Cp4.1LG13g08540 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG13g08540
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionCLAVATA3/ESR (CLE)-related protein 25
LocationCp4.1LG13 : 7880609 .. 7882835 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATACAGCCATTTTTGGACTAATTGGGATTAACACCTTAGCTTCTTCATAGTCTTGTTGTGAAGATTTGGCTATGCCTCGTTTTTTTACAAGCATATTGTTAACTGTTAAGTGCTCATCAGAGTTTATGAGATATTAGGGCCCCCATTTCCCCTTTTGTAGCTATAGGAAAATGTAGAAGCTAAGGCAATGGAAGAGGAGCTGTTGGACACATTATTCCACAATATAAAGTGACATGAACAGCTACTTTTCCGCGTTTAAATCAGATTCCTTCTCTCTCTTCCCACGCGAACACAAAGTACAGTTTTACTGATACAGTCTATAAATACAAACAAAACAGCCTTACAACCCGCCAAGACCTCAGCCAACCCAATTAGCTTTCCATCTCTCTTCTTTCCTCTTTCTTAGTCCATAGCTATCCATCTTCCCTTCCATACCCTGAAATGTCTGATTTTAGTCATTTCTGTGTTTCTGTTCTGAATGGATGATGACCTTGTTGGTCGGTTGGAGGCTGTGAGATAAGGAAAAGGATTTAGGTGTGATGGTGAGTAACTGTAGGTTCTTAAAGTCTCTGTTTGGAGCTTTTCTCTTTCTTGGTGTCATCTGGTTTTCTTTTATTGGAGTGATTGATAATGCTAGCCCAGCATCCAGAAGAGCGACAGACGTGCAGTGGAAGATGATTGGAAGAGGGAAGCATGTCTTTCATTGGCATTCTGATTTTTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGTACACAATTCTACTTGATCTAACTCACTATAACTACAGATATGTTTTGCTTATTTTCCTTTTCTTCTGCTCTTTGCAAGTATTGTCTTGTACCATTCTTGTCCCCTTTCCTGTCTTTTAATCTTTTATCTACGTAAATTTGGTGGGTTTTACGATTTTCTGTACAATTCTACAAAGAAATGCCTCGACTTTTTTAGAACAAGTCCGAGTCGAAACCTAGCTGTTAATGTTGCATTTCTGGTATCATCTTGAGGACAGAAGTTTGACCATAGAATTGTCCCTAAAGAAAAGGCAAATTAACGCGTTTGAAGTTGACTGCCCAACTTCAATTAGAGGAAAGAAAATGGACTGAGTTTTATTTCTATTAGTAAATTTATGAACTGTTACTCCATTGCTTTTATCACTTCCAATTGTCGTTATTTGTTTCCTTTGTACTGCAAATTGTATAGCACGGAACAGAATTTGGTCATTTGAAAGTAGTGTATTGCTCTGCCTCTACGCAGTTTGCTGGCATTTTTTTCCTTCTTTCTTTCTTTATTTGGCTGTAGCAATTTTAGTTGGTAAAAGAAATGCAGGAAACTATTTCAATTGAGATCTGTTGAAGTTGATGATAGACACTTTTTCTTTCAAAATAAAAAAGAACAAAAGTTCTTTTTTTTTTTTTTTCACTCTTTCTCTTATTTTTATGAGCTATTAAAGGTATTGGGGCAAGATCTTGACTGCTTTAGTTCGTAAGCTTTGAGATTATAGATGGGTTACATAATATTGTTTCTTTTCACTACAATACCATTGCAGACATGATAATCTCTCTCTCTCTCTGTGACATTGGCTAATGAATTATATTGCTCAAAATGTGAATTCAGGAGAGTAGGGAACTCTAAACAGCCACCAATTCGAGCCTAAACAAATCCTGGAGAGGGATCAGCTGCAGAAAAAGATCAGAAACGAACAGTTATTTTTTTTCTTTTACCTGTAAATGTTCATCTTTGCTCTCCATCAAGGATAGATCCTGCATTGAGACTTTTGTCCCTGAAAGCACTGACATGGCAACTGTTCTTAGTGGGTTCTTGGGAGTAGAAAAGAAAGAGATTTTGAATAACTTTCCCAGAAAATTCTCAGCTGTTGCTAGTCATCATTTATTTGATCTCAGATGCAAAGTGTTTGTTTCTTTCCTCGGAATTTGAAGATTTTGTAATGTTCCTTGTCGTTCATGCATAACTTGAATTCTCCATTGATATCTTTCTTTGTTTTTTTNCAATTTTGCATTTATCCCTTATGTGTGTTCGGTTGTCTATTTTTTTCAATTAATGTATATGTTGTTGAACAATTTTACATTTATCCCTTATTTGTGTTCGGTTGTCTACTTTCTTTTGTCATTTTGTGTGTTATGTCATGTCATTAATGTTTTGGCCAAATTAATTTAGGATCCTTTATTTTTTTGGTTGAAGCTGGTC

