CmaCh04G027420 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G027420
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCLAVATA3/ESR (CLE)-related protein 25
LocationCma_Chr04 : 18441999 .. 18444734 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCGGTGGATTGGAAAGCCCTAATATTCACATCCATGAACGTGGGAGAGAGTCCTAAACATGCAAGGACCTCGTATTCTCACATGAATGCAGAATCAATTTACAGTAATCAGAATTCTTGTAACCAGACATGCGAAGCTGCCTGCCTCATGAAATTACAAAGAAAATGGTTCTTATGGGCATCAATCTACTTTGGTATCAGATACTTGTTTCTTAGTTGAATTGCTTTGATTTTCCTTCAGTATTGATTTGAGCCAGATTAGTTCATTGTGTACTGTGGGCTTGCGACAGCAGCGCATCTAAACAAATGGTAGTATTCATTTTTCATTGTTCTCTGATAGCAAATCTAAACAAATGGTAGTATTCATTTTTCATTGTTCTCTGATAGCAATTGCTCGTATGTTTTTTTCCTAATCAAGGTTTAAAATCAAGGGTTTCCTTGCAATAATTGGTCGCTGATCAACTACCAGACACTCAAAACCAACTGCCTCAATTTTCTTCAGGTGAGCAATCATTTCTCTGATGACTATGTAACATTTGGCCTAATTGGGATTAACACTTTATCTTCTTCGCAAATTTTAGTTTAATATTCGGAGATTTGGCTATGCCTCGTCTTTACGAACCTGATGTTAAGTGCTCTGAGCTTATGAGATAGTGAGATCCCCCAATTCCCCTTTTGTAGATATAGGAAAATGCAGAAACTAAGGCGAAGAAAAAGGAGCTGATGGACACATTCTTCCACAATAAAGTGACATAAATAAATACTTTTCTGCGTTTAAATCAGATTCCATCTCTCTCTTCCCACGAGAACGCAAAGTACAGTTTCACTGATACCGTCTTTATATACAAACAAAACAGCCTTACAACCCGCCAATACCTCAGCCAACCGAATTAGTTTTCCATCTCTCTTCTTTCTTCTTTCTTAGTCTATAGTTATCCATCTTCACTTCCATGCCCTGAAAATGTCTGATTTTAGTCATTTCTGTGTTTCTGTTCTGAATGGATGATGACCATTGTTGGTCAATTGGAAGCTGTGAGTTTAGGAAAAAGGTTTGGGTGTAATGGAACCTAACTGTAGATTTTTTAGGCTTCTGTTTGGAGTTTTTCTCTTTCTTGGTATCATCTGGTTTTCTTTCATAGGAGGGATTGATAATGCTAGCCCAGCATCCAGAAGAGCGACAGACATGCAGTGGAAGGTGATTGGAAGCGAGAAGCATGTCTTTCATTGGCATTCTGATTTCTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGTACGCAATTCTACTTGATCTAATATATTCAAATTGCAGATATGCTTGCTTATTTTCTTTTTCTTCTGCTCTTTGCAAGTATCTTCTGAACTATTCGTCTGTTCTCCTTCCTTTCTTTTATATTTTTTATCTCCTTCATTTTGTGGGTTTTGACGCTTTGGTGTAGAATTCTTGAAATTTTTGTCATCTTGAGGACAGAAATTTGACCATTGAATTTTGTCCCTAAAAAAAAGGCAAATTAACGCGTCTGAAGGTGACCACCCTACTTCAATTAAAAGAAAGATAAGGAACTGAGAGTTCTATTACCATTAGTGAATTTAGGAAGCTACTCTATTGCCTCTCATCTTTTCCAATTGTCTTTATTAGTTTCCTTGTTTACTACAAAATTGTGAACAGAATTCATTCAAACCCCCACCATTTGATCATTTTAAAATAGTGTATTGCTCTGCCTCTAACCAGTGTGCTTTCTTTTCTTTTTCTTTCATTGTTTGGTTTTAACAACTTGAGTTTGTTAAAGAGATGCAACAAACTATTCCAATTGAGAAGTGTTGATATTGGAGATTGTCTCACTTCTTTCCCCCCAAAAAAGAAAAAAGAACTTTTGTTCTTTTTTATCACTCTTTCTCTTATTTTTATGAGCTGTTAAAGGCATTGGGGCAAGAACTTGACCACTTTAGTTCATAAGCTTGACAGATTACATAAAATTGTTTCTCTTTGCAACAAAACCATTGCAGCATGATACTCTCTGTCTTTATGACATGGGCTGATGATTTTCCTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCACAAAATGTGAATCTCAGGAGAGTGGAGAATTCTAAACAACCACCAGTTCGAGCCTAAGCAAATCAAGGAGATAGATCAGCTGCAGAAAAGGCTCAGAAATGAACAGTTAATTTTTTTTTACCTGTAAGTAAATGGTTTTTATTTTTATTTTTATGCTCTCCATCAAGGATAGATCCTGCATTGAGACTTTTGTCCCCTAAAGCACTGACATGGCAACTGTTCTTAGTGGGTTTTGGGGGGTAAAGAGATTTTGGATAACTTTCCCAGAAAAATTTTCAGTTGTTAGTAGTCATCATTTATTCGATCTAAGGTGCAAAGTTTTTGTTTTTCTCGGAATTTGAAGTTATTATATTTTGTTTCTTGTCGTTCACATGTATATGTGTAACTTGAATTTTCCATTAATATCTTTGTTGTTTTTTTCCCATGCTTTTAGGCGACACATTCTTAAAAAGTGGAAAATGATTGATTCTTGTAATTGGTGATTTAAATAGTAAAAAGTGGCCTATAAACCTGCTCCA

