Carg04406 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04406
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	CLAVATA3/ESR (CLE)-related protein 25-like
Location	Cucurbita_argyrosperma_scaffold_032 : 282502 .. 283999 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCCCACGCGAACACAAAGTACAGTTTCACTGATACCGTCTTTATATACAAACAAAACAGCCTTACAACCCGCCAATACCTCAGCCAACCGAATTAGTTTTCCATCTCTCTTCTTTCTTCTTTCTTAGTCTATAGTTATCCATCTTCACTTCCATGCCCAGAAAATGTCTGATTTTAGTCATTTCTGTGTTTCTGTTCTGAATGGATGATGACCATTGTTGGTCAATTGGAAGCTGTGAGTTTAGGAAAAAGGTTTGGGTGTAATGGAACCTAACTGTAGATTTTTTAGGCTTCTGTTTGGAGTTTTTCTCTTTCTTGGTATCATCTGGTTTTCTTTCATAGGAGGGATTGATAATGCTAGTCCAGCATCCAGAAGAGCGACAGACATGCAGTGGAAGGTGATTGGAAGCGAGAAGCATGTCTTTCATTGGCATTCTGATTTCTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGTACGCAATTCTACTTGATCTAATATATTAAAATTGCAGATATGCTTGCTTATTTTCTTTTTCTTCTGCTCTTTGCAAGTATCTTCTGAACTATTCGTCTGTTCTCCTTCCTTTCTTTTATATTTTTTATCTCCTTAATTTTGTGGGTTTTGACGCTTTGGTGTAGAATTCTTTAAATTTTTGTAATCTTGAGGACAGAAATTTGACCATTGAATTTTGTCCCTAAAAAAAGGCAAATTAACGCGTCTGAAGGTGACCACCCTACTTCAATTAGAAGAAAGATAAGGAACTGAGAGTTCTATTACCATTAGTGAATTTAGGAAGCTACTCTATTGCCTCTCATCGTTTCCAGTTGTCGTTATTAGTTTCCTTGTTTACTACAAAATTGTGAACAGAATTCATTCAAACCCCCGTCATTTGATCATTTTAGAATAATGTATTGCTCTGCCTCTAACCAGTGTGCTTTCTTTTCTTTTTCTTTCATTGTTTGGTATTAACAACTTGAGTTTGTTAAAGAGATGCAACAAACTATTTCAATTGAGAAGTGTTGATATTGGAGATAGTCTCACTTCTTTCCCCCCATAAGAGAAAAAAGAACAAAAGTTCTTTTTTATCACTCTTTCTCTTATTTTTATGAGCTGTTAAAGGCATTGGGGCAAGAACTTGACCACTTTAGTTCATAAGCTTGACGGATTACATAAAATTGTTTCTCTTTGCAACAAAACCATTGCAGCATGATACTCTCTGTCTTTATGACATGGGCTGATGATTTTCTTTTTTTGCACAAAATGTGAATCTCAGGAGAGTGGAGAATTCCAAACAACCACCAGTTCGAGCCTAAGCAAATCAAGGAGATAGATCAGCTGCAGAAAAGGCTCAGAAATGAACAGTTAATTTTTTTTTTTTACCTGTAAGTAAATGGTTTTTATTTTTATTTTTATGCTCTCCATCAAGGATAGATCCTGCATTGAGACTTTTGTCCCCTAAAGCACTGACATGG

mRNA sequence

TCTTCCCACGCGAACACAAAGTACAGTTTCACTGATACCGTCTTTATATACAAACAAAACAGCCTTACAACCCGCCAATACCTCAGCCAACCGAATTAGTTTTCCATCTCTCTTCTTTCTTCTTTCTTAGTCTATAGTTATCCATCTTCACTTCCATGCCCAGAAAATGTCTGATTTTAGTCATTTCTGTGTTTCTGTTCTGAATGGATGATGACCATTGTTGGTCAATTGGAAGCTGTGAGTTTAGGAAAAAGGTTTGGGTGTAATGGAACCTAACTGTAGATTTTTTAGGCTTCTGTTTGGAGTTTTTCTCTTTCTTGGTATCATCTGGTTTTCTTTCATAGGAGGGATTGATAATGCTAGTCCAGCATCCAGAAGAGCGACAGACATGCAGTGGAAGGTGATTGGAAGCGAGAAGCATGTCTTTCATTGGCATTCTGATTTCTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGAGAGTGGAGAATTCCAAACAACCACCAGTTCGAGCCTAAGCAAATCAAGGAGATAGATCAGCTGCAGAAAAGGCTCAGAAATGAACAGTTAATTTTTTTTTTTTACCTGTAAGTAAATGGTTTTTATTTTTATTTTTATGCTCTCCATCAAGGATAGATCCTGCATTGAGACTTTTGTCCCCTAAAGCACTGACATGG

