CmoCh11G018680 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G018680
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Eukaryotic translation initiation factor 1A
Location	Cmo_Chr11 : 12988935 .. 12989372 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAAGAACAAGGGAAAGGGAGGTAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGATGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAAGAATATGCTCAAGTGCTCCGAATGCTAGGTAATGGTCGGTGTGAAGCGATGTGTATCGACGGGACTAAACGTCTTTGTCATATTCGGGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATCATACTCGTTGGTCTTCGTGACTATCAAGACGACAAAGCTGACGTGATTCTCAAATACATGCCTGATGAAGCTAGGCTTTTGAAAGCTTATGGTGAGCTACCTGAGAATACACGTCTTAATGAGGGTATTGTTGGGGGTATGGACGATGACGATGAAGGTGGTGGTGATGCTTATATCGAGTTTGAGGACGAAGATATTGATAGGATCTAG

mRNA sequence

ATGCCAAAGAACAAGGGAAAGGGAGGTAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGATGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAAGAATATGCTCAAGTGCTCCGAATGCTAGGTAATGGTCGGTGTGAAGCGATGTGTATCGACGGGACTAAACGTCTTTGTCATATTCGGGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATCATACTCGTTGGTCTTCGTGACTATCAAGACGACAAAGCTGACGTGATTCTCAAATACATGCCTGATGAAGCTAGGCTTTTGAAAGCTTATGGTGAGCTACCTGAGAATACACGTCTTAATGAGGGTATTGTTGGGGGTATGGACGATGACGATGAAGGTGGTGGTGATGCTTATATCGAGTTTGAGGACGAAGATATTGATAGGATCTAG

Coding sequence (CDS)

ATGCCAAAGAACAAGGGAAAGGGAGGTAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGATGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAAGAATATGCTCAAGTGCTCCGAATGCTAGGTAATGGTCGGTGTGAAGCGATGTGTATCGACGGGACTAAACGTCTTTGTCATATTCGGGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATCATACTCGTTGGTCTTCGTGACTATCAAGACGACAAAGCTGACGTGATTCTCAAATACATGCCTGATGAAGCTAGGCTTTTGAAAGCTTATGGTGAGCTACCTGAGAATACACGTCTTAATGAGGGTATTGTTGGGGGTATGGACGATGACGATGAAGGTGGTGGTGATGCTTATATCGAGTTTGAGGACGAAGATATTGATAGGATCTAG

Homology

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BLAST of CmoCh11G018680 vs. Swiss-Prot
Match: IF1A_ONOVI (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 257.7 bits (657), Expect = 7.7e-68
Identity = 131/146 (89.73%), Postives = 138/146 (94.52%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGI- 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP+NTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIG 120

Query: 121 VGGMDDDDEGGGDAYIEFEDEDIDRI 146
            GG+D++ +   D YIEFEDEDID+I
Sbjct: 121 AGGLDEEMDTAND-YIEFEDEDIDKI 145

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BLAST of CmoCh11G018680 vs. Swiss-Prot
Match: IF1A_WHEAT (Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 7.9e-65
Identity = 124/146 (84.93%), Postives = 135/146 (92.47%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP+  RLNEG+ 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGV- 120

Query: 121 GGMDDDDEGGGDA-YIEFEDEDIDRI 146
             +D  +EG GD+ YI+FEDEDID+I
Sbjct: 121 -DVDGPEEGEGDSDYIQFEDEDIDKI 144

[Close]

BLAST of CmoCh11G018680 vs. Swiss-Prot
Match: IF1AX_PONAB (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 204.1 bits (518), Expect = 1.0e-51
Identity = 108/145 (74.48%), Postives = 118/145 (81.38%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
            G  DDDE   D  I  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

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BLAST of CmoCh11G018680 vs. Swiss-Prot
Match: IF1AX_MOUSE (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 204.1 bits (518), Expect = 1.0e-51
Identity = 108/145 (74.48%), Postives = 118/145 (81.38%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
            G  DDDE   D  I  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

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BLAST of CmoCh11G018680 vs. Swiss-Prot
Match: IF1AX_HUMAN (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 204.1 bits (518), Expect = 1.0e-51
Identity = 108/145 (74.48%), Postives = 118/145 (81.38%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
            G  DDDE   D  I  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

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BLAST of CmoCh11G018680 vs. TrEMBL
Match: A0A0A0K1Y5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037660 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.1e-76
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
           GGMDDDDEGGGDAYIEFEDEDID+I
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145

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BLAST of CmoCh11G018680 vs. TrEMBL
Match: A5BQH0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01500 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.2e-73
Identity = 138/145 (95.17%), Postives = 142/145 (97.93%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
           GG+D++DEG GD YIEFEDEDID+I
Sbjct: 121 GGLDEEDEGAGDDYIEFEDEDIDKI 145

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BLAST of CmoCh11G018680 vs. TrEMBL
Match: A0A059CWY1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C04245 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 7.2e-73
Identity = 138/145 (95.17%), Postives = 142/145 (97.93%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
           GG+D++DEG GD YIEFEDEDID+I
Sbjct: 121 GGLDEEDEGPGDDYIEFEDEDIDKI 145

