Cla015645 (gene) Watermelon (97103) v1

Overview
NameCla015645
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionEukaryotic translation initiation factor 1A (AHRD V1 **** D9I355_LEYCH); contains Interpro domain(s) IPR001253 Translation initiation factor 1A (eIF-1A)
LocationChr2 : 2317174 .. 2318021 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGGAGTGATTCTCACTCTTAAACCTCCTTTTTATTCCGTCAAAATCAATTTTGATGATATGGAAATTGCATTCAAAAGTGTAAAATTAAATATTATATTAATTTTTAAGAAAGTTGAGAGAAAATGATCTGTTGTGCTAGTTAAACCCCACGTGATCATATTTGCTGATTTGGTTGGTGGTTTTGTGCATACATGCTCATGCCCAAGTGTAGTCATGATAACTCATTAGTGTTGAACGGATCCTTTCCCCTTTTCGGATAATCTGTTTTGATAATTCATGATTAATTTAGATTTTGCTAGTGATCTTTTTTGCAAACACACTTTTACTTTCTAGCATAGCTTGTGAAGCTATGTTTCTGGTGGCTAATTTTCCATCATAATACTGATAGTATAATCTGCGATAATGCCAAAGAACAAGGGAAAGGGGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGACGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGATTAAACGTGTCTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG

mRNA sequence

ATGTTGGGAGTGATTCTCACTCTTAAACCTCCTTTTTATTCCGTCAAAATCAATTTTGATGATATGGAAATTGCATTCAAAAGTCTTGTGAAGCTATGTTTCTGGTGGCTAATTTTCCATCATAATACTGATAGTATAATCTGCGATAATGCCAAAGAACAAGGGAAAGGGGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGACGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGATTAAACGTGTCTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG

Coding sequence (CDS)

ATGTTGGGAGTGATTCTCACTCTTAAACCTCCTTTTTATTCCGTCAAAATCAATTTTGATGATATGGAAATTGCATTCAAAAGTCTTGTGAAGCTATGTTTCTGGTGGCTAATTTTCCATCATAATACTGATAGTATAATCTGCGATAATGCCAAAGAACAAGGGAAAGGGGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGACGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGATTAAACGTGTCTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG

Protein sequence

MLGVILTLKPPFYSVKINFDDMEIAFKSLVKLCFWWLIFHHNTDSIICDNAKEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGGMDDDDDEGGGDAYIEFEDEDIDKI
Homology
[Close]
BLAST of Cla015645 vs. Swiss-Prot
Match: IF1A_ONOVI (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-64
Identity = 123/145 (84.83%), Postives = 129/145 (88.97%), Query Frame = 1 

Query: 52  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 111
           K +GKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 112 GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGI-VG 171
           GKMHKKVWIAAGDIILVGL DYQDDKADVILK M DEARLLKAY ELP+NTRLNEGI  G
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIGAG 122

Query: 172 GMDDDDDEGGGDAYIEFEDEDIDKI 196
           G+D++ D    + YIEFEDEDIDKI
Sbjct: 123 GLDEEMDT--ANDYIEFEDEDIDKI 145

[Close]
BLAST of Cla015645 vs. Swiss-Prot
Match: IF1A_WHEAT (Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 240.0 bits (611), Expect = 2.2e-62
Identity = 117/145 (80.69%), Postives = 127/145 (87.59%), Query Frame = 1 

Query: 52  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 111
           K +GKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIR 62

Query: 112 GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 171
           GKMHKKVWIAAGDI+LVGL DYQDDKADVILKYM+DEARLLKAY ELP+  RLNEG+   
Sbjct: 63  GKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGV--- 122

Query: 172 MDDDDDEGGGDA-YIEFEDEDIDKI 196
             D  +EG GD+ YI+FEDEDIDKI
Sbjct: 123 DVDGPEEGEGDSDYIQFEDEDIDKI 144

[Close]
BLAST of Cla015645 vs. Swiss-Prot
Match: IF1AX_MOUSE (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-50
Identity = 100/144 (69.44%), Postives = 113/144 (78.47%), Query Frame = 1 

Query: 52  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 111
           K +GKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG+KR+CHIR
Sbjct: 3   KNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIR 62

Query: 112 GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 171
           GK+ KKVWI   DIILVGL DYQD+KADVILKY +DEAR LKAY ELPE+ ++NE    G
Sbjct: 63  GKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFG 122

Query: 172 MDDDDDEGGGDAYIEFEDEDIDKI 196
             DDD+    D  I  +DEDID I
Sbjct: 123 PGDDDEIQFDD--IGDDDEDIDDI 144

[Close]
BLAST of Cla015645 vs. Swiss-Prot
Match: IF1AX_HUMAN (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-50
Identity = 100/144 (69.44%), Postives = 113/144 (78.47%), Query Frame = 1 

