CmaCh20G005650 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G005650
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Eukaryotic translation initiation factor 1A
Location	Cma_Chr20 : 2727793 .. 2728230 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGCGAGCTTGTGTTCAAGGAAGATGGTCAGGAGTATGCACAAGTTCTCAGAATGTTGGGGAACGGTCGGTGCGAGGCAATGTGCATCGACGGGTCAAAGCGTCTTTGCCATATCCGAGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTCGTTGGTCTTCGCGACTATCAGGATGATAAAGCTGATGTTATCCTCAAGTACATGCCTGATGAAGCAAGGCTATTGAAGGCATATGGGGAGCTTCCTGAGAACACCCGCCTCAATGAGGGTATCGCTGGAGGTATCGACGATGAGGATGATGGCGGGGTTGATGATTATCTGGAGTTTGAGGATGAAGATATTGATAAGATTTAG

mRNA sequence

ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGCGAGCTTGTGTTCAAGGAAGATGGTCAGGAGTATGCACAAGTTCTCAGAATGTTGGGGAACGGTCGGTGCGAGGCAATGTGCATCGACGGGTCAAAGCGTCTTTGCCATATCCGAGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTCGTTGGTCTTCGCGACTATCAGGATGATAAAGCTGATGTTATCCTCAAGTACATGCCTGATGAAGCAAGGCTATTGAAGGCATATGGGGAGCTTCCTGAGAACACCCGCCTCAATGAGGGTATCGCTGGAGGTATCGACGATGAGGATGATGGCGGGGTTGATGATTATCTGGAGTTTGAGGATGAAGATATTGATAAGATTTAG

Coding sequence (CDS)

ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGCGAGCTTGTGTTCAAGGAAGATGGTCAGGAGTATGCACAAGTTCTCAGAATGTTGGGGAACGGTCGGTGCGAGGCAATGTGCATCGACGGGTCAAAGCGTCTTTGCCATATCCGAGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTCGTTGGTCTTCGCGACTATCAGGATGATAAAGCTGATGTTATCCTCAAGTACATGCCTGATGAAGCAAGGCTATTGAAGGCATATGGGGAGCTTCCTGAGAACACCCGCCTCAATGAGGGTATCGCTGGAGGTATCGACGATGAGGATGATGGCGGGGTTGATGATTATCTGGAGTTTGAGGATGAAGATATTGATAAGATTTAG

Protein sequence

MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGGIDDEDDGGVDDYLEFEDEDIDKI

Homology

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BLAST of CmaCh20G005650 vs. Swiss-Prot
Match: IF1A_ONOVI (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-68
Identity = 133/146 (91.10%), Postives = 140/146 (95.89%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGI- 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP+NTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIG 120

Query: 121 AGGIDDEDDGGVDDYLEFEDEDIDKI 146
           AGG+D+E D   +DY+EFEDEDIDKI
Sbjct: 121 AGGLDEEMD-TANDYIEFEDEDIDKI 145

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BLAST of CmaCh20G005650 vs. Swiss-Prot
Match: IF1A_WHEAT (Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 243.8 bits (621), Expect = 1.1e-63
Identity = 122/146 (83.56%), Postives = 134/146 (91.78%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP+  RLNEG+ 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGV- 120

Query: 121 GGIDDEDDG-GVDDYLEFEDEDIDKI 146
             +D  ++G G  DY++FEDEDIDKI
Sbjct: 121 -DVDGPEEGEGDSDYIQFEDEDIDKI 144

[Close]

BLAST of CmaCh20G005650 vs. Swiss-Prot
Match: IF1AX_PONAB (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 202.6 bits (514), Expect = 2.9e-51
Identity = 106/145 (73.10%), Postives = 119/145 (82.07%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
            G  D+D+   DD +  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of CmaCh20G005650 vs. Swiss-Prot
Match: IF1AX_MOUSE (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 202.6 bits (514), Expect = 2.9e-51
Identity = 106/145 (73.10%), Postives = 119/145 (82.07%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
            G  D+D+   DD +  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of CmaCh20G005650 vs. Swiss-Prot
Match: IF1AX_HUMAN (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 202.6 bits (514), Expect = 2.9e-51
Identity = 106/145 (73.10%), Postives = 119/145 (82.07%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
            G  D+D+   DD +  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of CmaCh20G005650 vs. TrEMBL
Match: A0A061DSN8_THECC (Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_005216 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.5e-73
Identity = 139/145 (95.86%), Postives = 143/145 (98.62%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           GGID+EDDG  DDY+EFEDEDIDKI
Sbjct: 121 GGIDEEDDGAADDYIEFEDEDIDKI 145

[Close]

BLAST of CmaCh20G005650 vs. TrEMBL
Match: A9PCD3_POPTR (Translation initiation factor eIF-1A family protein OS=Populus trichocarpa GN=POPTR_0014s15910g PE=2 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 5.5e-73
Identity = 138/145 (95.17%), Postives = 143/145 (98.62%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           GG+D+EDDG  DDY+EFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYIEFEDEDIDKI 145