Coding sequence (CDS)

ATGGAACCTAACTGTAGATTTTTTAGGCTTCTGTTTGGAGTTTTTCTCTTTCTTGGTATCATCTGGTTTTCTTTCATAGGAGGGATTGATAATGCTAGTCCAGCATCCAGAAGAGCGACAGACATGCAGTGGAAGGTGATTGGAAGCGAGAAGCATGTCTTTCATTGGCATTCTGATTTCTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGAGAGTGGAGAATTCCAAACAACCACCAGTTCGAGCCTAA

Protein sequence

MEPNCRFFRLLFGVFLFLGIIWFSFIGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQPPVRA

Homology

[Close]

BLAST of Carg04406 vs. NCBI nr
Match: KGN52425.1 (hypothetical protein Csa_5G633230 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 8.5e-37
Identity = 74/89 (83.15%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1  MEPNCRFFRLLFGVFLFLGIIWFSFIGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDF 60
          ME  C F + LFG FLFLGIIWFSFIG IDNAS ASRR TDMQWK+IG EKH FHWHSDF
Sbjct: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVENSKQPPVR 90
          YSVSKRRVPNGPDPIHNRRVENS+QPP+R
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIR 89

[Close]

BLAST of Carg04406 vs. NCBI nr
Match: XP_022961033.1 (uncharacterized protein LOC111461653 isoform X2 [Cucurbita moschata])

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 27  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 86
           GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP
Sbjct: 50  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 109

Query: 87  PVRA 91
           PVRA
Sbjct: 110 PVRA 113

[Close]

BLAST of Carg04406 vs. NCBI nr
Match: XP_022961025.1 (uncharacterized protein LOC111461653 isoform X1 [Cucurbita moschata])

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 27  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 86
           GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP
Sbjct: 50  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 109

Query: 87  PVRA 91
           PVRA
Sbjct: 110 PVRA 113

[Close]

BLAST of Carg04406 vs. NCBI nr
Match: XP_008230697.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Prunus mume])

HSP 1 Score: 92.4 bits (228), Expect = 8.2e-16
Identity = 47/96 (48.96%), Postives = 54/96 (56.25%), Query Frame = 0


Query: 1  MEPNCRFFRLLFGVFLFLGIIWFSFIGGIDNASPASRRAT------DMQWKVIGSEKHVF 60
          ME + +  R LFG  L LG+ WF   G + N S      T         WK+IG EKH  
Sbjct: 1  MESDRKVLRTLFGALLLLGVFWFFLAGILVNRSTEKSTVTVSSTKMFKHWKLIGREKHAV 60

Query: 61 HWHSDFYSVSKRRVPNGPDPIHNRRVENSKQPPVRA 91
           W S F  VSKRRVPNGPDPIHNRR   ++QPP RA
Sbjct: 61 VWDSSFIYVSKRRVPNGPDPIHNRRAVKTRQPPTRA 96

[Close]

BLAST of Carg04406 vs. NCBI nr
Match: ONI19370.1 (hypothetical protein PRUPE_3G275200 [Prunus persica])

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 45/93 (48.39%), Postives = 52/93 (55.91%), Query Frame = 0


Query: 1  MEPNCRFFRLLFGVFLFLGIIWFSFIGGIDNASPASRRAT------DMQWKVIGSEKHVF 60
          ME + +  R LFG  L LG+ WF   G + N S      T         WK+IG EKH  
Sbjct: 1  MESDRKVLRTLFGALLLLGVFWFFLAGILVNRSTEKSTVTVSSTKMFKHWKLIGREKHAV 60

Query: 61 HWHSDFYSVSKRRVPNGPDPIHNRRVENSKQPP 88
           W S F  VSKRRVPNGPDPIHNRR   ++QPP
Sbjct: 61 VWDSSFIYVSKRRVPNGPDPIHNRRAVKTRQPP 93

[Close]

BLAST of Carg04406 vs. TAIR10
Match: AT3G28455.1 (CLAVATA3/ESR-RELATED 25)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-10
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 9  RLLFGVFLFLGIIWFSFIGGIDNASPASRRATDMQ-WKVIGSEKHVFHWHSDFYSVSKRR 68
          R L GV   LG+I F  +G + N++P+   + +++  +  G + ++FH       VSKR+
Sbjct: 7  RALVGVIASLGLIVFLLVGILANSAPSVPSSENVKTLRFSGKDVNLFH-------VSKRK 66