mRNA sequence

TATACAGCCATTTTTGGACTAATTGGGATTAACACCTTAGCTTCTTCATAGTCTTGTTGTGAAGATTTGGCTATGCCTCGTTTTTTTACAAGCATATTGTTAACTGTTAAGTGCTCATCAGAGTTTATGAGATATTAGGGCCCCCATTTCCCCTTTTGTAGCTATAGGAAAATGTAGAAGCTAAGGCAATGGAAGAGGAGCTGTTGGACACATTATTCCACAATATAAAGTGACATGAACAGCTACTTTTCCGCGTTTAAATCAGATTCCTTCTCTCTCTTCCCACGCGAACACAAAGTACAGTTTTACTGATACAGTCTATAAATACAAACAAAACAGCCTTACAACCCGCCAAGACCTCAGCCAACCCAATTAGCTTTCCATCTCTCTTCTTTCCTCTTTCTTAGTCCATAGCTATCCATCTTCCCTTCCATACCCTGAAATGTCTGATTTTAGTCATTTCTGTGTTTCTGTTCTGAATGGATGATGACCTTGTTGGTCGGTTGGAGGCTGTGAGATAAGGAAAAGGATTTAGGTGTGATGGTGAGTAACTGTAGGTTCTTAAAGTCTCTGTTTGGAGCTTTTCTCTTTCTTGGTGTCATCTGGTTTTCTTTTATTGGAGTGATTGATAATGCTAGCCCAGCATCCAGAAGAGCGACAGACGTGCAGTGGAAGATGATTGGAAGAGGGAAGCATGTCTTTCATTGGCATTCTGATTTTTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGAGAGTAGGGAACTCTAAACAGCCACCAATTCGAGCCTAAACAAATCCTGGAGAGGGATCAGCTGCAGAAAAAGATCAGAAACGAACAGTTATTTTTTTTCTTTTACCTGTAAATGTTCATCTTTGCTCTCCATCAAGGATAGATCCTGCATTGAGACTTTTGTCCCTGAAAGCACTGACATGGCAACTGTTCTTAGTGGGTTCTTGGGAGTAGAAAAGAAAGAGATTTTGAATAACTTTCCCAGAAAATTCTCAGCTGTTGCTAGTCATCATTTATTTGATCTCAGATGCAAAGTGTTTGTTTCTTTCCTCGGAATTTGAAGATTTTGTAATGTTCCTTGTCGTTCATGCATAACTTGAATTCTCCATTGATATCTTTCTTTGTTTTTTTNCAATTTTGCATTTATCCCTTATGTGTGTTCGGTTGTCTATTTTTTTCAATTAATGTATATGTTGTTGAACAATTTTACATTTATCCCTTATTTGTGTTCGGTTGTCTACTTTCTTTTGTCATTTTGTGTGTTATGTCATGTCATTAATGTTTTGGCCAAATTAATTTAGGATCCTTTATTTTTTTGGTTGAAGCTGGTC

Coding sequence (CDS)

ATGGTGAGTAACTGTAGGTTCTTAAAGTCTCTGTTTGGAGCTTTTCTCTTTCTTGGTGTCATCTGGTTTTCTTTTATTGGAGTGATTGATAATGCTAGCCCAGCATCCAGAAGAGCGACAGACGTGCAGTGGAAGATGATTGGAAGAGGGAAGCATGTCTTTCATTGGCATTCTGATTTTTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGAGAGTAGGGAACTCTAAACAGCCACCAATTCGAGCCTAA

Protein sequence

MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVGNSKQPPIRA
Homology
[Close]
BLAST of Cp4.1LG13g08540 vs. Swiss-Prot
Match: CLE25_ARATH (CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana GN=CLE25 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-09
Identity = 31/81 (38.27%), Postives = 52/81 (64.20%), Query Frame = 1 