Query: 52  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 111
           K +GKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG+KR+CHIR
Sbjct: 3   KNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIR 62

Query: 112 GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 171
           GK+ KKVWI   DIILVGL DYQD+KADVILKY +DEAR LKAY ELPE+ ++NE    G
Sbjct: 63  GKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFG 122

Query: 172 MDDDDDEGGGDAYIEFEDEDIDKI 196
             DDD+    D  I  +DEDID I
Sbjct: 123 PGDDDEIQFDD--IGDDDEDIDDI 144

[Close]
BLAST of Cla015645 vs. Swiss-Prot
Match: IF1AX_PONAB (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-50
Identity = 100/144 (69.44%), Postives = 113/144 (78.47%), Query Frame = 1 

Query: 52  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 111
           K +GKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG+KR+CHIR
Sbjct: 3   KNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIR 62

Query: 112 GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 171
           GK+ KKVWI   DIILVGL DYQD+KADVILKY +DEAR LKAY ELPE+ ++NE    G
Sbjct: 63  GKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFG 122

Query: 172 MDDDDDEGGGDAYIEFEDEDIDKI 196
             DDD+    D  I  +DEDID I
Sbjct: 123 PGDDDEIQFDD--IGDDDEDIDDI 144

[Close]
BLAST of Cla015645 vs. TrEMBL
Match: A0A0A0K1Y5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037660 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 6.3e-72
Identity = 136/144 (94.44%), Postives = 138/144 (95.83%), Query Frame = 1 

Query: 52  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 111
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 112 GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 171
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIVGG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGG 122

Query: 172 MDDDDDEGGGDAYIEFEDEDIDKI 196
           M DDDDEGGGDAYIEFEDEDIDKI
Sbjct: 123 M-DDDDEGGGDAYIEFEDEDIDKI 145

[Close]
BLAST of Cla015645 vs. TrEMBL
Match: V4MNQ4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10005086mg PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 6.5e-69
Identity = 128/144 (88.89%), Postives = 136/144 (94.44%), Query Frame = 1 

Query: 52  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 111
           K +GKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDG+KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGVKRLCHIR 62

Query: 112 GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 171
           GKMHKKVWIAAGDI+LVGL DYQDDKADVILKYMSDEARLLKAY ELPENTRLNEGIVG 
Sbjct: 63  GKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGD 122

Query: 172 MDDDDDEGGGDAYIEFEDEDIDKI 196
           +D+DDD  G D YIEFEDEDID+I
Sbjct: 123 LDEDDDNAGDD-YIEFEDEDIDRI 145

[Close]
BLAST of Cla015645 vs. TrEMBL
Match: G7ZYQ6_MEDTR (Eukaryotic translation initiation factor 1A OS=Medicago truncatula GN=MTR_8g028180 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 8.5e-69
Identity = 129/144 (89.58%), Postives = 135/144 (93.75%), Query Frame = 1 

Query: 52  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 111
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 112 GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 171
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAYSELP++ RLNEGI GG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPDSVRLNEGIGGG 122

Query: 172 MDDDDDEGGGDAYIEFEDEDIDKI 196
           +D DDDEG G+ YIEFEDEDIDKI
Sbjct: 123 IDGDDDEGDGNDYIEFEDEDIDKI 146

[Close]
BLAST of Cla015645 vs. TrEMBL
Match: A5BQH0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01500 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 8.5e-69
Identity = 130/144 (90.28%), Postives = 135/144 (93.75%), Query Frame = 1 

Query: 52  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 111
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 112 GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 171
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGI GG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGG 122

Query: 172 MDDDDDEGGGDAYIEFEDEDIDKI 196
           + D++DEG GD YIEFEDEDIDKI
Sbjct: 123 L-DEEDEGAGDDYIEFEDEDIDKI 145

[Close]
BLAST of Cla015645 vs. TrEMBL
Match: A9PCD3_POPTR (Translation initiation factor eIF-1A family protein OS=Populus trichocarpa GN=POPTR_0014s15910g PE=2 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 8.5e-69
Identity = 129/144 (89.58%), Postives = 135/144 (93.75%), Query Frame = 1 

Query: 52  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 111
           K +GKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 112 GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 171
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGI GG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGG 122

Query: 172 MDDDDDEGGGDAYIEFEDEDIDKI 196
           +D++DD G GD YIEFEDEDIDKI
Sbjct: 123 LDEEDD-GAGDDYIEFEDEDIDKI 145

[Close]
BLAST of Cla015645 vs. NCBI nr
Match: gi|449453559|ref|XP_004144524.1| (PREDICTED: eukaryotic translation initiation factor 1A [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 9.0e-72
Identity = 136/144 (94.44%), Postives = 138/144 (95.83%), Query Frame = 1 

