CmoCh15G003100 (gene) Cucurbita moschata (Rifu)

NameCmoCh15G003100
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCLAVATA3/ESR (CLE)-related protein 25
LocationCmo_Chr15 : 1447855 .. 1449825 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGTAACTGTAGGTTCTTAAAGTCTCTGTTTGGAGCTTTTCTCTTTCTTGGTGTCATCTGGTTTTCTTTTATTGGAGTGATTGATAATGCTAGCCCAGCATCCAGAAGAGCGACAGACGTGCAGTGGAAGATGATTGGAAGAGGGAAGCATGTCTTTCATTGGCATTCTGATTTTTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGTACACAATTCTACTTGATCTAACTCACTATAACAACAGATATGTTTTGCTTATTTTCCTTTTCTTCTGGTCTTTGCAAGTATTGTCTTGTACCATTCCTTGTCCCTTTTCCTGTCTTTTAATCTTTTGTCTACTTAAATTTGGTGGGTTTTACGATTTTCTGTACAATTCTACAAAGAAATGCCTCGACTTTTTTAGAACAAGTCCGAGTCGCTGTTAATGTTCCATTTCTGGTATCATCTTGAGGACAGAAGTTTGACCATAGAATTGTCCCTAAAGAAAAGGCAAATTAACGCGTTTGAAGTTGACTGCCCAACTTCAATTAGAGGAAAGATAAATGGACTGAGTTTTATTTCTATTAGTAAATTTATGAACTGTTACTCCATTGCTTTAATCACTTCCAATTGTCTTTATGAGTTTCCTTCTGTACTGCAAATTGTATAGCACGGAACAGAATTTGGTCATTTGAAAGTAGTGTATTGCTCTGCCTCTAAGCAGTTTGCTCGCATTCTTTTCCTTCTTACTTTCTTTATTTGGCTGTAGCAATTTTAGTTGGTAAAAGAAATGCAGGAAACTATTTCAATTGAGATCTGTTGAAGTTGATGATAGACACTTTTTCTTTCAAAATAAAAAAGAACAAAAGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCACTCTTTCTCTTATTTTTATGAGCTATTAAAGGTATTGGGGCAAGATCTTGACTGCTTTAGTTCGTAAGCTTTGAGATTATAGATGGGTTACATAATATTGTTTCTTTTCGCTACAATACCATTTGCAGACATGATGATCTCTCTCTCTCTATATGACATTGGCTAATGAATTATATTGCTCAAAATGTGAATTCAGGAGAGTAGGAAACTCTAAACAGCCACCAATTCGAGCCTAAACAAATCCTGGAGATGGATCAGCTGCAGAAAAAGATGAGAAATGAACAGTTATTTTTTTCCTTTACCTGTAAATGTTCATCTTTGCTCTCCATCAAGGATAGATCCTGCATTGAGACTTTTGTCCCTGAAAGCACTGACATGGCTACTGTTCTTAGTGGGTTCTTGGGAGTAGAAAAGAAAGAGATTTTGAATAACTTTCCCAGAAAATTCTCAGCTGTTGCTAGTCATCATTTATTTGATCTCAGATGCAAAGTGTTTGTTTCTTTCCTCGGAATTTGAAGATTTTATAATGTTCCTTGTCGTTCATGCATAACTTGAATTTTCCATTCA

mRNA sequence

ATGGTGAGTAACTGTAGGTTCTTAAAGTCTCTGTTTGGAGCTTTTCTCTTTCTTGGTGTCATCTGGTTTTCTTTTATTGGAGTGATTGATAATGCTAGCCCAGCATCCAGAAGAGCGACAGACGTGCAGTGGAAGATGATTGGAAGAGGGAAGCATGTCTTTCATTGGCATTCTGATTTTTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGAGAGTAGGAAACTCTAAACAGCCACCAATTCGAGCCTAAACAAATCCTGGAGATGGATCAGCTGCAGAAAAAGATGAGAAATGAACAGTTATTTTTTTCCTTTACCTGTAAATGTTCATCTTTGCTCTCCATCAAGGATAGATCCTGCATTGAGACTTTTGTCCCTGAAAGCACTGACATGGCTACTGTTCTTAGTGGGTTCTTGGGAGTAGAAAAGAAAGAGATTTTGAATAACTTTCCCAGAAAATTCTCAGCTGTTGCTAGTCATCATTTATTTGATCTCAGATGCAAAGTGTTTGTTTCTTTCCTCGGAATTTGAAGATTTTATAATGTTCCTTGTCGTTCATGCATAACTTGAATTTTCCATTCA

