Carg26221 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26221
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ethylene-responsive transcription factor, putative
Location	Cucurbita_argyrosperma_scaffold_160 : 180631 .. 181158 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTCCGACCATTCTTCGGAAACCCGGAAACTTCGTCGGCCGGACCAACGTTGGTTCGAGAATTGTTCGGATTTCAATGACCGACCCGGACGCTACGGACTCGTCATCCAGTGACGAAGATGCGGTGAATTTCACGCGCCGCCGTGTGAAGCGGTATGTTGGCGAGATCACCATCGGCACGGCGGCCGGCGAGGGTGGCCGGAAGAAGAAAAAGAAGAAGAAGAAGGGTAACGTGAGGAAGTTTCGCGGCGTCCGGCGGCGGCCGTGGGGGAAATGGGCGGCCGAGATACGAGACTCCGACCGCCGTGTACGGGTGTGGTTGGGTACTTACGACACAGCAGAGGAGGCCGCTATAGCGTACGACAGCGCTGCCGTGAAGCTCCGAGGACCAACAGCTTCAAATCGATTATTTCGGAACCGCCTTTTTTTCTCGAGTACCAAGCAAGTCCCATACCGGAAACTCCATGGGCCGGCGGCGGCTGGGGGGAAACGGTGGGAGCGGCGGAATGCAATAAAAAAGTAG

mRNA sequence

ATGGAAGCTCCGACCATTCTTCGGAAACCCGGAAACTTCGTCGGCCGGACCAACGTTGGTTCGAGAATTGTTCGGATTTCAATGACCGACCCGGACGCTACGGACTCGTCATCCAGTGACGAAGATGCGGTGAATTTCACGCGCCGCCGTGTGAAGCGGTATGTTGGCGAGATCACCATCGGCACGGCGGCCGGCGAGGGTGGCCGGAAGAAGAAAAAGAAGAAGAAGAAGGGTAACGTGAGGAAGTTTCGCGGCGTCCGGCGGCGGCCGTGGGGGAAATGGGCGGCCGAGATACGAGACTCCGACCGCCGTGTACGGGTGTGGTTGGGTACTTACGACACAGCAGAGGAGGCCGCTATAGCGTACGACAGCGCTGCCGTGAAGCTCCGAGGACCAACAGCTTCAAATCGATTATTTCGGAACCGCCTTTTTTTCTCGAGTACCAAGCAAGTCCCATACCGGAAACTCCATGGGCCGGCGGCGGCTGGGGGGAAACGGTGGGAGCGGCGGAATGCAATAAAAAAGTAG

Coding sequence (CDS)

ATGGAAGCTCCGACCATTCTTCGGAAACCCGGAAACTTCGTCGGCCGGACCAACGTTGGTTCGAGAATTGTTCGGATTTCAATGACCGACCCGGACGCTACGGACTCGTCATCCAGTGACGAAGATGCGGTGAATTTCACGCGCCGCCGTGTGAAGCGGTATGTTGGCGAGATCACCATCGGCACGGCGGCCGGCGAGGGTGGCCGGAAGAAGAAAAAGAAGAAGAAGAAGGGTAACGTGAGGAAGTTTCGCGGCGTCCGGCGGCGGCCGTGGGGGAAATGGGCGGCCGAGATACGAGACTCCGACCGCCGTGTACGGGTGTGGTTGGGTACTTACGACACAGCAGAGGAGGCCGCTATAGCGTACGACAGCGCTGCCGTGAAGCTCCGAGGACCAACAGCTTCAAATCGATTATTTCGGAACCGCCTTTTTTTCTCGAGTACCAAGCAAGTCCCATACCGGAAACTCCATGGGCCGGCGGCGGCTGGGGGGAAACGGTGGGAGCGGCGGAATGCAATAAAAAAGTAG

Protein sequence

MEAPTILRKPGNFVGRTNVGSRIVRISMTDPDATDSSSSDEDAVNFTRRRVKRYVGEITIGTAAGEGGRKKKKKKKKGNVRKFRGVRRRPWGKWAAEIRDSDRRVRVWLGTYDTAEEAAIAYDSAAVKLRGPTASNRLFRNRLFFSSTKQVPYRKLHGPAAAGGKRWERRNAIKK