Query: 69 VPNGPDPIHNRRVENSKQPP 88
          VPNGPDPIHNR+ E S++PP
Sbjct: 67 VPNGPDPIHNRKAETSRRPP 79

[Close]

BLAST of Carg04406 vs. Swiss-Prot
Match: sp|Q8LFL4|CLE25_ARATH (CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.9e-09
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 9  RLLFGVFLFLGIIWFSFIGGIDNASPASRRATDMQ-WKVIGSEKHVFHWHSDFYSVSKRR 68
          R L GV   LG+I F  +G + N++P+   + +++  +  G + ++FH       VSKR+
Sbjct: 7  RALVGVIASLGLIVFLLVGILANSAPSVPSSENVKTLRFSGKDVNLFH-------VSKRK 66

Query: 69 VPNGPDPIHNRRVENSKQPP 88
          VPNGPDPIHNR+ E S++PP
Sbjct: 67 VPNGPDPIHNRKAETSRRPP 79

[Close]

BLAST of Carg04406 vs. TrEMBL
Match: tr|A0A0A0KS32|A0A0A0KS32_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633230 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.6e-37
Identity = 74/89 (83.15%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1  MEPNCRFFRLLFGVFLFLGIIWFSFIGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDF 60
          ME  C F + LFG FLFLGIIWFSFIG IDNAS ASRR TDMQWK+IG EKH FHWHSDF
Sbjct: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVENSKQPPVR 90
          YSVSKRRVPNGPDPIHNRRVENS+QPP+R
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIR 89

[Close]

BLAST of Carg04406 vs. TrEMBL
Match: tr|M5WZX3|M5WZX3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G275200 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.9e-15
Identity = 45/93 (48.39%), Postives = 52/93 (55.91%), Query Frame = 0


Query: 1  MEPNCRFFRLLFGVFLFLGIIWFSFIGGIDNASPASRRAT------DMQWKVIGSEKHVF 60
          ME + +  R LFG  L LG+ WF   G + N S      T         WK+IG EKH  
Sbjct: 1  MESDRKVLRTLFGALLLLGVFWFFLAGILVNRSTEKSTVTVSSTKMFKHWKLIGREKHAV 60

Query: 61 HWHSDFYSVSKRRVPNGPDPIHNRRVENSKQPP 88
           W S F  VSKRRVPNGPDPIHNRR   ++QPP
Sbjct: 61 VWDSSFIYVSKRRVPNGPDPIHNRRAVKTRQPP 93

[Close]

BLAST of Carg04406 vs. TrEMBL
Match: tr|A0A2I4GLK9|A0A2I4GLK9_9ROSI (CLAVATA3/ESR (CLE)-related protein 25-like OS=Juglans regia OX=51240 GN=LOC109008937 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 6  RFFRLLFGVFLFLGIIWFSFIGGIDN----ASPASRRATDM--QWKVIGSEKHVFHWHSD 65
          R FR LFG  +F+G+IW S +G I N     S  + R+T++   WK+IG EKH  H +SD
Sbjct: 6  RVFRALFGALVFVGVIWLSTVGIIANRANKTSTITARSTEIFRYWKLIGREKHTAHRYSD 65

Query: 66 FYSVSKRRVPNGPDPIHNRRVENSKQPP 88
             VS+RRVP+GPDPIHNRR   +++PP
Sbjct: 66 LNYVSRRRVPHGPDPIHNRRAGKTRRPP 93

[Close]

BLAST of Carg04406 vs. TrEMBL
Match: tr|A0A2P4N744|A0A2P4N744_QUESU (Clavata3/esr (Cle)-related protein 25 OS=Quercus suber OX=58331 GN=CFP56_28095 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.6e-13
Identity = 44/92 (47.83%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 6  RFFRLLFGVFLFLGIIWFSFIGGIDNASPASRRAT--------DMQWKVIGSEKHVFHWH 65
          R FR  FG  +F+G+IWF  +G +  A+ AS+R+T           WK+I  EKH   W 
Sbjct: 6  RVFRATFGALVFVGVIWFITVGIL--ANRASKRSTITVQSSQIFKYWKLIAREKHAVQWD 65

Query: 66 SDFYSVSKRRVPNGPDPIHNRRVENSKQPPVR 90
           +   VSKRRVPNGPDPIHNRR   + QPP R
Sbjct: 66 FNLNYVSKRRVPNGPDPIHNRRAVKTGQPPGR 95

[Close]

BLAST of Carg04406 vs. TrEMBL
Match: tr|A0A061ELW4|A0A061ELW4_THECC (Gb:AAC66597.1 OS=Theobroma cacao OX=3641 GN=TCM_018123 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 6   RFFRLLFGVFLFLGIIWFSFIGGIDNASPASRRATDM-------QWKVIGSEKHVFHWHS 65
           R  R LFGV L +G+IWF F+G I N + A  ++  +        W+ +  E++ FH   
Sbjct: 353 RALRSLFGVTLLVGVIWFFFVGIIANHATAMTKSMMVPSTRDFKHWEFVAQERYNFHQDF 412

