ClCG02G002400 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G002400
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Eukaryotic translation initiation factor 1A
Location	CG_Chr02 : 2438169 .. 2439117 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTTTAGTTGTGGTCATCGAGATTACTCGTTGTACTTTCTACTTTCACACCCAATCTTTATTATGCAAAAATGTTGCAGTAACCAAAACTTTAAGTTATGTTGGGAGTGATTCTCACTCTTAAACCTCCTTTTTATTCCGTCAAAATCAATTTTGATGATATGGAAATTGCATTCAAAAGTGTAAAATTAAATATTATATTAATTTTTAAGAAAGTTGAGAGAAAATGATCTGTTGTGCTAGTTAAACCCCACGTGATCATATTTGCTGATTTGGTTGGTGGTTTTGTGCATACATGCTCATGCCCAAGTGTAGTCATGATAACTCATTAGTGTTGAACGGATCCTTTCCCCTTTTCGGATAATCTGTTTTGATAATTCATGATTAATTTAGATTTTGCTAGTGATCTTTTTTGCAAACACACTTTTACTTTCTAGCATAGCTTGTGAAGCTATGTTTCTGGTGGCTAATTTTCCATCATAATACTGATAGTATAATCTGCGATAATGCCAAAGAACAAGGGAAAGGGGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGACGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGATTAAACGTGTCTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG

mRNA sequence

ATGATCTTTAGTTGTGGTCATCGAGATTACTCGTTTATAATCTGCGATAATGCCAAAGAACAAGGGAAAGGGGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGACGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGATTAAACGTGTCTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG

Coding sequence (CDS)

ATGATCTTTAGTTGTGGTCATCGAGATTACTCGTTTATAATCTGCGATAATGCCAAAGAACAAGGGAAAGGGGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGACGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGATTAAACGTGTCTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG

Protein sequence

MIFSCGHRDYSFIICDNAKEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGGMDDDDDEGGGDAYIEFEDEDIDKI

Homology

[Close]

BLAST of ClCG02G002400 vs. Swiss-Prot
Match: IF1A_ONOVI (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 8.9e-65
Identity = 123/145 (84.83%), Postives = 129/145 (88.97%), Query Frame = 1


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGI-VG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILK M DEARLLKAY ELP+NTRLNEGI  G
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIGAG 122

Query: 139 GMDDDDDEGGGDAYIEFEDEDIDKI 163
           G+D++ D    + YIEFEDEDIDKI
Sbjct: 123 GLDEEMDT--ANDYIEFEDEDIDKI 145

[Close]

BLAST of ClCG02G002400 vs. Swiss-Prot
Match: IF1A_WHEAT (Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 240.0 bits (611), Expect = 1.9e-62
Identity = 117/145 (80.69%), Postives = 127/145 (87.59%), Query Frame = 1


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDI+LVGL DYQDDKADVILKYM+DEARLLKAY ELP+  RLNEG+   
Sbjct: 63  GKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGV--- 122

Query: 139 MDDDDDEGGGDA-YIEFEDEDIDKI 163
             D  +EG GD+ YI+FEDEDIDKI
Sbjct: 123 DVDGPEEGEGDSDYIQFEDEDIDKI 144

[Close]

BLAST of ClCG02G002400 vs. Swiss-Prot
Match: IF1AX_MOUSE (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 201.1 bits (510), Expect = 9.5e-51
Identity = 100/144 (69.44%), Postives = 113/144 (78.47%), Query Frame = 1


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG+KR+CHIR
Sbjct: 3   KNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GK+ KKVWI   DIILVGL DYQD+KADVILKY +DEAR LKAY ELPE+ ++NE    G
Sbjct: 63  GKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
             DDD+    D  I  +DEDID I
Sbjct: 123 PGDDDEIQFDD--IGDDDEDIDDI 144

[Close]

BLAST of ClCG02G002400 vs. Swiss-Prot
Match: IF1AX_HUMAN (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 201.1 bits (510), Expect = 9.5e-51
Identity = 100/144 (69.44%), Postives = 113/144 (78.47%), Query Frame = 1


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG+KR+CHIR
Sbjct: 3   KNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GK+ KKVWI   DIILVGL DYQD+KADVILKY +DEAR LKAY ELPE+ ++NE    G
Sbjct: 63  GKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
             DDD+    D  I  +DEDID I
Sbjct: 123 PGDDDEIQFDD--IGDDDEDIDDI 144

[Close]

BLAST of ClCG02G002400 vs. Swiss-Prot
Match: IF1AX_PONAB (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 201.1 bits (510), Expect = 9.5e-51
Identity = 100/144 (69.44%), Postives = 113/144 (78.47%), Query Frame = 1