Homology

[Close]

BLAST of Carg26221 vs. NCBI nr
Match: XP_023550597.1 (ethylene-responsive transcription factor CRF4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.7 bits (600), Expect = 1.2e-58
Identity = 130/134 (97.01%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MEAPTILRKPGNFVGRTNVGSRIVRISMTDPDATDSSSSDEDAVNFTRRRVKRYVGEITI 60
           MEAPTILRKPGNF GRTNVGSRIVRISMTDPDATDSSSSDEDAVNFTRRRVKRYVGEITI
Sbjct: 1   MEAPTILRKPGNFAGRTNVGSRIVRISMTDPDATDSSSSDEDAVNFTRRRVKRYVGEITI 60

Query: 61  GTAAGXXXXXXXXXXXXXNVRKFRGVRRRPWGKWAAEIRDSDRRVRVWLGTYDTAEEAAI 120
           GTAAG XXXXXXXXXXX NVRKFRGVRRRPWGKWAAEIRDSDRRVR+WLGTYDTAEEAAI
Sbjct: 61  GTAAGEXXXXXXXXXXXGNVRKFRGVRRRPWGKWAAEIRDSDRRVRMWLGTYDTAEEAAI 120

Query: 121 AYDSAAVKLRGPTA 135
           AYDSAAVKLRGPTA
Sbjct: 121 AYDSAAVKLRGPTA 134

[Close]

BLAST of Carg26221 vs. NCBI nr
Match: XP_022922366.1 (ethylene-responsive transcription factor CRF1-like [Cucurbita moschata])

HSP 1 Score: 231.1 bits (588), Expect = 2.9e-57
Identity = 119/135 (88.15%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 1   MEAPTILRKPGNFVGRTNVGSRIVRISMTDPDATDSSSSDEDAVNFTRRRVKRYVGEITI 60
           MEAPTILRKPGNF GRTNVGSRIVRISMTDPDATDSSSSDEDAVNFTRRRVKRYVGEITI
Sbjct: 1   MEAPTILRKPGNFAGRTNVGSRIVRISMTDPDATDSSSSDEDAVNFTRRRVKRYVGEITI 60

Query: 61  GTAAG-XXXXXXXXXXXXXNVRKFRGVRRRPWGKWAAEIRDSDRRVRVWLGTYDTAEEAA 120
           GTAAG              NVRKFRGVRRRPWGKWAAEIRDSDRRVR+WLGTYDTAEEAA
Sbjct: 61  GTAAGEGGRKNRKKRKMAGNVRKFRGVRRRPWGKWAAEIRDSDRRVRMWLGTYDTAEEAA 120

Query: 121 IAYDSAAVKLRGPTA 135
           IAYDSAAVKLRGPTA
Sbjct: 121 IAYDSAAVKLRGPTA 135

[Close]

BLAST of Carg26221 vs. NCBI nr
Match: XP_022973060.1 (ethylene-responsive transcription factor CRF1-like [Cucurbita maxima])

HSP 1 Score: 223.8 bits (569), Expect = 4.6e-55
Identity = 128/136 (94.12%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 1   MEAPTILRKPGNFVGRTNVGSRIVRISMTDPDATDSSSSDEDAVNFTRRRVKRYVGEITI 60
           MEAPTILRKPGNF  RTNVGSRIVRISMTDPDATDSSSSDEDAVNFTRRRVKRYVGEITI
Sbjct: 1   MEAPTILRKPGNFASRTNVGSRIVRISMTDPDATDSSSSDEDAVNFTRRRVKRYVGEITI 60

Query: 61  GTA--AGXXXXXXXXXXXXXNVRKFRGVRRRPWGKWAAEIRDSDRRVRVWLGTYDTAEEA 120
           GTA    XXXXXXXXXXXX NVRKFRGVRRRPWGKWAAEIRDSDRRVR+WLGTYDTAEEA
Sbjct: 61  GTAXXXXXXXXXXXXXXXXGNVRKFRGVRRRPWGKWAAEIRDSDRRVRMWLGTYDTAEEA 120