Coding sequence (CDS)

ATGGTGAGTAACTGTAGGTTCTTAAAGTCTCTGTTTGGAGCTTTTCTCTTTCTTGGTGTCATCTGGTTTTCTTTTATTGGAGTGATTGATAATGCTAGCCCAGCATCCAGAAGAGCGACAGACGTGCAGTGGAAGATGATTGGAAGAGGGAAGCATGTCTTTCATTGGCATTCTGATTTTTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGAGAGTAGGAAACTCTAAACAGCCACCAATTCGAGCCTAA
BLAST of CmoCh15G003100 vs. Swiss-Prot
Match: CLE25_ARATH (CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana GN=CLE25 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-09
Identity = 31/81 (38.27%), Postives = 52/81 (64.20%), Query Frame = 1

Query: 8  LKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQW-KMIGRGKHVFHWHSDFYSVSKR 67
          +++L G    LG+I F  +G++ N++P+   + +V+  +  G+  ++FH       VSKR
Sbjct: 6  IRALVGVIASLGLIVFLLVGILANSAPSVPSSENVKTLRFSGKDVNLFH-------VSKR 65

Query: 68 RVPNGPDPIHNRRVGNSKQPP 88
          +VPNGPDPIHNR+   S++PP
Sbjct: 66 KVPNGPDPIHNRKAETSRRPP 79

BLAST of CmoCh15G003100 vs. TrEMBL
Match: A0A0A0KS32_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G633230 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 9.4e-39
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 1

Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDF 60
          M S C FLKSLFGAFLFLG+IWFSFIGVIDNAS ASRR TD+QWK+IGR KH FHWHSDF
Sbjct: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVGNSKQPPIR 90
          YSVSKRRVPNGPDPIHNRRV NS+QPPIR
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIR 89

BLAST of CmoCh15G003100 vs. TrEMBL
Match: M5WZX3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019332mg PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-16
Identity = 47/93 (50.54%), Postives = 56/93 (60.22%), Query Frame = 1

Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQ------WKMIGRGKHVF 60
          M S+ + L++LFGA L LGV WF   G++ N S      T         WK+IGR KH  
Sbjct: 1  MESDRKVLRTLFGALLLLGVFWFFLAGILVNRSTEKSTVTVSSTKMFKHWKLIGREKHAV 60

Query: 61 HWHSDFYSVSKRRVPNGPDPIHNRRVGNSKQPP 88
           W S F  VSKRRVPNGPDPIHNRR   ++QPP
Sbjct: 61 VWDSSFIYVSKRRVPNGPDPIHNRRAVKTRQPP 93

BLAST of CmoCh15G003100 vs. TrEMBL
Match: A0A067LAE6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09685 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.6e-16
Identity = 46/96 (47.92%), Postives = 58/96 (60.42%), Query Frame = 1

Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQ------WKMIGRGKHVF 60
          M S  R L+++FGA + LGVIW   +G++ N +    R   V       WK+ GRGKH  
Sbjct: 1  MGSGNRVLRAIFGAGVLLGVIWLLCVGILANQATKMTRTAVVSTGPFEHWKLTGRGKHHI 60

Query: 61 HWHSDFYSVSKRRVPNGPDPIHNRRVGNSKQPPIRA 91
          H   D   VSKRRVPNGPDPIHNRR   ++QPP R+
Sbjct: 61 HQDLDLNYVSKRRVPNGPDPIHNRRASEARQPPGRS 96