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG+KR+CHIR
Sbjct: 3   KNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GK+ KKVWI   DIILVGL DYQD+KADVILKY +DEAR LKAY ELPE+ ++NE    G
Sbjct: 63  GKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
             DDD+    D  I  +DEDID I
Sbjct: 123 PGDDDEIQFDD--IGDDDEDIDDI 144

[Close]

BLAST of ClCG02G002400 vs. TrEMBL
Match: A0A0A0K1Y5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037660 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 5.2e-72
Identity = 136/144 (94.44%), Postives = 138/144 (95.83%), Query Frame = 1


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIVGG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           M DDDDEGGGDAYIEFEDEDIDKI
Sbjct: 123 M-DDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of ClCG02G002400 vs. TrEMBL
Match: V4MNQ4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10005086mg PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 5.4e-69
Identity = 128/144 (88.89%), Postives = 136/144 (94.44%), Query Frame = 1


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDG+KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGVKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDI+LVGL DYQDDKADVILKYMSDEARLLKAY ELPENTRLNEGIVG 
Sbjct: 63  GKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGD 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           +D+DDD  G D YIEFEDEDID+I
Sbjct: 123 LDEDDDNAGDD-YIEFEDEDIDRI 145

[Close]

BLAST of ClCG02G002400 vs. TrEMBL
Match: G7ZYQ6_MEDTR (Eukaryotic translation initiation factor 1A OS=Medicago truncatula GN=MTR_8g028180 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 7.1e-69
Identity = 129/144 (89.58%), Postives = 135/144 (93.75%), Query Frame = 1


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAYSELP++ RLNEGI GG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPDSVRLNEGIGGG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           +D DDDEG G+ YIEFEDEDIDKI
Sbjct: 123 IDGDDDEGDGNDYIEFEDEDIDKI 146

[Close]

BLAST of ClCG02G002400 vs. TrEMBL
Match: A9PCD3_POPTR (Translation initiation factor eIF-1A family protein OS=Populus trichocarpa GN=POPTR_0014s15910g PE=2 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 7.1e-69
Identity = 129/144 (89.58%), Postives = 135/144 (93.75%), Query Frame = 1


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGI GG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           +D++DD G GD YIEFEDEDIDKI
Sbjct: 123 LDEEDD-GAGDDYIEFEDEDIDKI 145

[Close]

BLAST of ClCG02G002400 vs. TrEMBL
Match: A5BQH0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01500 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 7.1e-69
Identity = 130/144 (90.28%), Postives = 135/144 (93.75%), Query Frame = 1


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGI GG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           + D++DEG GD YIEFEDEDIDKI
Sbjct: 123 L-DEEDEGAGDDYIEFEDEDIDKI 145

[Close]

BLAST of ClCG02G002400 vs. TAIR10
Match: AT2G04520.1 (AT2G04520.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 263.8 bits (673), Expect = 6.7e-71
Identity = 126/144 (87.50%), Postives = 132/144 (91.67%), Query Frame = 1


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDI+LVGL DYQDDKADVILKYMSDEARLLKAY ELPENTRLNEGIVG 
Sbjct: 63  GKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGD 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           ++DDDD    D Y+EFEDEDID+I
Sbjct: 123 LEDDDDNNDDD-YVEFEDEDIDRI 145

[Close]

BLAST of ClCG02G002400 vs. TAIR10
Match: AT5G35680.3 (AT5G35680.3 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 245.0 bits (624), Expect = 3.2e-65
Identity = 115/126 (91.27%), Postives = 119/126 (94.44%), Query Frame = 1


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG+KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYMSDEARLLKAY ELPENTRLNEGIVG 
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGD 122

Query: 139 MDDDDD 145
           +DDDDD
Sbjct: 123 LDDDDD 128

[Close]

BLAST of ClCG02G002400 vs. NCBI nr
Match: gi|449453559|ref|XP_004144524.1| (PREDICTED: eukaryotic translation initiation factor 1A [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 7.5e-72
Identity = 136/144 (94.44%), Postives = 138/144 (95.83%), Query Frame = 1


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIVGG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           M DDDDEGGGDAYIEFEDEDIDKI
Sbjct: 123 M-DDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of ClCG02G002400 vs. NCBI nr
Match: gi|658013696|ref|XP_008342155.1| (PREDICTED: eukaryotic translation initiation factor 1A [Malus domestica])

HSP 1 Score: 270.8 bits (691), Expect = 1.6e-69
Identity = 130/144 (90.28%), Postives = 135/144 (93.75%), Query Frame = 1


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGI GG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           +DD++ EGG D YIEFEDEDIDKI
Sbjct: 123 IDDEETEGGVDDYIEFEDEDIDKI 146

[Close]