Query: 121 AIAYDSAAVKLRGPTA 135
           AIAYDSAAVKLRGPTA
Sbjct: 121 AIAYDSAAVKLRGPTA 136

[Close]

BLAST of Carg26221 vs. NCBI nr
Match: XP_008437573.1 (PREDICTED: ethylene-responsive transcription factor CRF1-like [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 3.7e-36
Identity = 99/144 (68.75%), Postives = 108/144 (75.00%), Query Frame = 0


Query: 1   MEAPTILRK------PGNFVGRTNVGSRIVRISMTDPDATDSSSSDEDAVNFTRRRV--- 60
           ME  TILR+      PGNF GR++ GSRIVRISMTDPDATDSSSSDED +N+ RRRV   
Sbjct: 1   MEVSTILRRKPISEPPGNFHGRSSTGSRIVRISMTDPDATDSSSSDEDTLNYPRRRVXXX 60

Query: 61  -KRYVGEITIGTAAGXXXXXXXXXXXXXNVRKFRGVRRRPWGKWAAEIRDSDRRVRVWLG 120
                          XXXXXXXXXXX  NV KFRGVRRRPWGKWAAEIRD+ RRVR+WLG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXVGNVSKFRGVRRRPWGKWAAEIRDTGRRVRLWLG 120

Query: 121 TYDTAEEAAIAYDSAAVKLRGPTA 135
           TYDTAEEAA+ YDSAA+KLRGP A
Sbjct: 121 TYDTAEEAAMVYDSAALKLRGPAA 144

[Close]

BLAST of Carg26221 vs. NCBI nr
Match: XP_004145980.1 (PREDICTED: ethylene-responsive transcription factor CRF2-like [Cucumis sativus] >KGN49885.1 hypothetical protein Csa_5G139630 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 3.1e-35
Identity = 100/142 (70.42%), Postives = 107/142 (75.35%), Query Frame = 0


Query: 1   MEAPTIL-RKP-GNFVGRTNVGSRIVRISMTDPDATDSSSSDEDAVNFTRRRVKRY---- 60
           ME PTIL RKP     GR++ GSRIVRISM DPDATDSSSSDED +N+T RRVKRY    
Sbjct: 1   MEVPTILRRKPISEPHGRSSTGSRIVRISMADPDATDSSSSDEDTLNYTSRRVKRYEIXX 60

Query: 61  --VGEITIGTAAGXXXXXXXXXXXXXNVRKFRGVRRRPWGKWAAEIRDSDRRVRVWLGTY 120
                        XXXXXXXXXXX  NV KFRGVRRRPWGKWAAEIRDS  RVR+WLGTY
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXVGNVSKFRGVRRRPWGKWAAEIRDSGSRVRLWLGTY 120

Query: 121 DTAEEAAIAYDSAAVKLRGPTA 135
           DTAEEAA+ YDSAA+KLRGP A
Sbjct: 121 DTAEEAAMVYDSAALKLRGPAA 142

[Close]

BLAST of Carg26221 vs. TAIR10
Match: AT4G27950.1 (cytokinin response factor 4)

HSP 1 Score: 124.0 bits (310), Expect = 9.0e-29
Identity = 74/155 (47.74%), Postives = 96/155 (61.94%), Query Frame = 0


Query: 2   EAPTILR---KPGNFVGRTNV--GSRIVRISMTDPDATDSSSSDEDAVNFTRRRVKRYVG 61
           E  T++R   K  +   +T+V   +R+VR+SMTD DATD SSSDE+   F RRRVKR + 
Sbjct: 16  EHKTVIRKYTKKSSMERKTSVRDSARLVRVSMTDRDATD-SSSDEEEFLFPRRRVKRLIN 75

Query: 62  EITI---GTAAGXXXXXXXXXXXXXNV--------------RKFRGVRRRPWGKWAAEIR 121
           EI +    ++ G             NV              +K+RGVR+RPWGKWAAEIR
Sbjct: 76  EIRVEPSSSSTGDVSASPTKDRKRINVDSTVQKPSVSGQNQKKYRGVRQRPWGKWAAEIR 135