[Close]

BLAST of CmaCh20G005650 vs. TrEMBL
Match: A0A067KF11_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13783 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 7.2e-73
Identity = 138/145 (95.17%), Postives = 143/145 (98.62%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           GG+D+EDDG  DDY+EFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYVEFEDEDIDKI 145

[Close]

BLAST of CmaCh20G005650 vs. TrEMBL
Match: F8RW94_HEVBR (Eukaryotic translation initiation factor 1Aa OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 9.4e-73
Identity = 138/145 (95.17%), Postives = 143/145 (98.62%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE+TRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           GG+D+EDDG  DDY+EFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYIEFEDEDIDKI 145

[Close]

BLAST of CmaCh20G005650 vs. TrEMBL
Match: A0A0A0LJ19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263950 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.2e-72
Identity = 139/145 (95.86%), Postives = 143/145 (98.62%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE+TRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           GGIDDEDDG  D+Y+EFEDEDIDKI
Sbjct: 121 GGIDDEDDGAGDNYIEFEDEDIDKI 145

[Close]

BLAST of CmaCh20G005650 vs. TAIR10
Match: AT2G04520.1 (AT2G04520.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 268.9 bits (686), Expect = 1.9e-72
Identity = 131/145 (90.34%), Postives = 139/145 (95.86%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           G ++D+DD   DDY+EFEDEDID+I
Sbjct: 121 GDLEDDDDNNDDDYVEFEDEDIDRI 145

[Close]

BLAST of CmaCh20G005650 vs. TAIR10
Match: AT5G35680.3 (AT5G35680.3 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 245.0 bits (624), Expect = 2.9e-65
Identity = 119/128 (92.97%), Postives = 123/128 (96.09%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGIDDEDD 129
           G +DD+DD
Sbjct: 121 GDLDDDDD 128

[Close]

BLAST of CmaCh20G005650 vs. NCBI nr
Match: gi|659115631|ref|XP_008457652.1| (PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo])

HSP 1 Score: 285.4 bits (729), Expect = 5.5e-74
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE+TRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           GGIDDEDDGG DDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 145

[Close]

BLAST of CmaCh20G005650 vs. NCBI nr
Match: gi|590721556|ref|XP_007051647.1| (Nucleic acid-binding, OB-fold-like protein [Theobroma cacao])

HSP 1 Score: 283.5 bits (724), Expect = 2.1e-73
Identity = 139/145 (95.86%), Postives = 143/145 (98.62%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           GGID+EDDG  DDY+EFEDEDIDKI
Sbjct: 121 GGIDEEDDGAADDYIEFEDEDIDKI 145

[Close]

BLAST of CmaCh20G005650 vs. NCBI nr
Match: gi|645247435|ref|XP_008229835.1| (PREDICTED: eukaryotic translation initiation factor 1A [Prunus mume])

HSP 1 Score: 282.3 bits (721), Expect = 4.7e-73
Identity = 138/145 (95.17%), Postives = 144/145 (99.31%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           GG++DE++GG DDY+EFEDEDIDKI
Sbjct: 121 GGLEDEEEGGADDYIEFEDEDIDKI 145

[Close]

BLAST of CmaCh20G005650 vs. NCBI nr
Match: gi|224129090|ref|XP_002320498.1| (translation initiation factor eIF-1A family protein [Populus trichocarpa])

HSP 1 Score: 281.6 bits (719), Expect = 7.9e-73
Identity = 138/145 (95.17%), Postives = 143/145 (98.62%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 146
           GG+D+EDDG  DDY+EFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYIEFEDEDIDKI 145

[Close]

BLAST of CmaCh20G005650 vs. NCBI nr
Match: gi|658013696|ref|XP_008342155.1| (PREDICTED: eukaryotic translation initiation factor 1A [Malus domestica])

HSP 1 Score: 281.6 bits (719), Expect = 7.9e-73
Identity = 141/146 (96.58%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 GGIDDED-DGGVDDYLEFEDEDIDKI 146
           GGIDDE+ +GGVDDY+EFEDEDIDKI
Sbjct: 121 GGIDDEETEGGVDDYIEFEDEDIDKI 146

The following BLAST results are available for this feature:

BLAST of CmaCh20G005650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IF1A_ONOVI	1.2e-68	91.10	Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2	[more]
IF1A_WHEAT	1.1e-63	83.56	Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2	[more]
IF1AX_PONAB	2.9e-51	73.10	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EI...	[more]
IF1AX_MOUSE	2.9e-51	73.10	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Ei...	[more]
IF1AX_HUMAN	2.9e-51	73.10	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EI...	[more]