Query: 52  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 111
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 112 GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 171
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIVGG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGG 122

Query: 172 MDDDDDEGGGDAYIEFEDEDIDKI 196
           M DDDDEGGGDAYIEFEDEDIDKI
Sbjct: 123 M-DDDDEGGGDAYIEFEDEDIDKI 145

[Close]
BLAST of Cla015645 vs. NCBI nr
Match: gi|658013696|ref|XP_008342155.1| (PREDICTED: eukaryotic translation initiation factor 1A [Malus domestica])

HSP 1 Score: 270.8 bits (691), Expect = 1.9e-69
Identity = 130/144 (90.28%), Postives = 135/144 (93.75%), Query Frame = 1 

Query: 52  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 111
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 112 GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 171
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGI GG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGG 122

Query: 172 MDDDDDEGGGDAYIEFEDEDIDKI 196
           +DD++ EGG D YIEFEDEDIDKI
Sbjct: 123 IDDEETEGGVDDYIEFEDEDIDKI 146

[Close]
BLAST of Cla015645 vs. NCBI nr
Match: gi|659115631|ref|XP_008457652.1| (PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo])

HSP 1 Score: 269.2 bits (687), Expect = 5.5e-69
Identity = 130/144 (90.28%), Postives = 136/144 (94.44%), Query Frame = 1 

Query: 52  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 111
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 112 GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 171
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPE+TRLNEGI GG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGG 122

Query: 172 MDDDDDEGGGDAYIEFEDEDIDKI 196
           +DD+DD GGGD Y+EFEDEDIDKI
Sbjct: 123 IDDEDD-GGGDDYLEFEDEDIDKI 145

[Close]
BLAST of Cla015645 vs. NCBI nr
Match: gi|567143666|ref|XP_006395950.1| (hypothetical protein EUTSA_v10005086mg [Eutrema salsugineum])

HSP 1 Score: 268.5 bits (685), Expect = 9.3e-69
Identity = 128/144 (88.89%), Postives = 136/144 (94.44%), Query Frame = 1 

Query: 52  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 111
           K +GKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDG+KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGVKRLCHIR 62

Query: 112 GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 171
           GKMHKKVWIAAGDI+LVGL DYQDDKADVILKYMSDEARLLKAY ELPENTRLNEGIVG 
Sbjct: 63  GKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGD 122

Query: 172 MDDDDDEGGGDAYIEFEDEDIDKI 196
           +D+DDD  G D YIEFEDEDID+I
Sbjct: 123 LDEDDDNAGDD-YIEFEDEDIDRI 145

[Close]
BLAST of Cla015645 vs. NCBI nr
Match: gi|470136575|ref|XP_004304062.1| (PREDICTED: eukaryotic translation initiation factor 1A [Fragaria vesca subsp. vesca])

HSP 1 Score: 268.5 bits (685), Expect = 9.3e-69
Identity = 130/144 (90.28%), Postives = 135/144 (93.75%), Query Frame = 1 

Query: 52  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 111
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 112 GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 171
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGI GG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGITGG 122