mRNA sequence

ATGGAGTCGGTGGATTGGAAAGCCCTAATATTCACATCCATGAACGTGGGAGAGAGTCCTAAACATGCAAGGACCTCGTATTCTCACATGAATGCAGAATCAATTTACAGTAATCAGAATTCTTGTAACCAGACATGCGAAGCTGCCTGCCTCATGAAATTACAAAGAAAATGGTTCTTATGGGCATCAATCTACTTTGACACTCAAAACCAACTGCCTCAATTTTCTTCAGGAGGGATTGATAATGCTAGCCCAGCATCCAGAAGAGCGACAGACATGCAGTGGAAGGTGATTGGAAGCGAGAAGCATGTCTTTCATTGGCATTCTGATTTCTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGAGAGTGGAGAATTCTAAACAACCACCAGTTCGAGCCTAAGCAAATCAAGGAGATAGATCAGCTGCAGAAAAGGCTCAGAAATGAACAGTTAATTTTTTTTTACCTGTAAGTAAATGGTTTTTATTTTTATTTTTATGCTCTCCATCAAGGATAGATCCTGCATTGAGACTTTTGTCCCCTAAAGCACTGACATGGCAACTGTTCTTAGTGGGTTTTGGGGGGTAAAGAGATTTTGGATAACTTTCCCAGAAAAATTTTCAGTTGTTAGTAGTCATCATTTATTCGATCTAAGGTGCAAAGTTTTTGTTTTTCTCGGAATTTGAAGTTATTATATTTTGTTTCTTGTCGTTCACATGTATATGTGTAACTTGAATTTTCCATTAATATCTTTGTTGTTTTTTTCCCATGCTTTTAGGCGACACATTCTTAAAAAGTGGAAAATGATTGATTCTTGTAATTGGTGATTTAAATAGTAAAAAGTGGCCTATAAACCTGCTCCA

Coding sequence (CDS)

ATGGAGTCGGTGGATTGGAAAGCCCTAATATTCACATCCATGAACGTGGGAGAGAGTCCTAAACATGCAAGGACCTCGTATTCTCACATGAATGCAGAATCAATTTACAGTAATCAGAATTCTTGTAACCAGACATGCGAAGCTGCCTGCCTCATGAAATTACAAAGAAAATGGTTCTTATGGGCATCAATCTACTTTGACACTCAAAACCAACTGCCTCAATTTTCTTCAGGAGGGATTGATAATGCTAGCCCAGCATCCAGAAGAGCGACAGACATGCAGTGGAAGGTGATTGGAAGCGAGAAGCATGTCTTTCATTGGCATTCTGATTTCTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGAGAGTGGAGAATTCTAAACAACCACCAGTTCGAGCCTAA