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BLAST of CmoCh11G018680 vs. TrEMBL
Match: A9PCD3_POPTR (Translation initiation factor eIF-1A family protein OS=Populus trichocarpa GN=POPTR_0014s15910g PE=2 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.2e-72
Identity = 136/145 (93.79%), Postives = 142/145 (97.93%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
           GG+D++D+G GD YIEFEDEDID+I
Sbjct: 121 GGLDEEDDGAGDDYIEFEDEDIDKI 145

[Close]

BLAST of CmoCh11G018680 vs. TrEMBL
Match: A0A067KF11_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13783 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.6e-72
Identity = 135/145 (93.10%), Postives = 142/145 (97.93%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
           GG+D++D+G GD Y+EFEDEDID+I
Sbjct: 121 GGLDEEDDGAGDDYVEFEDEDIDKI 145

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BLAST of CmoCh11G018680 vs. TAIR10
Match: AT2G04520.1 (AT2G04520.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 273.1 bits (697), Expect = 1.0e-73
Identity = 133/145 (91.72%), Postives = 139/145 (95.86%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
           G ++DDD+   D Y+EFEDEDIDRI
Sbjct: 121 GDLEDDDDNNDDDYVEFEDEDIDRI 145

[Close]

BLAST of CmoCh11G018680 vs. TAIR10
Match: AT5G35680.3 (AT5G35680.3 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 247.7 bits (631), Expect = 4.5e-66
Identity = 120/128 (93.75%), Postives = 124/128 (96.88%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDE 129
           G +DDDD+
Sbjct: 121 GDLDDDDD 128

[Close]

BLAST of CmoCh11G018680 vs. NCBI nr
Match: gi|449453559|ref|XP_004144524.1| (PREDICTED: eukaryotic translation initiation factor 1A [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 4.5e-76
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
           GGMDDDDEGGGDAYIEFEDEDID+I
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of CmoCh11G018680 vs. NCBI nr
Match: gi|470136575|ref|XP_004304062.1| (PREDICTED: eukaryotic translation initiation factor 1A [Fragaria vesca subsp. vesca])

HSP 1 Score: 282.3 bits (721), Expect = 4.7e-73
Identity = 138/145 (95.17%), Postives = 142/145 (97.93%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIT 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
           GG+D++DE GGD YIEFEDEDID+I
Sbjct: 121 GGLDEEDEAGGDEYIEFEDEDIDKI 145

[Close]

BLAST of CmoCh11G018680 vs. NCBI nr
Match: gi|225454422|ref|XP_002279938.1| (PREDICTED: eukaryotic translation initiation factor 1A [Vitis vinifera])

HSP 1 Score: 282.0 bits (720), Expect = 6.1e-73
Identity = 138/145 (95.17%), Postives = 142/145 (97.93%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
           GG+D++DEG GD YIEFEDEDID+I
Sbjct: 121 GGLDEEDEGAGDDYIEFEDEDIDKI 145

[Close]

BLAST of CmoCh11G018680 vs. NCBI nr
Match: gi|659115631|ref|XP_008457652.1| (PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo])

HSP 1 Score: 281.6 bits (719), Expect = 7.9e-73
Identity = 137/145 (94.48%), Postives = 143/145 (98.62%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE+TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
           GG+DD+D+GGGD Y+EFEDEDID+I
Sbjct: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 145

[Close]

BLAST of CmoCh11G018680 vs. NCBI nr
Match: gi|702307048|ref|XP_010050042.1| (PREDICTED: eukaryotic translation initiation factor 1A [Eucalyptus grandis])

HSP 1 Score: 281.2 bits (718), Expect = 1.0e-72
Identity = 138/145 (95.17%), Postives = 142/145 (97.93%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 146
           GG+D++DEG GD YIEFEDEDID+I
Sbjct: 121 GGLDEEDEGPGDDYIEFEDEDIDKI 145

The following BLAST results are available for this feature:

BLAST of CmoCh11G018680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IF1A_ONOVI	7.7e-68	89.73	Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2	[more]
IF1A_WHEAT	7.9e-65	84.93	Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2	[more]
IF1AX_PONAB	1.0e-51	74.48	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EI...	[more]
IF1AX_MOUSE	1.0e-51	74.48	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Ei...	[more]
IF1AX_HUMAN	1.0e-51	74.48	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EI...	[more]

BLAST of CmoCh11G018680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1Y5_CUCSA	3.1e-76	99.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037660 PE=3 SV=1	[more]
A5BQH0_VITVI	4.2e-73	95.17	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01500 PE=3 SV=...	[more]
A0A059CWY1_EUCGR	7.2e-73	95.17	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C04245 PE=3 SV=1	[more]
A9PCD3_POPTR	1.2e-72	93.79	Translation initiation factor eIF-1A family protein OS=Populus trichocarpa GN=PO...	[more]
A0A067KF11_JATCU	1.6e-72	93.10	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13783 PE=3 SV=1	[more]