Query: 122 DSDRRVRVWLGTYDTAEEAAIAYDSAAVKLRGPTA 135
           D ++R R+WLGT+ TAEEAAI YD+AA+KLRGP A
Sbjct: 136 DPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDA 169

[Close]

BLAST of Carg26221 vs. TAIR10
Match: AT5G53290.1 (cytokinin response factor 3)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-26
Identity = 65/138 (47.10%), Postives = 81/138 (58.70%), Query Frame = 0


Query: 24  VRISMTDPDATDSSS-SDEDAVNFTRRRVKRYVGEITI---------------------- 83
           V I  TDPDATDSSS  DE+   F RRRVKR+V EIT+                      
Sbjct: 39  VSICYTDPDATDSSSDEDEEDFLFPRRRVKRFVNEITVEPSCNNVVTGVSMKDRKRLSSS 98

Query: 84  ----GTAAGXXXXXXXXXXXXXNVRKFRGVRRRPWGKWAAEIRDSDRRVRVWLGTYDTAE 135
                + A               ++KFRGVR+RPWGKWAAEIRD ++R R+WLGT++TAE
Sbjct: 99  SDETQSPASSRQRPNNKVSVSGQIKKFRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAE 158

[Close]

BLAST of Carg26221 vs. TAIR10
Match: AT4G11140.1 (cytokinin response factor 1)

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-21
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 81  RKFRGVRRRPWGKWAAEIRDSDRRVRVWLGTYDTAEEAAIAYDSAAVKLRGPTA 135
           RKFRGVR+RPWGKWAAEIRD  RRVRVWLGT+DTAEEAAI YD+AA++LRGP A
Sbjct: 85  RKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNA 138

[Close]

BLAST of Carg26221 vs. TAIR10
Match: AT1G71130.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 99.8 bits (247), Expect = 1.8e-21
Identity = 63/134 (47.01%), Postives = 78/134 (58.21%), Query Frame = 0


Query: 22  RIVRISMTDPDATDSSSSDED-----AVNFTRRRVKRYVGEITIGTAAGXXXXXXXXXXX 81
           RI+RIS TD +ATD SSSDED       + TRRR KR V EI I  +             
Sbjct: 3   RIIRISFTDAEATD-SSSDEDTEERGGASQTRRRGKRLVKEIVIDPSDSADKLDVCKTRF 62

Query: 82  XXNV-----------RKFRGVRRRPWGKWAAEIR-----DSDRRVRVWLGTYDTAEEAAI 135
              +           +K+RGVR+RPWGKW AEIR        RR R+WLGT++TAEEAA+
Sbjct: 63  KIRIPAEFLKTAKTEKKYRGVRQRPWGKWVAEIRCGRGACKGRRDRLWLGTFNTAEEAAL 122

[Close]

BLAST of Carg26221 vs. TAIR10
Match: AT2G46310.1 (cytokinin response factor 5)

HSP 1 Score: 99.4 bits (246), Expect = 2.4e-21
Identity = 58/125 (46.40%), Postives = 73/125 (58.40%), Query Frame = 0


Query: 22  RIVRISMTDPDATDSSSSDEDAVNFTRRRVKRYVGEITI------------GTAAGXXXX 81
           +IV+I +TDP ATDSSS +E+       RVKRYV EI                   X   
Sbjct: 26  KIVKIIVTDPCATDSSSDEENDNKSVAPRVKRYVDEIRFCDEDDEPKPARKAKXXXXAAA 85

Query: 82  XXXXXXXXXNVRKFRGVRRRPWGKWAAEIRDSDRRVRVWLGTYDTAEEAAIAYDSAAVKL 135
                    +V K+RGVR+RPWGK+AAEIRD   R R+WLGT+ TAEEAAI YD AA+++
Sbjct: 86  AENGGDLVKSVVKYRGVRQRPWGKFAAEIRDPSSRTRLWLGTFATAEEAAIGYDRAAIRI 145

[Close]

