Cp4.1LG13g03010 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG13g03010
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Descriptioncytokinin response factor 4
LocationCp4.1LG13 : 2529013 .. 2529804 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTCCGACCATTCTTCGGAAACCCGGAAACTTCGCCGGCCGGACCAACGTTGGTTCGAGAATTGTTCGGATTTCAATGACCGACCCGGACGCTACGGACTCGTCATCCAGTGACGAAGATGCGGTGAATTTCACGCGCCGCCGTGTGAAGCGGTATGTTGGCGAGATCACCATCGGCACGGCGGCGGGCGAGGGTGGCCGGAAGAAGAAAAAGAAGAAGAAGACGGGTAACGTGAGGAAGTTTCGCGGCGTCCGGCGGCGGCCGTGGGGGAAATGGGCGGCCGAGATACGAGACTCCGACCGCCGTGTACGGATGTGGTTGGGGACTTACGACACAGCAGAGGAGGCCGCTATAGCGTACGACAGCGCTGCCGTGAAGCTCCGAGGACCAACAGCTTTAACTAACTTTCCCACTCCGCCGCCACCGCCGCCATTTTCTTGCGACGACCCATCGTCTCCGACAAATCTCTCTTCTCCGACATCGGTCCTCCATTACAGAACTCACCTCGCCGAATGCTTGCCGTCGGACCGGGCCACCGTAAACGGCGGCGGCGCCGACGTATCTCCGGTAGTCGATTTTCTCTTCTCCGACGACATATTCAAATCGATTATTTTGGAACCGCCTTTTTTTCTCGAGTACCAAACAAGTCCCATACCGGAAACTCCATGGGCCGGCGGCGGCGGCTGGGGGGAAACGGTGGGAGCGGCGGAGTGCAATAAAAAAGTAGAAGAAGATGATTATTTTGAAGAAATTTTGATGGGGTCGGATCCTTTGGTGGTCCTATGA

mRNA sequence

ATGGAAGCTCCGACCATTCTTCGGAAACCCGGAAACTTCGCCGGCCGGACCAACGTTGGTTCGAGAATTGTTCGGATTTCAATGACCGACCCGGACGCTACGGACTCGTCATCCAGTGACGAAGATGCGGTGAATTTCACGCGCCGCCGTGTGAAGCGAACTCACCTCGCCGAATGCTTGCCGTCGGACCGGGCCACCGTAAACGGCGGCGGCGCCGACGTATCTCCGGTAGTCGATTTTCTCTTCTCCGACGACATATTCAAATCGATTATTTTGGAACCGCCTTTTTTTCTCGAGTACCAAACAAGTCCCATACCGGAAACTCCATGGGCCGGCGGCGGCGGCTGGGGGGAAACGGTGGGAGCGGCGGAGTGCAATAAAAAAGTAGAAGAAGATGATTATTTTGAAGAAATTTTGATGGGGTCGGATCCTTTGGTGGTCCTATGA

Coding sequence (CDS)

ATGGAAGCTCCGACCATTCTTCGGAAACCCGGAAACTTCGCCGGCCGGACCAACGTTGGTTCGAGAATTGTTCGGATTTCAATGACCGACCCGGACGCTACGGACTCGTCATCCAGTGACGAAGATGCGGTGAATTTCACGCGCCGCCGTGTGAAGCGAACTCACCTCGCCGAATGCTTGCCGTCGGACCGGGCCACCGTAAACGGCGGCGGCGCCGACGTATCTCCGGTAGTCGATTTTCTCTTCTCCGACGACATATTCAAATCGATTATTTTGGAACCGCCTTTTTTTCTCGAGTACCAAACAAGTCCCATACCGGAAACTCCATGGGCCGGCGGCGGCGGCTGGGGGGAAACGGTGGGAGCGGCGGAGTGCAATAAAAAAGTAGAAGAAGATGATTATTTTGAAGAAATTTTGATGGGGTCGGATCCTTTGGTGGTCCTATGA

Protein sequence

MEAPTILRKPGNFAGRTNVGSRIVRISMTDPDATDSSSSDEDAVNFTRRRVKRTHLAECLPSDRATVNGGGADVSPVVDFLFSDDIFKSIILEPPFFLEYQTSPIPETPWAGGGGWGETVGAAECNKKVEEDDYFEEILMGSDPLVVL
Homology
[Close]
BLAST of Cp4.1LG13g03010 vs. TrEMBL
Match: A0A0A0KJI1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139630 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-17
Identity = 58/123 (47.15%), Postives = 72/123 (58.54%), Query Frame = 1 

Query: 31  PDATDSSSSDEDAVNFTRRRVKRTHLAECLPSDRATVNGGGADVSPVVDFL-FSDDIFKS 90
           P +T    S    ++     + RTH  EC  S RA +       SPVVD+  FSDDIFKS
Sbjct: 152 PPSTGQEPSSPTNISSPTSVLHRTHFTECSSSYRAVIE------SPVVDYCPFSDDIFKS 211

Query: 91  IILEPPFFLEYQTSPIPETPWAGGGGWGET----VGAAECNKKVEEDDYFEEILMGSDPL 149
           I+LE P F EYQ++ I E PW   GG   +    V AA  +++VE+ D FEEILMGSDPL
Sbjct: 212 ILLESPLFPEYQSTLITEAPWIDAGGGARSGDLVVAAAGSDERVEDHDCFEEILMGSDPL 268

