Cp4.1LG05g06240 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g06240
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG05 : 3755259 .. 3756239 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGTTTTTGTAAAATGTTTTTCAAAGTGATTATGAGAAACATTTGAATATTTTTATAATATCTCAATCTTTTAGTTCTCTTTTTCCCTTTATTCCTTTTTTAAAATCTCTAGAATGCAAATTCAGAGATTCCGCCATTAACCCTCAGCTCTGAAACTACCATGGAAGTTCAAACCATTCTTTGCCCAAAACCCACCTCGGAACCACCGGGAAACACCGCTGCTTCAAGAATCGTAAGGATCTCGATGATCGATCCGGAGGCCACCGACTCCTCATCCAGCGACGAAGAAGCTGCGAGTCTCACACGCCGCCGTGTGAAGCGTTACATTCGCGAGATCACCATCGGGACGCCGCCGATTGGCGGCGGTGGCCGAAAGATGATAACGAAGAAGAAGAAGAATAAAAAGACGGCCATGGGTAATGTGAAGAAGTTCCGCGGCGTCCGGCGGCGTCCGTGGGGGAAATGGGCGGCGGAGATACGGGACCCCGGTCGCCGTGTACGGATGTGGTTGGGGACGTACGACACGGCGGAGGAGGCCGCCATGGTGTACAACAGAGCCGCCGAGAAGCTCCGGGAATCCGCCGCTTCAACAAATTTCCTCACTCCTCTGCCGCTAACAGAGCCTGCCATAAAGCCATCGTCTCCGACGAACCTTTCATCTCCGACGTCAGTCCTCCAATACAGAACCCACTCCACCGATTTCTCACCGCCATTCCAGACCGCCGCAACTGGTGGCGCTGCCGAAGAATTCCCGGCTGTTGATTTCCCCTTCTTCGACGATATATCCAAATCGATTGTTTTTGAACCTCCTCTGCTTCTCGAGTACGAAACATCTCTAATACAGGAAATTCCATGGTTCGGCTGTGACTCCAGCGGCGGTGGAGACGACGGCGACCCTGTTCCAGCAGTAAGAGGAGAAGATCATGATTATTTTGAAGAAATTTTGATGGGTTCGGATCCTTTGGTGGTTCTGTAG

mRNA sequence

ATGGATAAGATTCCGCCATTAACCCTCAGCTCTGAAACTACCATGGAAGTTCAAACCATTCTTTGCCCAAAACCCACCTCGGAACCACCGGGAAACACCGCTGCTTCAAGAATCGTAAGGATCTCGATGATCGATCCGGAGGCCACCGACTCCTCATCCAGCGACGAAGAAGCTGCGAGTCTCACACGCCGCCGTGTGAAGCGTTACATTCGCGAGATCACCATCGGGACGCCGCCGATTGGCGGCGTCCTCCAATACAGAACCCACTCCACCGATTTCTCACCGCCATTCCAGACCGCCGCAACTGGTGGCGCTGCCGAAGAATTCCCGGCTGTTGATTTCCCCTTCTTCGACGATATATCCAAATCGATTGTTTTTGAACCTCCTCTGCTTCTCGAGTACGAAACATCTCTAATACAGGAAATTCCATGGTTCGGCTGTGACTCCAGCGGCGGTGGAGACGACGGCGACCCTGTTCCAGCAGTAAGAGGAGAAGATCATGATTATTTTGAAGAAATTTTGATGGGTTCGGATCCTTTGGTGGTTCTGTAG

Coding sequence (CDS)

ATGGATAAGATTCCGCCATTAACCCTCAGCTCTGAAACTACCATGGAAGTTCAAACCATTCTTTGCCCAAAACCCACCTCGGAACCACCGGGAAACACCGCTGCTTCAAGAATCGTAAGGATCTCGATGATCGATCCGGAGGCCACCGACTCCTCATCCAGCGACGAAGAAGCTGCGAGTCTCACACGCCGCCGTGTGAAGCGTTACATTCGCGAGATCACCATCGGGACGCCGCCGATTGGCGGCGTCCTCCAATACAGAACCCACTCCACCGATTTCTCACCGCCATTCCAGACCGCCGCAACTGGTGGCGCTGCCGAAGAATTCCCGGCTGTTGATTTCCCCTTCTTCGACGATATATCCAAATCGATTGTTTTTGAACCTCCTCTGCTTCTCGAGTACGAAACATCTCTAATACAGGAAATTCCATGGTTCGGCTGTGACTCCAGCGGCGGTGGAGACGACGGCGACCCTGTTCCAGCAGTAAGAGGAGAAGATCATGATTATTTTGAAGAAATTTTGATGGGTTCGGATCCTTTGGTGGTTCTGTAG