Query: 66  DFYSVSKRRVPNGPDPIHNRRVENSKQPPVRA 91
               VSKRRVPNGPDPIHNRR   S++PP RA
Sbjct: 413 HLNYVSKRRVPNGPDPIHNRRAAKSREPPGRA 444

The following BLAST results are available for this feature:

BLAST of Carg04406 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52425.1	8.5e-37	83.15	hypothetical protein Csa_5G633230 [Cucumis sativus]	[more]
XP_022961033.1	2.0e-30	100.00	uncharacterized protein LOC111461653 isoform X2 [Cucurbita moschata]	[more]
XP_022961025.1	2.0e-30	100.00	uncharacterized protein LOC111461653 isoform X1 [Cucurbita moschata]	[more]
XP_008230697.1	8.2e-16	48.96	PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Prunus mume]	[more]
ONI19370.1	1.2e-14	48.39	hypothetical protein PRUPE_3G275200 [Prunus persica]	[more]

BLAST of Carg04406 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G28455.1	2.2e-10	41.25	CLAVATA3/ESR-RELATED 25	[more]

BLAST of Carg04406 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LFL4\|CLE25_ARATH	3.9e-09	41.25	CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 P...	[more]

BLAST of Carg04406 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KS32\|A0A0A0KS32_CUCSA	5.6e-37	83.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633230 PE=4 SV=1	[more]
tr\|M5WZX3\|M5WZX3_PRUPE	7.9e-15	48.39	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G275200 PE=4 SV=1	[more]
tr\|A0A2I4GLK9\|A0A2I4GLK9_9ROSI	1.8e-14	50.00	CLAVATA3/ESR (CLE)-related protein 25-like OS=Juglans regia OX=51240 GN=LOC10900...	[more]
tr\|A0A2P4N744\|A0A2P4N744_QUESU	9.6e-13	47.83	Clavata3/esr (Cle)-related protein 25 OS=Quercus suber OX=58331 GN=CFP56_28095 P...	[more]
tr\|A0A061ELW4\|A0A061ELW4_THECC	2.1e-12	45.65	Gb:AAC66597.1 OS=Theobroma cacao OX=3641 GN=TCM_018123 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0045168	cell-cell signaling involved in cell fate commitment

Vocabulary: **INTERPRO**
Term	Definition
IPR039316	CLE25/26

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04406-RA	Carg04406-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..90
IPR039316	CLAVATA3/ESR (CLE)-related protein 25/26	PANTHER	PTHR34277	FAMILY NOT NAMED	coord: 7..90

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04406	Cla010358	Watermelon (97103) v1	carwmB0679
Carg04406	Csa5G633230	Cucumber (Chinese Long) v2	carcuB0708
Carg04406	ClCG09G018520	Watermelon (Charleston Gray)	carwcgB0657
Carg04406	CSPI05G28630	Wild cucumber (PI 183967)	carcpiB0722
Carg04406	Cucsa.158640	Cucumber (Gy14) v1	carcgyB0763
Carg04406	CmaCh04G027420	Cucurbita maxima (Rimu)	carcmaB0967
Carg04406	CmaCh15G002960	Cucurbita maxima (Rimu)	carcmaB0961
Carg04406	CmoCh15G003100	Cucurbita moschata (Rifu)	carcmoB0936
Carg04406	CmoCh04G028720	Cucurbita moschata (Rifu)	carcmoB0940
Carg04406	Lsi02G015150	Bottle gourd (USVL1VR-Ls)	carlsiB623
Carg04406	Cp4.1LG01g23020	Cucurbita pepo (Zucchini)	carcpeB0965
Carg04406	Cp4.1LG13g08540	Cucurbita pepo (Zucchini)	carcpeB0962
Carg04406	CsGy5G027940	Cucumber (Gy14) v2	carcgybB0686
Carg04406	CsaV3_5G037710	Cucumber (Chinese Long) v3	carcucB0725
Carg04406	Cla97C09G179940	Watermelon (97103) v2	carwmbB0714
Carg04406	Bhi06G000381	Wax gourd	carwgoB0801

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg04406	Carg02269	Silver-seed gourd	carcarB306

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04406	Silver-seed gourd	carcarB393
Carg04406	Melon (DHL92) v3.5.1	carmeB0682
Carg04406	Melon (DHL92) v3.6.1	carmedB0694
Carg04406	Wax gourd	carwgoB0808