Protein sequence

MESVDWKALIFTSMNVGESPKHARTSYSHMNAESIYSNQNSCNQTCEAACLMKLQRKWFLWASIYFDTQNQLPQFSSGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQPPVRA
BLAST of CmaCh04G027420 vs. TrEMBL
Match: A0A0A0KS32_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G633230 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.5e-25
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 1

Query: 78  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 137
           G IDNAS ASRR TDMQWK+IG EKH FHWHSDFYSVSKRRVPNGPDPIHNRRVENS+QP
Sbjct: 27  GVIDNASLASRRETDMQWKLIGREKHFFHWHSDFYSVSKRRVPNGPDPIHNRRVENSRQP 86

Query: 138 PVR 141
           P+R
Sbjct: 87  PIR 89

BLAST of CmaCh04G027420 vs. TrEMBL
Match: M5WZX3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019332mg PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.2e-09
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 1

Query: 95  WKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQPP 139
           WK+IG EKH   W S F  VSKRRVPNGPDPIHNRR   ++QPP
Sbjct: 50  WKLIGREKHAVVWDSSFIYVSKRRVPNGPDPIHNRRAVKTRQPP 93

BLAST of CmaCh04G027420 vs. TrEMBL
Match: A0A067FYD1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034498mg PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.9e-08
Identity = 30/46 (65.22%), Postives = 32/46 (69.57%), Query Frame = 1

Query: 95  WKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQPPVR 141
           WK+I  EKH  H   D   VSKRRVPNGPDPIHNRR   S+QPP R
Sbjct: 47  WKLIAREKHHAHQDMDLNYVSKRRVPNGPDPIHNRRASKSRQPPGR 92

BLAST of CmaCh04G027420 vs. TrEMBL
Match: A0A067LAE6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09685 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.1e-07
Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 1

Query: 95  WKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQPPVRA 142
           WK+ G  KH  H   D   VSKRRVPNGPDPIHNRR   ++QPP R+
Sbjct: 50  WKLTGRGKHHIHQDLDLNYVSKRRVPNGPDPIHNRRASEARQPPGRS 96

BLAST of CmaCh04G027420 vs. TrEMBL
Match: B9HU81_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s04900g PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.7e-07
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 1

Query: 92  DMQWKVIGSEKHVFHWHSDF-YSVSKRRVPNGPDPIHNRRVENSKQPPVRA 142
           D +  VIG EK V++   D  Y +SKRRVPNGPDPIHNRR  NSK+PP RA
Sbjct: 59  DHEKDVIGREKLVYNSELDLNYMMSKRRVPNGPDPIHNRRAGNSKRPPGRA 109

BLAST of CmaCh04G027420 vs. TAIR10
Match: AT3G28455.1 (AT3G28455.1 CLAVATA3/ESR-RELATED 25)

HSP 1 Score: 49.3 bits (116), Expect = 2.3e-06
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1

Query: 85  PASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQPP 139
           P+S     +++   G + ++FH       VSKR+VPNGPDPIHNR+ E S++PP
Sbjct: 35  PSSENVKTLRFS--GKDVNLFH-------VSKRKVPNGPDPIHNRKAETSRRPP 79

BLAST of CmaCh04G027420 vs. NCBI nr
Match: gi|659117629|ref|XP_008458704.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 6.0e-25
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 1

Query: 78  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 137
           G IDNAS ASRR TDMQWK+IG EKH FHWHSDFYSVSKRRVPNGPDPIHNRRVENS+QP
Sbjct: 27  GVIDNASLASRRETDMQWKLIGKEKHFFHWHSDFYSVSKRRVPNGPDPIHNRRVENSRQP 86