BLAST of Carg26221 vs. Swiss-Prot
Match: sp|Q9SUE3|CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana OX=3702 GN=CRF4 PE=1 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 1.6e-27
Identity = 74/155 (47.74%), Postives = 96/155 (61.94%), Query Frame = 0


Query: 2   EAPTILR---KPGNFVGRTNV--GSRIVRISMTDPDATDSSSSDEDAVNFTRRRVKRYVG 61
           E  T++R   K  +   +T+V   +R+VR+SMTD DATD SSSDE+   F RRRVKR + 
Sbjct: 16  EHKTVIRKYTKKSSMERKTSVRDSARLVRVSMTDRDATD-SSSDEEEFLFPRRRVKRLIN 75

Query: 62  EITI---GTAAGXXXXXXXXXXXXXNV--------------RKFRGVRRRPWGKWAAEIR 121
           EI +    ++ G             NV              +K+RGVR+RPWGKWAAEIR
Sbjct: 76  EIRVEPSSSSTGDVSASPTKDRKRINVDSTVQKPSVSGQNQKKYRGVRQRPWGKWAAEIR 135

Query: 122 DSDRRVRVWLGTYDTAEEAAIAYDSAAVKLRGPTA 135
           D ++R R+WLGT+ TAEEAAI YD+AA+KLRGP A
Sbjct: 136 DPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDA 169

[Close]

BLAST of Carg26221 vs. Swiss-Prot
Match: sp|Q9FK12|CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana OX=3702 GN=CRF3 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-25
Identity = 65/138 (47.10%), Postives = 81/138 (58.70%), Query Frame = 0


Query: 24  VRISMTDPDATDSSS-SDEDAVNFTRRRVKRYVGEITI---------------------- 83
           V I  TDPDATDSSS  DE+   F RRRVKR+V EIT+                      
Sbjct: 39  VSICYTDPDATDSSSDEDEEDFLFPRRRVKRFVNEITVEPSCNNVVTGVSMKDRKRLSSS 98

Query: 84  ----GTAAGXXXXXXXXXXXXXNVRKFRGVRRRPWGKWAAEIRDSDRRVRVWLGTYDTAE 135
                + A               ++KFRGVR+RPWGKWAAEIRD ++R R+WLGT++TAE
Sbjct: 99  SDETQSPASSRQRPNNKVSVSGQIKKFRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAE 158

[Close]

BLAST of Carg26221 vs. Swiss-Prot
Match: sp|O04682|PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum OX=4081 GN=PTI6 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.9e-24
Identity = 64/117 (54.70%), Postives = 76/117 (64.96%), Query Frame = 0


Query: 22  RIVRISMTDPDATDSSSSDEDAVNFTRRRVKRYVGEITI----GTAAGXXXXXXXXXXXX 81
           R+VRI +TD DATD  SSD++  N T RRVKR+V EI +     +               
Sbjct: 36  RVVRIILTDADATD--SSDDEGRN-TVRRVKRHVTEINLMPSTKSIGDRKRRSVSPDSDV 95

Query: 82  XNVRKFRGVRRRPWGKWAAEIRDSDRRVRVWLGTYDTAEEAAIAYDSAAVKLRGPTA 135
              +KFRGVR+RPWG+WAAEIRD  R  RVWLGTYDT EEAA+ YD AAVKL+GP A
Sbjct: 96  TRRKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDA 149

[Close]

BLAST of Carg26221 vs. Swiss-Prot
Match: sp|O82503|CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana OX=3702 GN=CRF1 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.5e-20
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 81  RKFRGVRRRPWGKWAAEIRDSDRRVRVWLGTYDTAEEAAIAYDSAAVKLRGPTA 135
           RKFRGVR+RPWGKWAAEIRD  RRVRVWLGT+DTAEEAAI YD+AA++LRGP A
Sbjct: 85  RKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNA 138

[Close]

BLAST of Carg26221 vs. Swiss-Prot
Match: sp|Q9C995|ERF70_ARATH (Ethylene-responsive transcription factor ERF070 OS=Arabidopsis thaliana OX=3702 GN=ERF070 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.3e-20
Identity = 63/134 (47.01%), Postives = 78/134 (58.21%), Query Frame = 0