BLAST of ClCG02G002400 vs. NCBI nr
Match: gi|659115631|ref|XP_008457652.1| (PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo])

HSP 1 Score: 269.2 bits (687), Expect = 4.6e-69
Identity = 130/144 (90.28%), Postives = 136/144 (94.44%), Query Frame = 1


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPE+TRLNEGI GG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           +DD+DD GGGD Y+EFEDEDIDKI
Sbjct: 123 IDDEDD-GGGDDYLEFEDEDIDKI 145

[Close]

BLAST of ClCG02G002400 vs. NCBI nr
Match: gi|567143666|ref|XP_006395950.1| (hypothetical protein EUTSA_v10005086mg [Eutrema salsugineum])

HSP 1 Score: 268.5 bits (685), Expect = 7.8e-69
Identity = 128/144 (88.89%), Postives = 136/144 (94.44%), Query Frame = 1


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDG+KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGVKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDI+LVGL DYQDDKADVILKYMSDEARLLKAY ELPENTRLNEGIVG 
Sbjct: 63  GKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGD 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           +D+DDD  G D YIEFEDEDID+I
Sbjct: 123 LDEDDDNAGDD-YIEFEDEDIDRI 145

[Close]

BLAST of ClCG02G002400 vs. NCBI nr
Match: gi|470136575|ref|XP_004304062.1| (PREDICTED: eukaryotic translation initiation factor 1A [Fragaria vesca subsp. vesca])

HSP 1 Score: 268.5 bits (685), Expect = 7.8e-69
Identity = 130/144 (90.28%), Postives = 135/144 (93.75%), Query Frame = 1


Query: 19  KEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIR 78
           K +GKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG KR+CHIR
Sbjct: 3   KNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIR 62

Query: 79  GKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGG 138
           GKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGI GG
Sbjct: 63  GKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGITGG 122

Query: 139 MDDDDDEGGGDAYIEFEDEDIDKI 163
           + D++DE GGD YIEFEDEDIDKI
Sbjct: 123 L-DEEDEAGGDEYIEFEDEDIDKI 145

The following BLAST results are available for this feature:

BLAST of ClCG02G002400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IF1A_ONOVI	8.9e-65	84.83	Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2	[more]
IF1A_WHEAT	1.9e-62	80.69	Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2	[more]
IF1AX_MOUSE	9.5e-51	69.44	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Ei...	[more]
IF1AX_HUMAN	9.5e-51	69.44	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EI...	[more]
IF1AX_PONAB	9.5e-51	69.44	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EI...	[more]

BLAST of ClCG02G002400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1Y5_CUCSA	5.2e-72	94.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037660 PE=3 SV=1	[more]
V4MNQ4_EUTSA	5.4e-69	88.89	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10005086mg PE=3 SV=1	[more]
G7ZYQ6_MEDTR	7.1e-69	89.58	Eukaryotic translation initiation factor 1A OS=Medicago truncatula GN=MTR_8g0281...	[more]
A9PCD3_POPTR	7.1e-69	89.58	Translation initiation factor eIF-1A family protein OS=Populus trichocarpa GN=PO...	[more]
A5BQH0_VITVI	7.1e-69	90.28	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01500 PE=3 SV=...	[more]