Query: 138 PVR 141
           P+R
Sbjct: 87  PIR 89

BLAST of CmaCh04G027420 vs. NCBI nr
Match: gi|700197248|gb|KGN52425.1| (hypothetical protein Csa_5G633230 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 7.8e-25
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 1

Query: 78  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 137
           G IDNAS ASRR TDMQWK+IG EKH FHWHSDFYSVSKRRVPNGPDPIHNRRVENS+QP
Sbjct: 27  GVIDNASLASRRETDMQWKLIGREKHFFHWHSDFYSVSKRRVPNGPDPIHNRRVENSRQP 86

Query: 138 PVR 141
           P+R
Sbjct: 87  PIR 89

BLAST of CmaCh04G027420 vs. NCBI nr
Match: gi|657974945|ref|XP_008379312.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Malus domestica])

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-10
Identity = 39/84 (46.43%), Postives = 45/84 (53.57%), Query Frame = 1

Query: 58  WFLWASIYFDTQNQLPQFSSGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKR 117
           WF  A I  +   + P         A   S       WK+IG EKH   W S F  VSKR
Sbjct: 22  WFFLAGILVNRSAEKP---------AVTVSPTEIFKHWKLIGREKHAVVWDSTFIYVSKR 81

Query: 118 RVPNGPDPIHNRRVENSKQPPVRA 142
           RVPNGPDPIHNRR   ++QPP+RA
Sbjct: 82  RVPNGPDPIHNRRAVKTRQPPMRA 96

BLAST of CmaCh04G027420 vs. NCBI nr
Match: gi|645249317|ref|XP_008230697.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Prunus mume])

HSP 1 Score: 72.8 bits (177), Expect = 5.4e-10
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 1

Query: 95  WKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQPPVRA 142
           WK+IG EKH   W S F  VSKRRVPNGPDPIHNRR   ++QPP RA
Sbjct: 50  WKLIGREKHAVVWDSSFIYVSKRRVPNGPDPIHNRRAVKTRQPPTRA 96

BLAST of CmaCh04G027420 vs. NCBI nr
Match: gi|658012485|ref|XP_008341510.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 25-like [Malus domestica])

HSP 1 Score: 72.4 bits (176), Expect = 7.1e-10
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 1

Query: 95  WKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQPPVRA 142
           WK+IG EKH   W S F  VSKRRVPNGPDPIHNRR   ++QPP RA
Sbjct: 51  WKLIGREKHTVVWDSTFIYVSKRRVPNGPDPIHNRRAVKTRQPPTRA 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KS32_CUCSA5.5e-2587.30Uncharacterized protein OS=Cucumis sativus GN=Csa_5G633230 PE=4 SV=1[more]
M5WZX3_PRUPE4.2e-0968.18Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019332mg PE=4 SV=1[more]
A0A067FYD1_CITSI7.9e-0865.22Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034498mg PE=4 SV=1[more]
A0A067LAE6_JATCU5.1e-0759.57Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09685 PE=4 SV=1[more]
B9HU81_POPTR8.7e-0762.75Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s04900g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G28455.12.3e-0644.44 CLAVATA3/ESR-RELATED 25[more]
Match NameE-valueIdentityDescription
gi|659117629|ref|XP_008458704.1|6.0e-2587.30PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Cucumis melo][more]
gi|700197248|gb|KGN52425.1|7.8e-2587.30hypothetical protein Csa_5G633230 [Cucumis sativus][more]
gi|657974945|ref|XP_008379312.1|1.4e-1046.43PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Malus domestica][more]
gi|645249317|ref|XP_008230697.1|5.4e-1068.09PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Prunus mume][more]
gi|658012485|ref|XP_008341510.1|7.1e-1068.09PREDICTED: CLAVATA3/ESR (CLE)-related protein 25-like [Malus domestica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G027420.1CmaCh04G027420.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34277FAMILY NOT NAMEDcoord: 86..141
score: 1.6
NoneNo IPR availablePANTHERPTHR34277:SF2CLAVATA3/ESR (CLE)-RELATED PROTEIN 26coord: 86..141
score: 1.6

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh04G027420CmaCh15G002960Cucurbita maxima (Rimu)cmacmaB324