BLAST of CmoCh15G003100 vs. TrEMBL
Match: A0A061ELW4_THECC (Gb:AAC66597.1 OS=Theobroma cacao GN=TCM_018123 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-14
Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 1

Query: 6   RFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDV-------QWKMIGRGKHVFHWHS 65
           R L+SLFG  L +GVIWF F+G+I N + A  ++  V        W+ + + ++ FH   
Sbjct: 353 RALRSLFGVTLLVGVIWFFFVGIIANHATAMTKSMMVPSTRDFKHWEFVAQERYNFHQDF 412

Query: 66  DFYSVSKRRVPNGPDPIHNRRVGNSKQPPIRA 91
               VSKRRVPNGPDPIHNRR   S++PP RA
Sbjct: 413 HLNYVSKRRVPNGPDPIHNRRAAKSREPPGRA 444

BLAST of CmoCh15G003100 vs. TrEMBL
Match: A0A067FYD1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034498mg PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.2e-14
Identity = 44/87 (50.57%), Postives = 54/87 (62.07%), Query Frame = 1

Query: 8  LKSLFGAFLFLGVIWFSFIGVIDNASPASRRA---TDVQ--WKMIGRGKHVFHWHSDFYS 67
          L+ L GA +FLGVIW  F G++ N +  +      T++   WK+I R KH  H   D   
Sbjct: 6  LRFLIGAVIFLGVIWLLFAGILANHATKTTVTVPPTEISKHWKLIAREKHHAHQDMDLNY 65

Query: 68 VSKRRVPNGPDPIHNRRVGNSKQPPIR 90
          VSKRRVPNGPDPIHNRR   S+QPP R
Sbjct: 66 VSKRRVPNGPDPIHNRRASKSRQPPGR 92

BLAST of CmoCh15G003100 vs. TAIR10
Match: AT3G28455.1 (AT3G28455.1 CLAVATA3/ESR-RELATED 25)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-10
Identity = 31/81 (38.27%), Postives = 52/81 (64.20%), Query Frame = 1

Query: 8  LKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQW-KMIGRGKHVFHWHSDFYSVSKR 67
          +++L G    LG+I F  +G++ N++P+   + +V+  +  G+  ++FH       VSKR
Sbjct: 6  IRALVGVIASLGLIVFLLVGILANSAPSVPSSENVKTLRFSGKDVNLFH-------VSKR 65

Query: 68 RVPNGPDPIHNRRVGNSKQPP 88
          +VPNGPDPIHNR+   S++PP
Sbjct: 66 KVPNGPDPIHNRKAETSRRPP 79

BLAST of CmoCh15G003100 vs. NCBI nr
Match: gi|700197248|gb|KGN52425.1| (hypothetical protein Csa_5G633230 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-38
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 1

Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDF 60
          M S C FLKSLFGAFLFLG+IWFSFIGVIDNAS ASRR TD+QWK+IGR KH FHWHSDF
Sbjct: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVGNSKQPPIR 90
          YSVSKRRVPNGPDPIHNRRV NS+QPPIR
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIR 89

BLAST of CmoCh15G003100 vs. NCBI nr
Match: gi|659117629|ref|XP_008458704.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 3.0e-38
Identity = 76/89 (85.39%), Postives = 81/89 (91.01%), Query Frame = 1

Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDF 60
          M S C FLKSLFGAFLFLG+IWFSFIGVIDNAS ASRR TD+QWK+IG+ KH FHWHSDF
Sbjct: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGKEKHFFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVGNSKQPPIR 90
          YSVSKRRVPNGPDPIHNRRV NS+QPPIR
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIR 89

BLAST of CmoCh15G003100 vs. NCBI nr
Match: gi|657974945|ref|XP_008379312.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Malus domestica])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-17
Identity = 50/97 (51.55%), Postives = 61/97 (62.89%), Query Frame = 1

Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQ-------WKMIGRGKHV 60
          M S  + L+++FGA L LGV WF   G++ N S A + A  V        WK+IGR KH 
Sbjct: 1  MASGRKVLRAMFGALLLLGVFWFFLAGILVNRS-AEKPAVTVSPTEIFKHWKLIGREKHA 60

Query: 61 FHWHSDFYSVSKRRVPNGPDPIHNRRVGNSKQPPIRA 91
            W S F  VSKRRVPNGPDPIHNRR   ++QPP+RA
Sbjct: 61 VVWDSTFIYVSKRRVPNGPDPIHNRRAVKTRQPPMRA 96

BLAST of CmoCh15G003100 vs. NCBI nr
Match: gi|645249317|ref|XP_008230697.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Prunus mume])

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-17
Identity = 49/96 (51.04%), Postives = 58/96 (60.42%), Query Frame = 1

Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQ------WKMIGRGKHVF 60
          M S+ + L++LFGA L LGV WF   G++ N S      T         WK+IGR KH  
Sbjct: 1  MESDRKVLRTLFGALLLLGVFWFFLAGILVNRSTEKSTVTVSSTKMFKHWKLIGREKHAV 60

Query: 61 HWHSDFYSVSKRRVPNGPDPIHNRRVGNSKQPPIRA 91
           W S F  VSKRRVPNGPDPIHNRR   ++QPP RA
Sbjct: 61 VWDSSFIYVSKRRVPNGPDPIHNRRAVKTRQPPTRA 96

BLAST of CmoCh15G003100 vs. NCBI nr
Match: gi|595971641|ref|XP_007217582.1| (hypothetical protein PRUPE_ppa019332mg [Prunus persica])

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16
Identity = 47/93 (50.54%), Postives = 56/93 (60.22%), Query Frame = 1

Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQ------WKMIGRGKHVF 60
          M S+ + L++LFGA L LGV WF   G++ N S      T         WK+IGR KH  
Sbjct: 1  MESDRKVLRTLFGALLLLGVFWFFLAGILVNRSTEKSTVTVSSTKMFKHWKLIGREKHAV 60

Query: 61 HWHSDFYSVSKRRVPNGPDPIHNRRVGNSKQPP 88
           W S F  VSKRRVPNGPDPIHNRR   ++QPP
Sbjct: 61 VWDSSFIYVSKRRVPNGPDPIHNRRAVKTRQPP 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CLE25_ARATH2.3e-0938.27CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana GN=CLE25 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KS32_CUCSA9.4e-3986.52Uncharacterized protein OS=Cucumis sativus GN=Csa_5G633230 PE=4 SV=1[more]
M5WZX3_PRUPE1.3e-1650.54Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019332mg PE=4 SV=1[more]
A0A067LAE6_JATCU6.6e-1647.92Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09685 PE=4 SV=1[more]
A0A061ELW4_THECC2.1e-1446.74Gb:AAC66597.1 OS=Theobroma cacao GN=TCM_018123 PE=4 SV=1[more]
A0A067FYD1_CITSI6.2e-1450.57Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034498mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G28455.11.3e-1038.27 CLAVATA3/ESR-RELATED 25[more]
Match NameE-valueIdentityDescription
gi|700197248|gb|KGN52425.1|1.4e-3886.52hypothetical protein Csa_5G633230 [Cucumis sativus][more]
gi|659117629|ref|XP_008458704.1|3.0e-3885.39PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Cucumis melo][more]
gi|657974945|ref|XP_008379312.1|1.3e-1751.55PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Malus domestica][more]
gi|645249317|ref|XP_008230697.1|2.2e-1751.04PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Prunus mume][more]
gi|595971641|ref|XP_007217582.1|1.9e-1650.54hypothetical protein PRUPE_ppa019332mg [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G003100.1CmoCh15G003100.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34277FAMILY NOT NAMEDcoord: 1..90
score: 1.2
NoneNo IPR availablePANTHERPTHR34277:SF3CLAVATA3/ESR (CLE)-RELATED PROTEIN 25coord: 1..90
score: 1.2