BLAST of ClCG02G002400 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04520.1	6.7e-71	87.50	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.3	3.2e-65	91.27	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of ClCG02G002400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453559\|ref\|XP_004144524.1\|	7.5e-72	94.44	PREDICTED: eukaryotic translation initiation factor 1A [Cucumis sativus]	[more]
gi\|658013696\|ref\|XP_008342155.1\|	1.6e-69	90.28	PREDICTED: eukaryotic translation initiation factor 1A [Malus domestica]	[more]
gi\|659115631\|ref\|XP_008457652.1\|	4.6e-69	90.28	PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo]	[more]
gi\|567143666\|ref\|XP_006395950.1\|	7.8e-69	88.89	hypothetical protein EUTSA_v10005086mg [Eutrema salsugineum]	[more]
gi\|470136575\|ref\|XP_004304062.1\|	7.8e-69	90.28	PREDICTED: eukaryotic translation initiation factor 1A [Fragaria vesca subsp. ve...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001253	TIF_eIF-1A
IPR006196	RNA-binding_domain_S1_IF1
IPR012340	NA-bd_OB-fold
IPR018104	TIF_eIF-1A_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003743	translation initiation factor activity
GO:0003723	RNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006413	translational initiation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G002400.1	ClCG02G002400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001253	Translation initiation factor 1A (eIF-1A)	PRODOM	PD005579		coord: 69..125 score: 5.0
IPR001253	Translation initiation factor 1A (eIF-1A)	HAMAP	MF_00216	aIF_1A	coord: 32..126 score: 17
IPR001253	Translation initiation factor 1A (eIF-1A)	PANTHER	PTHR21668	EIF-1A	coord: 18..162 score: 2.4E
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 44..126 score: 3.8
IPR001253	Translation initiation factor 1A (eIF-1A)	TIGRFAMs	TIGR00523	TIGR00523	coord: 30..126 score: 7.9
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 48..109 score: 2.2
IPR006196	RNA-binding domain, S1, IF1 type	PROFILE	PS50832	S1_IF1_TYPE	coord: 38..112 score: 30
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 19..161 score: 1.0
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 20..158 score: 1.06
IPR018104	Translation initiation factor 1A (eIF-1A), conserved site	PROSITE	PS01262	IF1A	coord: 57..79 scor
None	No IPR available	PANTHER	PTHR21668:SF5	NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN-RELATED	coord: 18..162 score: 2.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G002400	Csa7G037660	Cucumber (Chinese Long) v2	cuwcgB546
ClCG02G002400	MELO3C018872	Melon (DHL92) v3.5.1	mewcgB195
ClCG02G002400	Cla015645	Watermelon (97103) v1	wcgwmB198
ClCG02G002400	Cla97C02G028850	Watermelon (97103) v2	wcgwmbB138
ClCG02G002400	Bhi05G001242	Wax gourd	wcgwgoB266
ClCG02G002400	CSPI07G03150	Wild cucumber (PI 183967)	cpiwcgB574
ClCG02G002400	Cucsa.181120	Cucumber (Gy14) v1	cgywcgB322
ClCG02G002400	CmaCh11G017930	Cucurbita maxima (Rimu)	cmawcgB102
ClCG02G002400	CmaCh20G005650	Cucurbita maxima (Rimu)	cmawcgB494
ClCG02G002400	CmoCh20G006640	Cucurbita moschata (Rifu)	cmowcgB484
ClCG02G002400	CmoCh11G018680	Cucurbita moschata (Rifu)	cmowcgB094
ClCG02G002400	Lsi11G013910	Bottle gourd (USVL1VR-Ls)	lsiwcgB097
ClCG02G002400	Cp4.1LG15g07280	Cucurbita pepo (Zucchini)	cpewcgB233
ClCG02G002400	Cp4.1LG04g03890	Cucurbita pepo (Zucchini)	cpewcgB596
ClCG02G002400	Cp4.1LG16g04160	Cucurbita pepo (Zucchini)	cpewcgB267
ClCG02G002400	CsGy7G002820	Cucumber (Gy14) v2	cgybwcgB506
ClCG02G002400	MELO3C018872.2	Melon (DHL92) v3.6.1	medwcgB190
ClCG02G002400	CsaV3_7G003030	Cucumber (Chinese Long) v3	cucwcgB571

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G002400	Cucumber (Chinese Long) v3	cucwcgB570
ClCG02G002400	Watermelon (97103) v2	wcgwmbB135
ClCG02G002400	Watermelon (97103) v2	wcgwmbB148
ClCG02G002400	Watermelon (97103) v2	wcgwmbB150
ClCG02G002400	Wax gourd	wcgwgoB305
ClCG02G002400	Watermelon (Charleston Gray)	wcgwcgB047
ClCG02G002400	Watermelon (Charleston Gray)	wcgwcgB120
ClCG02G002400	Cucurbita maxima (Rimu)	cmawcgB460
ClCG02G002400	Cucurbita moschata (Rifu)	cmowcgB459
ClCG02G002400	Wild cucumber (PI 183967)	cpiwcgB134
ClCG02G002400	Wild cucumber (PI 183967)	cpiwcgB218
ClCG02G002400	Cucumber (Chinese Long) v2	cuwcgB128
ClCG02G002400	Melon (DHL92) v3.5.1	mewcgB092
ClCG02G002400	Watermelon (97103) v1	wcgwmB178
ClCG02G002400	Bottle gourd (USVL1VR-Ls)	lsiwcgB058
ClCG02G002400	Bottle gourd (USVL1VR-Ls)	lsiwcgB095
ClCG02G002400	Cucumber (Gy14) v2	cgybwcgB123
ClCG02G002400	Cucumber (Gy14) v2	cgybwcgB198
ClCG02G002400	Cucumber (Gy14) v2	cgybwcgB504
ClCG02G002400	Melon (DHL92) v3.6.1	medwcgB094
ClCG02G002400	Silver-seed gourd	carwcgB0194
ClCG02G002400	Silver-seed gourd	carwcgB0336
ClCG02G002400	Silver-seed gourd	carwcgB1037
ClCG02G002400	Cucumber (Chinese Long) v3	cucwcgB141
ClCG02G002400	Cucumber (Chinese Long) v3	cucwcgB219