BLAST of CmaCh20G005650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061DSN8_THECC	1.5e-73	95.86	Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_005216 PE=3...	[more]
A9PCD3_POPTR	5.5e-73	95.17	Translation initiation factor eIF-1A family protein OS=Populus trichocarpa GN=PO...	[more]
A0A067KF11_JATCU	7.2e-73	95.17	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13783 PE=3 SV=1	[more]
F8RW94_HEVBR	9.4e-73	95.17	Eukaryotic translation initiation factor 1Aa OS=Hevea brasiliensis PE=2 SV=1	[more]
A0A0A0LJ19_CUCSA	1.2e-72	95.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263950 PE=3 SV=1	[more]

BLAST of CmaCh20G005650 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04520.1	1.9e-72	90.34	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.3	2.9e-65	92.97	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of CmaCh20G005650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115631\|ref\|XP_008457652.1\|	5.5e-74	97.93	PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo]	[more]
gi\|590721556\|ref\|XP_007051647.1\|	2.1e-73	95.86	Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]	[more]
gi\|645247435\|ref\|XP_008229835.1\|	4.7e-73	95.17	PREDICTED: eukaryotic translation initiation factor 1A [Prunus mume]	[more]
gi\|224129090\|ref\|XP_002320498.1\|	7.9e-73	95.17	translation initiation factor eIF-1A family protein [Populus trichocarpa]	[more]
gi\|658013696\|ref\|XP_008342155.1\|	7.9e-73	96.58	PREDICTED: eukaryotic translation initiation factor 1A [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001253	TIF_eIF-1A
IPR006196	RNA-binding_domain_S1_IF1
IPR012340	NA-bd_OB-fold
IPR018104	TIF_eIF-1A_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003743	translation initiation factor activity
GO:0003723	RNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006413	translational initiation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G005650.1	CmaCh20G005650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001253	Translation initiation factor 1A (eIF-1A)	PRODOM	PD005579		coord: 53..109 score: 7.0
IPR001253	Translation initiation factor 1A (eIF-1A)	HAMAP	MF_00216	aIF_1A	coord: 16..110 score: 18
IPR001253	Translation initiation factor 1A (eIF-1A)	PANTHER	PTHR21668	EIF-1A	coord: 2..145 score: 2.5E
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 28..110 score: 1.4
IPR001253	Translation initiation factor 1A (eIF-1A)	TIGRFAMs	TIGR00523	TIGR00523	coord: 14..110 score: 8.2
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 32..93 score: 1.5
IPR006196	RNA-binding domain, S1, IF1 type	PROFILE	PS50832	S1_IF1_TYPE	coord: 22..96 score: 31
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 2..144 score: 2.0
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 2..144 score: 4.57
IPR018104	Translation initiation factor 1A (eIF-1A), conserved site	PROSITE	PS01262	IF1A	coord: 41..63 scor
None	No IPR available	unknown	Coil	Coil	coord: 135..145 scor
None	No IPR available	PANTHER	PTHR21668:SF5	NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN-RELATED	coord: 2..145 score: 2.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G005650	Cla015645	Watermelon (97103) v1	cmawmB543
CmaCh20G005650	Csa7G037660	Cucumber (Chinese Long) v2	cmacuB569
CmaCh20G005650	MELO3C018872	Melon (DHL92) v3.5.1	cmameB513
CmaCh20G005650	ClCG02G002400	Watermelon (Charleston Gray)	cmawcgB494
CmaCh20G005650	CSPI07G03150	Wild cucumber (PI 183967)	cmacpiB576
CmaCh20G005650	CmoCh11G018680	Cucurbita moschata (Rifu)	cmacmoB540
CmaCh20G005650	CmoCh20G006640	Cucurbita moschata (Rifu)	cmacmoB552
CmaCh20G005650	Lsi11G013910	Bottle gourd (USVL1VR-Ls)	cmalsiB513
CmaCh20G005650	Cp4.1LG15g07280	Cucurbita pepo (Zucchini)	cmacpeB559
CmaCh20G005650	Cp4.1LG16g04160	Cucurbita pepo (Zucchini)	cmacpeB562
CmaCh20G005650	Cp4.1LG04g03890	Cucurbita pepo (Zucchini)	cmacpeB574
CmaCh20G005650	MELO3C018872.2	Melon (DHL92) v3.6.1	cmamedB590
CmaCh20G005650	CsaV3_7G003030	Cucumber (Chinese Long) v3	cmacucB0684
CmaCh20G005650	Cla97C02G028850	Watermelon (97103) v2	cmawmbB582
CmaCh20G005650	CsGy7G002820	Cucumber (Gy14) v2	cgybcmaB953

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh20G005650	CmaCh11G017930	Cucurbita maxima (Rimu)	cmacmaB157

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G005650	Bottle gourd (USVL1VR-Ls)	cmalsiB501
CmaCh20G005650	Cucumber (Gy14) v2	cgybcmaB217
CmaCh20G005650	Cucumber (Chinese Long) v3	cmacucB0650
CmaCh20G005650	Wild cucumber (PI 183967)	cmacpiB545