Protein sequence

MDKIPPLTLSSETTMEVQTILCPKPTSEPPGNTAASRIVRISMIDPEATDSSSSDEEAASLTRRRVKRYIREITIGTPPIGGVLQYRTHSTDFSPPFQTAATGGAAEEFPAVDFPFFDDISKSIVFEPPLLLEYETSLIQEIPWFGCDSSGGGDDGDPVPAVRGEDHDYFEEILMGSDPLVVL
Homology
[Close]
BLAST of Cp4.1LG05g06240 vs. TrEMBL
Match: A0A0A0KJI1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139630 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.6e-15
Identity = 54/104 (51.92%), Postives = 64/104 (61.54%), Query Frame = 1 

Query: 86  YRTHSTDFSPPFQTAATGGAAEEFPAVDF-PFFDDISKSIVFEPPLLLEYETSLIQEIPW 145
           +RTH T+ S  ++      A  E P VD+ PF DDI KSI+ E PL  EY+++LI E PW
Sbjct: 173 HRTHFTECSSSYR------AVIESPVVDYCPFSDDIFKSILLESPLFPEYQSTLITEAPW 232

Query: 146 FGCDSSGGGDDGDPVPAVRG-----EDHDYFEEILMGSDPLVVL 184
              D+ GG   GD V A  G     EDHD FEEILMGSDPLVVL
Sbjct: 233 I--DAGGGARSGDLVVAAAGSDERVEDHDCFEEILMGSDPLVVL 268

[Close]
BLAST of Cp4.1LG05g06240 vs. NCBI nr
Match: gi|449456486|ref|XP_004145980.1| (PREDICTED: ethylene-responsive transcription factor CRF2-like [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 9.5e-15
Identity = 54/104 (51.92%), Postives = 64/104 (61.54%), Query Frame = 1 

Query: 86  YRTHSTDFSPPFQTAATGGAAEEFPAVDF-PFFDDISKSIVFEPPLLLEYETSLIQEIPW 145
           +RTH T+ S  ++      A  E P VD+ PF DDI KSI+ E PL  EY+++LI E PW
Sbjct: 173 HRTHFTECSSSYR------AVIESPVVDYCPFSDDIFKSILLESPLFPEYQSTLITEAPW 232

Query: 146 FGCDSSGGGDDGDPVPAVRG-----EDHDYFEEILMGSDPLVVL 184
              D+ GG   GD V A  G     EDHD FEEILMGSDPLVVL
Sbjct: 233 I--DAGGGARSGDLVVAAAGSDERVEDHDCFEEILMGSDPLVVL 268

[Close]
BLAST of Cp4.1LG05g06240 vs. NCBI nr
Match: gi|659074380|ref|XP_008437573.1| (PREDICTED: ethylene-responsive transcription factor CRF1-like [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 52/102 (50.98%), Postives = 60/102 (58.82%), Query Frame = 1 

Query: 86  YRTHSTDFSPPFQTAATGGAAEEFPAVDFPFFDDISKSIVFEPPLLLEYETSLIQEIPWF 145
           YRT  T+ S  ++      A  + P VD PF DDI KS V E PL  EY+++LI E PW 
Sbjct: 175 YRTQFTECSSSYR------AVNDSPVVDCPFSDDIFKSSVLESPLFPEYQSTLITEAPWI 234

Query: 146 GCDSSGGGDDGDPVPAVRG----EDHDYFEEILMGSDPLVVL 184
             D+ GG    D V A       EDHDYFEEILMGSDPLVVL
Sbjct: 235 --DADGGARSSDLVAAAGSVEIVEDHDYFEEILMGSDPLVVL 268

