PANTHERPTHR21668EIF-1Acoord: 26..76
score: 4.9
IPR006196RNA-binding domain, S1, IF1 typePROFILEPS50832S1_IF1_TYPEcoord: 29..67
score: 11
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 25..75
score: 2.1
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 24..75
score: 1.
NoneNo IPR availablePANTHERPTHR21668:SF5NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN-RELATEDcoord: 26..76
score: 4.9

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG15g07280Cp4.1LG16g04160Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG15g07280Cp4.1LG04g03890Cucurbita pepo (Zucchini)cpecpeB267
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g07280Silver-seed gourdcarcpeB0484
Cp4.1LG15g07280Silver-seed gourdcarcpeB1481
Cp4.1LG15g07280Cucumber (Chinese Long) v3cpecucB0290
Cp4.1LG15g07280Wax gourdcpewgoB0336
Cp4.1LG15g07280Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g07280Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g07280Wild cucumber (PI 183967)cpecpiB237
Cp4.1LG15g07280Cucumber (Chinese Long) v2cpecuB233
Cp4.1LG15g07280Bottle gourd (USVL1VR-Ls)cpelsiB194
Cp4.1LG15g07280Melon (DHL92) v3.5.1cpemeB214
Cp4.1LG15g07280Cucumber (Gy14) v2cgybcpeB187
Cp4.1LG15g07280Silver-seed gourdcarcpeB0281