Query: 8  LKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQW-KMIGRGKHVFHWHSDFYSVSKR 67
          +++L G    LG+I F  +G++ N++P+   + +V+  +  G+  ++FH       VSKR
Sbjct: 6  IRALVGVIASLGLIVFLLVGILANSAPSVPSSENVKTLRFSGKDVNLFH-------VSKR 65

Query: 68 RVPNGPDPIHNRRVGNSKQPP 88
          +VPNGPDPIHNR+   S++PP
Sbjct: 66 KVPNGPDPIHNRKAETSRRPP 79

[Close]
BLAST of Cp4.1LG13g08540 vs. TrEMBL
Match: A0A0A0KS32_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G633230 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 9.4e-39
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 1 

Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDF 60
          M S C FLKSLFGAFLFLG+IWFSFIGVIDNAS ASRR TD+QWK+IGR KH FHWHSDF
Sbjct: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVGNSKQPPIR 90
          YSVSKRRVPNGPDPIHNRRV NS+QPPIR
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIR 89

[Close]
BLAST of Cp4.1LG13g08540 vs. TrEMBL
Match: M5WZX3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019332mg PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-16
Identity = 47/93 (50.54%), Postives = 56/93 (60.22%), Query Frame = 1 

Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQ------WKMIGRGKHVF 60
          M S+ + L++LFGA L LGV WF   G++ N S      T         WK+IGR KH  
Sbjct: 1  MESDRKVLRTLFGALLLLGVFWFFLAGILVNRSTEKSTVTVSSTKMFKHWKLIGREKHAV 60

Query: 61 HWHSDFYSVSKRRVPNGPDPIHNRRVGNSKQPP 88
           W S F  VSKRRVPNGPDPIHNRR   ++QPP
Sbjct: 61 VWDSSFIYVSKRRVPNGPDPIHNRRAVKTRQPP 93

[Close]
BLAST of Cp4.1LG13g08540 vs. TrEMBL
Match: A0A067LAE6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09685 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.6e-16
Identity = 46/96 (47.92%), Postives = 58/96 (60.42%), Query Frame = 1 

Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQ------WKMIGRGKHVF 60
          M S  R L+++FGA + LGVIW   +G++ N +    R   V       WK+ GRGKH  
Sbjct: 1  MGSGNRVLRAIFGAGVLLGVIWLLCVGILANQATKMTRTAVVSTGPFEHWKLTGRGKHHI 60

Query: 61 HWHSDFYSVSKRRVPNGPDPIHNRRVGNSKQPPIRA 91
          H   D   VSKRRVPNGPDPIHNRR   ++QPP R+
Sbjct: 61 HQDLDLNYVSKRRVPNGPDPIHNRRASEARQPPGRS 96

[Close]
BLAST of Cp4.1LG13g08540 vs. TrEMBL
Match: A0A061ELW4_THECC (Gb:AAC66597.1 OS=Theobroma cacao GN=TCM_018123 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-14
Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 1 

Query: 6   RFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDV-------QWKMIGRGKHVFHWHS 65
           R L+SLFG  L +GVIWF F+G+I N + A  ++  V        W+ + + ++ FH   
Sbjct: 353 RALRSLFGVTLLVGVIWFFFVGIIANHATAMTKSMMVPSTRDFKHWEFVAQERYNFHQDF 412

Query: 66  DFYSVSKRRVPNGPDPIHNRRVGNSKQPPIRA 91
               VSKRRVPNGPDPIHNRR   S++PP RA
Sbjct: 413 HLNYVSKRRVPNGPDPIHNRRAAKSREPPGRA 444

[Close]
BLAST of Cp4.1LG13g08540 vs. TrEMBL
Match: A0A067FYD1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034498mg PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.2e-14
Identity = 44/87 (50.57%), Postives = 54/87 (62.07%), Query Frame = 1 

Query: 8  LKSLFGAFLFLGVIWFSFIGVIDNASPASRRA---TDVQ--WKMIGRGKHVFHWHSDFYS 67
          L+ L GA +FLGVIW  F G++ N +  +      T++   WK+I R KH  H   D   
Sbjct: 6  LRFLIGAVIFLGVIWLLFAGILANHATKTTVTVPPTEISKHWKLIAREKHHAHQDMDLNY 65