Query: 22  RIVRISMTDPDATDSSSSDED-----AVNFTRRRVKRYVGEITIGTAAGXXXXXXXXXXX 81
           RI+RIS TD +ATD SSSDED       + TRRR KR V EI I  +             
Sbjct: 3   RIIRISFTDAEATD-SSSDEDTEERGGASQTRRRGKRLVKEIVIDPSDSADKLDVCKTRF 62

Query: 82  XXNV-----------RKFRGVRRRPWGKWAAEIR-----DSDRRVRVWLGTYDTAEEAAI 135
              +           +K+RGVR+RPWGKW AEIR        RR R+WLGT++TAEEAA+
Sbjct: 63  KIRIPAEFLKTAKTEKKYRGVRQRPWGKWVAEIRCGRGACKGRRDRLWLGTFNTAEEAAL 122

[Close]

BLAST of Carg26221 vs. TrEMBL
Match: tr|A0A1S3AUH0|A0A1S3AUH0_CUCME (ethylene-responsive transcription factor CRF1-like OS=Cucumis melo OX=3656 GN=LOC103482947 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.4e-36
Identity = 99/144 (68.75%), Postives = 108/144 (75.00%), Query Frame = 0


Query: 1   MEAPTILRK------PGNFVGRTNVGSRIVRISMTDPDATDSSSSDEDAVNFTRRRV--- 60
           ME  TILR+      PGNF GR++ GSRIVRISMTDPDATDSSSSDED +N+ RRRV   
Sbjct: 1   MEVSTILRRKPISEPPGNFHGRSSTGSRIVRISMTDPDATDSSSSDEDTLNYPRRRVXXX 60

Query: 61  -KRYVGEITIGTAAGXXXXXXXXXXXXXNVRKFRGVRRRPWGKWAAEIRDSDRRVRVWLG 120
                          XXXXXXXXXXX  NV KFRGVRRRPWGKWAAEIRD+ RRVR+WLG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXVGNVSKFRGVRRRPWGKWAAEIRDTGRRVRLWLG 120

Query: 121 TYDTAEEAAIAYDSAAVKLRGPTA 135
           TYDTAEEAA+ YDSAA+KLRGP A
Sbjct: 121 TYDTAEEAAMVYDSAALKLRGPAA 144

[Close]

BLAST of Carg26221 vs. TrEMBL
Match: tr|A0A0A0KJI1|A0A0A0KJI1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139630 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.1e-35
Identity = 100/142 (70.42%), Postives = 107/142 (75.35%), Query Frame = 0


Query: 1   MEAPTIL-RKP-GNFVGRTNVGSRIVRISMTDPDATDSSSSDEDAVNFTRRRVKRY---- 60
           ME PTIL RKP     GR++ GSRIVRISM DPDATDSSSSDED +N+T RRVKRY    
Sbjct: 1   MEVPTILRRKPISEPHGRSSTGSRIVRISMADPDATDSSSSDEDTLNYTSRRVKRYEIXX 60

Query: 61  --VGEITIGTAAGXXXXXXXXXXXXXNVRKFRGVRRRPWGKWAAEIRDSDRRVRVWLGTY 120
                        XXXXXXXXXXX  NV KFRGVRRRPWGKWAAEIRDS  RVR+WLGTY
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXVGNVSKFRGVRRRPWGKWAAEIRDSGSRVRLWLGTY 120

Query: 121 DTAEEAAIAYDSAAVKLRGPTA 135
           DTAEEAA+ YDSAA+KLRGP A
Sbjct: 121 DTAEEAAMVYDSAALKLRGPAA 142

[Close]

BLAST of Carg26221 vs. TrEMBL
Match: tr|A0A251UED8|A0A251UED8_HELAN (Putative cytokinin response factor 4 OS=Helianthus annuus OX=4232 GN=CRF4 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-29
Identity = 80/149 (53.69%), Postives = 93/149 (62.42%), Query Frame = 0