BLAST of CmoCh11G018680 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04520.1	1.0e-73	91.72	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.3	4.5e-66	93.75	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of CmoCh11G018680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453559\|ref\|XP_004144524.1\|	4.5e-76	99.31	PREDICTED: eukaryotic translation initiation factor 1A [Cucumis sativus]	[more]
gi\|470136575\|ref\|XP_004304062.1\|	4.7e-73	95.17	PREDICTED: eukaryotic translation initiation factor 1A [Fragaria vesca subsp. ve...	[more]
gi\|225454422\|ref\|XP_002279938.1\|	6.1e-73	95.17	PREDICTED: eukaryotic translation initiation factor 1A [Vitis vinifera]	[more]
gi\|659115631\|ref\|XP_008457652.1\|	7.9e-73	94.48	PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo]	[more]
gi\|702307048\|ref\|XP_010050042.1\|	1.0e-72	95.17	PREDICTED: eukaryotic translation initiation factor 1A [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001253	TIF_eIF-1A
IPR006196	RNA-binding_domain_S1_IF1
IPR012340	NA-bd_OB-fold
IPR018104	TIF_eIF-1A_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003743	translation initiation factor activity
GO:0003723	RNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006413	translational initiation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G018680.1	CmoCh11G018680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001253	Translation initiation factor 1A (eIF-1A)	PRODOM	PD005579		coord: 53..109 score: 3.0
IPR001253	Translation initiation factor 1A (eIF-1A)	HAMAP	MF_00216	aIF_1A	coord: 16..110 score: 18
IPR001253	Translation initiation factor 1A (eIF-1A)	PANTHER	PTHR21668	EIF-1A	coord: 2..145 score: 1.5E
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 28..110 score: 7.0
IPR001253	Translation initiation factor 1A (eIF-1A)	TIGRFAMs	TIGR00523	TIGR00523	coord: 14..110 score: 8.1
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 32..93 score: 1.6
IPR006196	RNA-binding domain, S1, IF1 type	PROFILE	PS50832	S1_IF1_TYPE	coord: 22..96 score: 31
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 2..143 score: 8.7
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 2..143 score: 3.71
IPR018104	Translation initiation factor 1A (eIF-1A), conserved site	PROSITE	PS01262	IF1A	coord: 41..63 scor
None	No IPR available	PANTHER	PTHR21668:SF5	NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN-RELATED	coord: 2..145 score: 1.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G018680	Cucsa.181120	Cucumber (Gy14) v1	cgycmoB0515
CmoCh11G018680	CmaCh11G017930	Cucurbita maxima (Rimu)	cmacmoB113
CmoCh11G018680	CmaCh20G005650	Cucurbita maxima (Rimu)	cmacmoB540
CmoCh11G018680	Cla015645	Watermelon (97103) v1	cmowmB117
CmoCh11G018680	Csa7G037660	Cucumber (Chinese Long) v2	cmocuB132
CmoCh11G018680	MELO3C018872	Melon (DHL92) v3.5.1	cmomeB090
CmoCh11G018680	ClCG02G002400	Watermelon (Charleston Gray)	cmowcgB094
CmoCh11G018680	CSPI07G03150	Wild cucumber (PI 183967)	cmocpiB131
CmoCh11G018680	Lsi11G013910	Bottle gourd (USVL1VR-Ls)	cmolsiB080
CmoCh11G018680	Cp4.1LG15g07280	Cucurbita pepo (Zucchini)	cmocpeB093
CmoCh11G018680	Cp4.1LG16g04160	Cucurbita pepo (Zucchini)	cmocpeB100
CmoCh11G018680	Cp4.1LG04g03890	Cucurbita pepo (Zucchini)	cmocpeB126
CmoCh11G018680	MELO3C018872.2	Melon (DHL92) v3.6.1	cmomedB096
CmoCh11G018680	CsaV3_7G003030	Cucumber (Chinese Long) v3	cmocucB0155
CmoCh11G018680	Cla97C02G028850	Watermelon (97103) v2	cmowmbB094
CmoCh11G018680	Bhi05G001242	Wax gourd	cmowgoB0116
CmoCh11G018680	CsGy7G002820	Cucumber (Gy14) v2	cgybcmoB877

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh11G018680	CmoCh20G006640	Cucurbita moschata (Rifu)	cmocmoB117

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G018680	Cucumber (Gy14) v2	cgybcmoB151
CmoCh11G018680	Silver-seed gourd	carcmoB0276
CmoCh11G018680	Silver-seed gourd	carcmoB1428
CmoCh11G018680	Cucumber (Chinese Long) v3	cmocucB0114
CmoCh11G018680	Wax gourd	cmowgoB0126
CmoCh11G018680	Cucurbita moschata (Rifu)	cmocmoB108
CmoCh11G018680	Cucurbita maxima (Rimu)	cmacmoB492
CmoCh11G018680	Wild cucumber (PI 183967)	cmocpiB103
CmoCh11G018680	Cucumber (Chinese Long) v2	cmocuB101
CmoCh11G018680	Bottle gourd (USVL1VR-Ls)	cmolsiB074