Query: 68 VSKRRVPNGPDPIHNRRVGNSKQPPIR 90
          VSKRRVPNGPDPIHNRR   S+QPP R
Sbjct: 66 VSKRRVPNGPDPIHNRRASKSRQPPGR 92

[Close]
BLAST of Cp4.1LG13g08540 vs. TAIR10
Match: AT3G28455.1 (AT3G28455.1 CLAVATA3/ESR-RELATED 25)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-10
Identity = 31/81 (38.27%), Postives = 52/81 (64.20%), Query Frame = 1 

Query: 8  LKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQW-KMIGRGKHVFHWHSDFYSVSKR 67
          +++L G    LG+I F  +G++ N++P+   + +V+  +  G+  ++FH       VSKR
Sbjct: 6  IRALVGVIASLGLIVFLLVGILANSAPSVPSSENVKTLRFSGKDVNLFH-------VSKR 65

Query: 68 RVPNGPDPIHNRRVGNSKQPP 88
          +VPNGPDPIHNR+   S++PP
Sbjct: 66 KVPNGPDPIHNRKAETSRRPP 79

[Close]
BLAST of Cp4.1LG13g08540 vs. NCBI nr
Match: gi|700197248|gb|KGN52425.1| (hypothetical protein Csa_5G633230 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-38
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 1 

Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDF 60
          M S C FLKSLFGAFLFLG+IWFSFIGVIDNAS ASRR TD+QWK+IGR KH FHWHSDF
Sbjct: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVGNSKQPPIR 90
          YSVSKRRVPNGPDPIHNRRV NS+QPPIR
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIR 89

[Close]
BLAST of Cp4.1LG13g08540 vs. NCBI nr
Match: gi|659117629|ref|XP_008458704.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 3.0e-38
Identity = 76/89 (85.39%), Postives = 81/89 (91.01%), Query Frame = 1 

Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDF 60
          M S C FLKSLFGAFLFLG+IWFSFIGVIDNAS ASRR TD+QWK+IG+ KH FHWHSDF
Sbjct: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGKEKHFFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVGNSKQPPIR 90
          YSVSKRRVPNGPDPIHNRRV NS+QPPIR
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIR 89

[Close]
BLAST of Cp4.1LG13g08540 vs. NCBI nr
Match: gi|657974945|ref|XP_008379312.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Malus domestica])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-17
Identity = 50/97 (51.55%), Postives = 61/97 (62.89%), Query Frame = 1 

Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQ-------WKMIGRGKHV 60
          M S  + L+++FGA L LGV WF   G++ N S A + A  V        WK+IGR KH 
Sbjct: 1  MASGRKVLRAMFGALLLLGVFWFFLAGILVNRS-AEKPAVTVSPTEIFKHWKLIGREKHA 60

Query: 61 FHWHSDFYSVSKRRVPNGPDPIHNRRVGNSKQPPIRA 91
            W S F  VSKRRVPNGPDPIHNRR   ++QPP+RA
Sbjct: 61 VVWDSTFIYVSKRRVPNGPDPIHNRRAVKTRQPPMRA 96

[Close]
BLAST of Cp4.1LG13g08540 vs. NCBI nr
Match: gi|645249317|ref|XP_008230697.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Prunus mume])

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-17
Identity = 49/96 (51.04%), Postives = 58/96 (60.42%), Query Frame = 1 

Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQ------WKMIGRGKHVF 60
          M S+ + L++LFGA L LGV WF   G++ N S      T         WK+IGR KH  
Sbjct: 1  MESDRKVLRTLFGALLLLGVFWFFLAGILVNRSTEKSTVTVSSTKMFKHWKLIGREKHAV 60

Query: 61 HWHSDFYSVSKRRVPNGPDPIHNRRVGNSKQPPIRA 91
           W S F  VSKRRVPNGPDPIHNRR   ++QPP RA
Sbjct: 61 VWDSSFIYVSKRRVPNGPDPIHNRRAVKTRQPPTRA 96

[Close]
BLAST of Cp4.1LG13g08540 vs. NCBI nr
Match: gi|595971641|ref|XP_007217582.1| (hypothetical protein PRUPE_ppa019332mg [Prunus persica])

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16
Identity = 47/93 (50.54%), Postives = 56/93 (60.22%), Query Frame = 1 

Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQ------WKMIGRGKHVF 60
          M S+ + L++LFGA L LGV WF   G++ N S      T         WK+IGR KH  
Sbjct: 1  MESDRKVLRTLFGALLLLGVFWFFLAGILVNRSTEKSTVTVSSTKMFKHWKLIGREKHAV 60