Query: 8   RKPGNFVGRTNVGSRIVRISMTDPDATDSSSSDEDAVNFTRRRVKRYVGEITIGTA---- 67
           RKP N   +T    ++VRISMTDPDATDSSS +ED + F RRRVK+YV E+ I T+    
Sbjct: 35  RKPQN--RQTTSFPKVVRISMTDPDATDSSSDEEDEL-FARRRVKKYVNEVNIQTSCKKL 94

Query: 68  ------------------AGXXXXXXXXXXXXXNVRKFRGVRRRPWGKWAAEIRDSDRRV 127
                             A               VRKFRGVR+RPWGKWAAEIRD  RRV
Sbjct: 95  VTGRKKVGENVLQVRQQKAMKNGGACGVPVVAGGVRKFRGVRQRPWGKWAAEIRDPARRV 154

Query: 128 RVWLGTYDTAEEAAIAYDSAAVKLRGPTA 135
           R+WLGTYDTAEEAA+ YD+AA+KLRGP A
Sbjct: 155 RLWLGTYDTAEEAAMVYDNAAIKLRGPDA 180

[Close]

BLAST of Carg26221 vs. TrEMBL
Match: tr|B9RIM8|B9RIM8_RICCO (Ethylene-responsive transcription factor, putative OS=Ricinus communis OX=3988 GN=RCOM_1580750 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.2e-29
Identity = 76/137 (55.47%), Postives = 90/137 (65.69%), Query Frame = 0


Query: 18  NVGSRIVRISMTDPDATDSSSSDEDAVNFTRRRVKRYVGEITIGTAA------------- 77
           ++  R+VRIS+TDPDATDSSS +ED + F+R+RVKRYV EI+I  A+             
Sbjct: 44  HIPPRVVRISVTDPDATDSSSDEEDEL-FSRQRVKRYVNEISIEAASTKETNLVSSGRKR 103

Query: 78  -------GXXXXXXXXXXXXXNVRKFRGVRRRPWGKWAAEIRDSDRRVRVWLGTYDTAEE 135
                                N RKFRGVR+RPWGKWAAEIRD  RRVR+WLGTYDTAEE
Sbjct: 104 AAANELPNTTQRPLKLNTAHSNGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEE 163

[Close]

BLAST of Carg26221 vs. TrEMBL
Match: tr|A5B445|A5B445_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_16s0050g02400 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.9e-29
Identity = 76/130 (58.46%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 22  RIVRISMTDPDATDSSSSDEDAVNFTRRRVKRYVGEITI---------------GTAAG- 81
           R+VRIS+TDPDATDSSS +ED + F+R+RVKRY  EI I               G  AG 
Sbjct: 37  RVVRISVTDPDATDSSSDEEDEL-FSRQRVKRYTNEINIATVSKSIAPVAGRKRGAGAGE 96

Query: 82  -XXXXXXXXXXXXXNVRKFRGVRRRPWGKWAAEIRDSDRRVRVWLGTYDTAEEAAIAYDS 135
                         N RKFRGVR+RPWGKWAAEIRD  RRVR+WLGTYDTAEEAA+ YD+
Sbjct: 97  MAPCRRPMKVAAPTNGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDN 156

The following BLAST results are available for this feature:

BLAST of Carg26221 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023550597.1	1.2e-58	97.01	ethylene-responsive transcription factor CRF4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022922366.1	2.9e-57	88.15	ethylene-responsive transcription factor CRF1-like [Cucurbita moschata]	[more]
XP_022973060.1	4.6e-55	94.12	ethylene-responsive transcription factor CRF1-like [Cucurbita maxima]	[more]
XP_008437573.1	3.7e-36	68.75	PREDICTED: ethylene-responsive transcription factor CRF1-like [Cucumis melo]	[more]
XP_004145980.1	3.1e-35	70.42	PREDICTED: ethylene-responsive transcription factor CRF2-like [Cucumis sativus] ...	[more]

BLAST of Carg26221 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G27950.1	9.0e-29	47.74	cytokinin response factor 4	[more]
AT5G53290.1	1.1e-26	47.10	cytokinin response factor 3	[more]
AT4G11140.1	1.4e-21	83.33	cytokinin response factor 1	[more]
AT1G71130.1	1.8e-21	47.01	Integrase-type DNA-binding superfamily protein	[more]
AT2G46310.1	2.4e-21	46.40	cytokinin response factor 5	[more]