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g06240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g06240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJI1_CUCSA6.6e-1551.92Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139630 PE=4 SV=1[more]
BLAST of Cp4.1LG05g06240 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g06240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449456486|ref|XP_004145980.1|9.5e-1551.92PREDICTED: ethylene-responsive transcription factor CRF2-like [Cucumis sativus][more]
gi|659074380|ref|XP_008437573.1|1.2e-1450.98PREDICTED: ethylene-responsive transcription factor CRF1-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g06240.1Cp4.1LG05g06240.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g06240CmaCh02G010990Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g06240CmaCh15G010430Cucurbita maxima (Rimu)cmacpeB330
Cp4.1LG05g06240CmoCh15G011020Cucurbita moschata (Rifu)cmocpeB293
Cp4.1LG05g06240CmoCh02G011250Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g06240Cla004912Watermelon (97103) v1cpewmB708
Cp4.1LG05g06240ClCG01G000610Watermelon (Charleston Gray)cpewcgB635
Cp4.1LG05g06240Lsi09G000420Bottle gourd (USVL1VR-Ls)cpelsiB579
Cp4.1LG05g06240MELO3C005867.2Melon (DHL92) v3.6.1cpemedB779
Cp4.1LG05g06240CsaV3_5G000710Cucumber (Chinese Long) v3cpecucB0910
Cp4.1LG05g06240Bhi12G000538Wax gourdcpewgoB0916
Cp4.1LG05g06240CsGy5G000620Cucumber (Gy14) v2cgybcpeB686
Cp4.1LG05g06240Carg14033Silver-seed gourdcarcpeB0718
Cp4.1LG05g06240Carg26221Silver-seed gourdcarcpeB0418
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG05g06240Cp4.1LG13g03010Cucurbita pepo (Zucchini)cpecpeB227
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g06240Melon (DHL92) v3.6.1cpemedB832
Cp4.1LG05g06240Melon (DHL92) v3.6.1cpemedB835
Cp4.1LG05g06240Silver-seed gourdcarcpeB0765
Cp4.1LG05g06240Silver-seed gourdcarcpeB1377
Cp4.1LG05g06240Wax gourdcpewgoB0928
Cp4.1LG05g06240Cucurbita pepo (Zucchini)cpecpeB057
Cp4.1LG05g06240Cucurbita pepo (Zucchini)cpecpeB245
Cp4.1LG05g06240Cucurbita pepo (Zucchini)cpecpeB479
Cp4.1LG05g06240Cucumber (Gy14) v1cgycpeB0576
Cp4.1LG05g06240Cucumber (Gy14) v1cgycpeB0685
Cp4.1LG05g06240Cucurbita maxima (Rimu)cmacpeB291
Cp4.1LG05g06240Cucurbita maxima (Rimu)cmacpeB358
Cp4.1LG05g06240Cucurbita maxima (Rimu)cmacpeB453
Cp4.1LG05g06240Cucurbita moschata (Rifu)cmocpeB322
Cp4.1LG05g06240Cucurbita moschata (Rifu)cmocpeB414
Cp4.1LG05g06240Wild cucumber (PI 183967)cpecpiB722
Cp4.1LG05g06240Wild cucumber (PI 183967)cpecpiB733
Cp4.1LG05g06240Cucumber (Chinese Long) v2cpecuB720
Cp4.1LG05g06240Cucumber (Chinese Long) v2cpecuB730
Cp4.1LG05g06240Bottle gourd (USVL1VR-Ls)cpelsiB626
Cp4.1LG05g06240Watermelon (Charleston Gray)cpewcgB677
Cp4.1LG05g06240Watermelon (Charleston Gray)cpewcgB678
Cp4.1LG05g06240Watermelon (97103) v1cpewmB704
Cp4.1LG05g06240Watermelon (97103) v1cpewmB705
Cp4.1LG05g06240Melon (DHL92) v3.5.1cpemeB651
Cp4.1LG05g06240Melon (DHL92) v3.5.1cpemeB698
Cp4.1LG05g06240Melon (DHL92) v3.5.1cpemeB701
Cp4.1LG05g06240Cucumber (Gy14) v2cgybcpeB428