Query: 172 MDDDDDEGGGDAYIEFEDEDIDKI 196
           + D++DE GGD YIEFEDEDIDKI
Sbjct: 123 L-DEEDEAGGDEYIEFEDEDIDKI 145

The following BLAST results are available for this feature:
BLAST of Cla015645 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IF1A_ONOVI1.1e-6484.83Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2[more]
IF1A_WHEAT2.2e-6280.69Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2[more]
IF1AX_MOUSE1.1e-5069.44Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Ei... [more]
IF1AX_HUMAN1.1e-5069.44Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EI... [more]
IF1AX_PONAB1.1e-5069.44Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EI... [more]
BLAST of Cla015645 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1Y5_CUCSA6.3e-7294.44Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037660 PE=3 SV=1[more]
V4MNQ4_EUTSA6.5e-6988.89Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10005086mg PE=3 SV=1[more]
G7ZYQ6_MEDTR8.5e-6989.58Eukaryotic translation initiation factor 1A OS=Medicago truncatula GN=MTR_8g0281... [more]
A5BQH0_VITVI8.5e-6990.28Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01500 PE=3 SV=... [more]
A9PCD3_POPTR8.5e-6989.58Translation initiation factor eIF-1A family protein OS=Populus trichocarpa GN=PO... [more]
BLAST of Cla015645 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453559|ref|XP_004144524.1|9.0e-7294.44PREDICTED: eukaryotic translation initiation factor 1A [Cucumis sativus][more]
gi|658013696|ref|XP_008342155.1|1.9e-6990.28PREDICTED: eukaryotic translation initiation factor 1A [Malus domestica][more]
gi|659115631|ref|XP_008457652.1|5.5e-6990.28PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo][more]
gi|567143666|ref|XP_006395950.1|9.3e-6988.89hypothetical protein EUTSA_v10005086mg [Eutrema salsugineum][more]
gi|470136575|ref|XP_004304062.1|9.3e-6990.28PREDICTED: eukaryotic translation initiation factor 1A [Fragaria vesca subsp. ve... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001253TIF_eIF-1A
IPR006196RNA-binding_domain_S1_IF1
IPR012340NA-bd_OB-fold
IPR018104TIF_eIF-1A_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006413 translational initiation
cellular_component GO:0005840 ribosome
cellular_component GO:0005829 cytosol
cellular_component GO:0005575 cellular_component
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU53267watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla015645Cla015645.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU53267WMU53267transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001253Translation initiation factor 1A (eIF-1A)PRODOMPD005579coord: 102..158
score: 6.0
IPR001253Translation initiation factor 1A (eIF-1A)HAMAPMF_00216aIF_1Acoord: 65..159
score: 17
IPR001253Translation initiation factor 1A (eIF-1A)PANTHERPTHR21668EIF-1Acoord: 51..195
score: 2.4E
IPR001253Translation initiation factor 1A (eIF-1A)SMARTSM00652eIF1neu4coord: 77..159
score: 3.8
IPR001253Translation initiation factor 1A (eIF-1A)TIGRFAMsTIGR00523TIGR00523coord: 63..159
score: 1.3
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 81..142
score: 3.2
IPR006196RNA-binding domain, S1, IF1 typePROFILEPS50832S1_IF1_TYPEcoord: 71..145
score: 30
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 52..194
score: 1.9
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 53..191
score: 2.29
IPR018104Translation initiation factor 1A (eIF-1A), conserved sitePROSITEPS01262IF1Acoord: 90..112
scor
NoneNo IPR availablePANTHERPTHR21668:SF5NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN-RELATEDcoord: 51..195
score: 2.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla015645Cla97C02G028850Watermelon (97103) v2wmwmbB317
Cla015645Csa7G037660Cucumber (Chinese Long) v2cuwmB604
Cla015645MELO3C018872Melon (DHL92) v3.5.1mewmB241
Cla015645ClCG02G002400Watermelon (Charleston Gray)wcgwmB198
Cla015645CSPI07G03150Wild cucumber (PI 183967)cpiwmB621
Cla015645Cucsa.181120Cucumber (Gy14) v1cgywmB346
Cla015645CmaCh11G017930Cucurbita maxima (Rimu)cmawmB129
Cla015645CmaCh20G005650Cucurbita maxima (Rimu)cmawmB543
Cla015645CmoCh11G018680Cucurbita moschata (Rifu)cmowmB117
Cla015645Lsi11G013910Bottle gourd (USVL1VR-Ls)lsiwmB106
Cla015645Cp4.1LG15g07280Cucurbita pepo (Zucchini)cpewmB268
Cla015645Cp4.1LG16g04160Cucurbita pepo (Zucchini)cpewmB305
Cla015645Cp4.1LG04g03890Cucurbita pepo (Zucchini)cpewmB675
Cla015645CsGy7G002820Cucumber (Gy14) v2cgybwmB566
Cla015645MELO3C018872.2Melon (DHL92) v3.6.1medwmB233
Cla015645CsaV3_7G003030Cucumber (Chinese Long) v3cucwmB634
Cla015645Bhi05G001242Wax gourdwgowmB272
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla015645Bottle gourd (USVL1VR-Ls)lsiwmB080
Cla015645Bottle gourd (USVL1VR-Ls)lsiwmB105
Cla015645Cucumber (Gy14) v2cgybwmB146
Cla015645Cucumber (Gy14) v2cgybwmB565
Cla015645Melon (DHL92) v3.6.1medwmB109
Cla015645Silver-seed gourdcarwmB0194
Cla015645Silver-seed gourdcarwmB0334
Cla015645Silver-seed gourdcarwmB1066
Cla015645Cucumber (Chinese Long) v3cucwmB165
Cla015645Cucumber (Chinese Long) v3cucwmB633
Cla015645Watermelon (97103) v2wmwmbB333
Cla015645Wax gourdwgowmB403
Cla015645Cucurbita maxima (Rimu)cmawmB503
Cla015645Cucurbita moschata (Rifu)cmowmB496
Cla015645Melon (DHL92) v3.5.1mewmB110
Cla015645Watermelon (Charleston Gray)wcgwmB079
Cla015645Watermelon (Charleston Gray)wcgwmB215
Cla015645Cucumber (Chinese Long) v2cuwmB154
Cla015645Cucumber (Chinese Long) v2cuwmB603