BLAST of Carg26221 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SUE3\|CRF4_ARATH	1.6e-27	47.74	Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q9FK12\|CRF3_ARATH	2.0e-25	47.10	Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|O04682\|PTI6_SOLLC	4.9e-24	54.70	Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicu...	[more]
sp\|O82503\|CRF1_ARATH	2.5e-20	83.33	Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q9C995\|ERF70_ARATH	3.3e-20	47.01	Ethylene-responsive transcription factor ERF070 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg26221 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AUH0\|A0A1S3AUH0_CUCME	2.4e-36	68.75	ethylene-responsive transcription factor CRF1-like OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A0A0KJI1\|A0A0A0KJI1_CUCSA	2.1e-35	70.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139630 PE=4 SV=1	[more]
tr\|A0A251UED8\|A0A251UED8_HELAN	1.3e-29	53.69	Putative cytokinin response factor 4 OS=Helianthus annuus OX=4232 GN=CRF4 PE=4 S...	[more]
tr\|B9RIM8\|B9RIM8_RICCO	2.2e-29	55.47	Ethylene-responsive transcription factor, putative OS=Ricinus communis OX=3988 G...	[more]
tr\|A5B445\|A5B445_VITVI	4.9e-29	58.46	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_16s0050g02400 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR016177	DNA-bd_dom_sf
IPR036955	AP2/ERF_dom_sf
IPR001471	AP2/ERF_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26221-RA	Carg26221-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 83..94 score: 69.39 coord: 105..121 score: 68.88
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 82..141 e-value: 2.5E-28 score: 110.1
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 82..131 e-value: 3.5E-14 score: 52.7
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 82..146 score: 21.918
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 82..135 e-value: 2.17561E-24 score: 90.4087
IPR036955	AP2/ERF domain superfamily	GENE3D	G3DSA:3.30.730.10		coord: 81..138 e-value: 3.4E-26 score: 92.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..175
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 19..135
None	No IPR available	PANTHER	PTHR31194:SF43	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF3-RELATED	coord: 19..135
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	SSF54171	DNA-binding domain	coord: 82..134

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26221	Cla004912	Watermelon (97103) v1	carwmB0294
Carg26221	Csa5G139630	Cucumber (Chinese Long) v2	carcuB0327
Carg26221	MELO3C005867	Melon (DHL92) v3.5.1	carmeB0302
Carg26221	ClCG01G000610	Watermelon (Charleston Gray)	carwcgB0294
Carg26221	CSPI05G03380	Wild cucumber (PI 183967)	carcpiB0333
Carg26221	Cucsa.201950	Cucumber (Gy14) v1	carcgyB0352
Carg26221	CmaCh02G010990	Cucurbita maxima (Rimu)	carcmaB0417
Carg26221	CmaCh15G010430	Cucurbita maxima (Rimu)	carcmaB0416
Carg26221	CmoCh02G011250	Cucurbita moschata (Rifu)	carcmoB0412
Carg26221	CmoCh15G011020	Cucurbita moschata (Rifu)	carcmoB0411
Carg26221	Lsi09G000420	Bottle gourd (USVL1VR-Ls)	carlsiB276
Carg26221	Cp4.1LG13g03010	Cucurbita pepo (Zucchini)	carcpeB0417
Carg26221	Cp4.1LG05g06240	Cucurbita pepo (Zucchini)	carcpeB0418
Carg26221	CsGy5G000620	Cucumber (Gy14) v2	carcgybB0313
Carg26221	MELO3C005867.2	Melon (DHL92) v3.6.1	carmedB0313
Carg26221	CsaV3_5G000710	Cucumber (Chinese Long) v3	carcucB0333
Carg26221	Cla97C01G000670	Watermelon (97103) v2	carwmbB0310
Carg26221	Bhi12G000538	Wax gourd	carwgoB0388

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg26221	Carg14033	Silver-seed gourd	carcarB329

The following block(s) are covering this gene:

None