[Close]
BLAST of Cp4.1LG13g03010 vs. NCBI nr
Match: gi|449456486|ref|XP_004145980.1| (PREDICTED: ethylene-responsive transcription factor CRF2-like [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 2.8e-17
Identity = 58/123 (47.15%), Postives = 72/123 (58.54%), Query Frame = 1 

Query: 31  PDATDSSSSDEDAVNFTRRRVKRTHLAECLPSDRATVNGGGADVSPVVDFL-FSDDIFKS 90
           P +T    S    ++     + RTH  EC  S RA +       SPVVD+  FSDDIFKS
Sbjct: 152 PPSTGQEPSSPTNISSPTSVLHRTHFTECSSSYRAVIE------SPVVDYCPFSDDIFKS 211

Query: 91  IILEPPFFLEYQTSPIPETPWAGGGGWGET----VGAAECNKKVEEDDYFEEILMGSDPL 149
           I+LE P F EYQ++ I E PW   GG   +    V AA  +++VE+ D FEEILMGSDPL
Sbjct: 212 ILLESPLFPEYQSTLITEAPWIDAGGGARSGDLVVAAAGSDERVEDHDCFEEILMGSDPL 268

[Close]
BLAST of Cp4.1LG13g03010 vs. NCBI nr
Match: gi|659074380|ref|XP_008437573.1| (PREDICTED: ethylene-responsive transcription factor CRF1-like [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 7.0e-16
Identity = 58/123 (47.15%), Postives = 69/123 (56.10%), Query Frame = 1 

Query: 29  TDPDATDSSSSDEDAVNFTRRRVKRTHLAECLPSDRATVNGGGADVSPVVDFLFSDDIFK 88
           T P +T    S    ++     + RT   EC  S RA  +      SPVVD  FSDDIFK
Sbjct: 152 TPPPSTGDEPSSPTNISSPTSVLYRTQFTECSSSYRAVND------SPVVDCPFSDDIFK 211

Query: 89  SIILEPPFFLEYQTSPIPETPWA---GGGGWGETVGAAECNKKVEEDDYFEEILMGSDPL 148
           S +LE P F EYQ++ I E PW    GG    + V AA   + VE+ DYFEEILMGSDPL
Sbjct: 212 SSVLESPLFPEYQSTLITEAPWIDADGGARSSDLVAAAGSVEIVEDHDYFEEILMGSDPL 268

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g03010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g03010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJI1_CUCSA2.0e-1747.15Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139630 PE=4 SV=1[more]
BLAST of Cp4.1LG13g03010 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g03010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449456486|ref|XP_004145980.1|2.8e-1747.15PREDICTED: ethylene-responsive transcription factor CRF2-like [Cucumis sativus][more]
gi|659074380|ref|XP_008437573.1|7.0e-1647.15PREDICTED: ethylene-responsive transcription factor CRF1-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g03010.1Cp4.1LG13g03010.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG13g03010Cucsa.201950Cucumber (Gy14) v1cgycpeB0571
Cp4.1LG13g03010CmaCh15G010430Cucurbita maxima (Rimu)cmacpeB305
Cp4.1LG13g03010CmaCh02G010990Cucurbita maxima (Rimu)cmacpeB602
Cp4.1LG13g03010CmoCh15G011020Cucurbita moschata (Rifu)cmocpeB268
Cp4.1LG13g03010Cla004912Watermelon (97103) v1cpewmB187
Cp4.1LG13g03010Csa5G139630Cucumber (Chinese Long) v2cpecuB188
Cp4.1LG13g03010MELO3C005867Melon (DHL92) v3.5.1cpemeB148
Cp4.1LG13g03010ClCG01G000610Watermelon (Charleston Gray)cpewcgB167
Cp4.1LG13g03010CSPI05G03380Wild cucumber (PI 183967)cpecpiB189
Cp4.1LG13g03010Lsi09G000420Bottle gourd (USVL1VR-Ls)cpelsiB134
Cp4.1LG13g03010MELO3C005867.2Melon (DHL92) v3.6.1cpemedB175
Cp4.1LG13g03010CsaV3_5G000710Cucumber (Chinese Long) v3cpecucB0226
Cp4.1LG13g03010Bhi12G000538Wax gourdcpewgoB0221
Cp4.1LG13g03010CsGy5G000620Cucumber (Gy14) v2cgybcpeB610
Cp4.1LG13g03010Carg14033Silver-seed gourdcarcpeB0713
Cp4.1LG13g03010Carg26221Silver-seed gourdcarcpeB0417
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG13g03010Cp4.1LG05g06240Cucurbita pepo (Zucchini)cpecpeB227
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG13g03010Silver-seed gourdcarcpeB0760
Cp4.1LG13g03010Silver-seed gourdcarcpeB1375
Cp4.1LG13g03010Cucurbita pepo (Zucchini)cpecpeB021
Cp4.1LG13g03010Cucurbita pepo (Zucchini)cpecpeB197
Cp4.1LG13g03010Cucurbita maxima (Rimu)cmacpeB343
Cp4.1LG13g03010Cucurbita maxima (Rimu)cmacpeB423
Cp4.1LG13g03010Cucurbita moschata (Rifu)cmocpeB306
Cp4.1LG13g03010Cucurbita moschata (Rifu)cmocpeB384
Cp4.1LG13g03010Cucurbita moschata (Rifu)cmocpeB551
Cp4.1LG13g03010Watermelon (Charleston Gray)cpewcgB173
Cp4.1LG13g03010Watermelon (97103) v1cpewmB179