Query: 61 HWHSDFYSVSKRRVPNGPDPIHNRRVGNSKQPP 88
           W S F  VSKRRVPNGPDPIHNRR   ++QPP
Sbjct: 61 VWDSSFIYVSKRRVPNGPDPIHNRRAVKTRQPP 93

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g08540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CLE25_ARATH2.3e-0938.27CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana GN=CLE25 PE=2 SV=1[more]
BLAST of Cp4.1LG13g08540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KS32_CUCSA9.4e-3986.52Uncharacterized protein OS=Cucumis sativus GN=Csa_5G633230 PE=4 SV=1[more]
M5WZX3_PRUPE1.3e-1650.54Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019332mg PE=4 SV=1[more]
A0A067LAE6_JATCU6.6e-1647.92Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09685 PE=4 SV=1[more]
A0A061ELW4_THECC2.1e-1446.74Gb:AAC66597.1 OS=Theobroma cacao GN=TCM_018123 PE=4 SV=1[more]
A0A067FYD1_CITSI6.2e-1450.57Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034498mg PE=4 SV=1[more]
BLAST of Cp4.1LG13g08540 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G28455.11.3e-1038.27 CLAVATA3/ESR-RELATED 25[more]
BLAST of Cp4.1LG13g08540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197248|gb|KGN52425.1|1.4e-3886.52hypothetical protein Csa_5G633230 [Cucumis sativus][more]
gi|659117629|ref|XP_008458704.1|3.0e-3885.39PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Cucumis melo][more]
gi|657974945|ref|XP_008379312.1|1.3e-1751.55PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Malus domestica][more]
gi|645249317|ref|XP_008230697.1|2.2e-1751.04PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Prunus mume][more]
gi|595971641|ref|XP_007217582.1|1.9e-1650.54hypothetical protein PRUPE_ppa019332mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g08540.1Cp4.1LG13g08540.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34277FAMILY NOT NAMEDcoord: 1..90
score: 1.2
NoneNo IPR availablePANTHERPTHR34277:SF3CLAVATA3/ESR (CLE)-RELATED PROTEIN 25coord: 1..90
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG13g08540Cucsa.158640Cucumber (Gy14) v1cgycpeB0424
Cp4.1LG13g08540CmaCh15G002960Cucurbita maxima (Rimu)cmacpeB305
Cp4.1LG13g08540CmaCh04G027420Cucurbita maxima (Rimu)cmacpeB705
Cp4.1LG13g08540CmoCh04G028720Cucurbita moschata (Rifu)cmocpeB657
Cp4.1LG13g08540CmoCh15G003100Cucurbita moschata (Rifu)cmocpeB268
Cp4.1LG13g08540Cla010358Watermelon (97103) v1cpewmB166
Cp4.1LG13g08540Csa5G633230Cucumber (Chinese Long) v2cpecuB175
Cp4.1LG13g08540ClCG09G018520Watermelon (Charleston Gray)cpewcgB154
Cp4.1LG13g08540CSPI05G28630Wild cucumber (PI 183967)cpecpiB177
Cp4.1LG13g08540Lsi02G015150Bottle gourd (USVL1VR-Ls)cpelsiB141
Cp4.1LG13g08540CsaV3_5G037710Cucumber (Chinese Long) v3cpecucB0210
Cp4.1LG13g08540Bhi06G000381Wax gourdcpewgoB0239
Cp4.1LG13g08540CsGy5G027940Cucumber (Gy14) v2cgybcpeB598
Cp4.1LG13g08540Carg04406Silver-seed gourdcarcpeB0962
Cp4.1LG13g08540Carg02269Silver-seed gourdcarcpeB0366
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG13g08540Cp4.1LG01g23020Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG13g08540Cucumber (Gy14) v2cgybcpeB312
Cp4.1LG13g08540Melon (DHL92) v3.6.1cpemedB182
Cp4.1LG13g08540Melon (DHL92) v3.6.1cpemedB194
Cp4.1LG13g08540Silver-seed gourdcarcpeB0609
Cp4.1LG13g08540Cucumber (Chinese Long) v3cpecucB0192
Cp4.1LG13g08540Wax gourdcpewgoB0262
Cp4.1LG13g08540Cucurbita pepo (Zucchini)cpecpeB218
Cp4.1LG13g08540Cucurbita maxima (Rimu)cmacpeB263
Cp4.1LG13g08540Watermelon (Charleston Gray)cpewcgB155
Cp4.1LG13g08540Melon (DHL92) v3.5.1cpemeB155