Cp4.1LG12g09920 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG12g09920
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHumj1 family protein
LocationCp4.1LG12 : 9768005 .. 9769210 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGTGTGTTCGAGAGGGAGCTTTCGTTTCGATCTTTAATTAATGCGTTTCTGAATCCATAAATTTGTCTTTATGATTAATGCCTTGCTTTCTAAATTCTCTCTCCCTCCCATACGGACTCCATCCGCCCTTCCCAGGATTCGGATTCCAAACCCTAGAATTAATTAATTTCTTACTTCCTTTTATCGTCCGCCATTTTCAGTTTTCTTTTCGTACGACCTCAGAAAAAGCTTTCTGGATTTCGGATTCCCTTGCCTTTCTTTCTTTCTTTCTTTTGTTTCTTTTGTTTCATTTTCTCCTCGGGAACACTAAATTAACTTTTCCATTCTATTCCGTTTGACTCTCTAGACTGGGGAAGTCTACTATAGAAATTGCCGGACCGGAATGAGAGTAACGGAAGATCCGAGGACAGCGGAAGCACACAGCCGAGATTTATACTCGGAAGATGACGACGACAACGATGCGGATGAGAGCTCGTCGGACGACGGCAGCGAGGAGTCGTGTTCTTCGTCTTCGTACGGTGCTAGTAGGCAGCAATACCCGCCGGGAAAGGAGGAGGACGTGCTAGTGGTTGCCGGATGCAAGAGATGCTTCATGTACTTCATGGTGCCGAAACAGGTCGAAGATTGCCCCAAATGCAGCAGCAGTCGTCTTGTTCATTTCGATCGTTCCGAGGACAGTAATGGCTTCCCATAAAAGAACGAACCACAATTTTTTAAAAATCAAACTGTGTTTGGGTTAATTCTGACATAATCATTGATTCTTTCTCTTTGGATTAATTTGGTGAGCAAAGGCAAATGGGGTTTAATTTCGTAGCTCGATGTATACGCCTCTCTCCCTCCCTTTGACGTTGTTTTATGAGTTTTAATTGTATGGATATATATTTTACAAAGCTTGAATTGAGAAGCTAAAGAAATAGAAAAGGAATCTGGGGGGGGCCGCCATGGATGTGTGAATGGGAGATGCAGAAAATATGCAGGCATGAATGGGATGATGGTCAACGACTCAAACGAAGAAGAAGGAATAACATTTTGCTCGTGAAGACAGCGACTCATTGCTTTCATTATTCCACAACCCTCTCTGATTGAATCGTACGCAATTAATTTTAATTTTTATGTTGTTTTTTTTTTATATGAATAATAATGTAACGAAATAATTAGAATGGAAATGAAAATGAGACATCCCACACACAACATATGCACA

mRNA sequence

ATGATTACTGGGGAAGTCTACTATAGAAATTGCCGGACCGGAATGAGAGTAACGGAAGATCCGAGGACAGCGGAAGCACACAGCCGAGATTTATACTCGGAAGATGACGACGACAACGATGCGGATGAGAGCTCGTCGGACGACGGCAGCGAGGAGTCGTGTTCTTCGTCTTCGTACGGTGCTAGTAGGCAGCAATACCCGCCGGGAAAGGAGGAGGACGTGCTAGTGGTTGCCGGATGCAAGAGATGCTTCATGTACTTCATGGTGCCGAAACAGGTCGAAGATTGCCCCAAATGCAGCAGCAGTCGTCTTGTTCATTTCGATCGTTCCGAGGACAGTAATGGCTTCCCATAAAAGAACGAACCACAATTTTTTAAAAATCAAACTGTGTTTGGGTTAATTCTGACATAATCATTGATTCTTTCTCTTTGGATTAATTTGGTGAGCAAAGGCAAATGGGGTTTAATTTCGTAGCTCGATGTATACGCCTCTCTCCCTCCCTTTGACGTTGTTTTATGAGTTTTAATTGTATGGATATATATTTTACAAAGCTTGAATTGAGAAGCTAAAGAAATAGAAAAGGAATCTGGGGGGGGCCGCCATGGATGTGTGAATGGGAGATGCAGAAAATATGCAGGCATGAATGGGATGATGGTCAACGACTCAAACGAAGAAGAAGGAATAACATTTTGCTCGTGAAGACAGCGACTCATTGCTTTCATTATTCCACAACCCTCTCTGATTGAATCGTACGCAATTAATTTTAATTTTTATGTTGTTTTTTTTTTATATGAATAATAATGTAACGAAATAATTAGAATGGAAATGAAAATGAGACATCCCACACACAACATATGCACA

Coding sequence (CDS)

ATGATTACTGGGGAAGTCTACTATAGAAATTGCCGGACCGGAATGAGAGTAACGGAAGATCCGAGGACAGCGGAAGCACACAGCCGAGATTTATACTCGGAAGATGACGACGACAACGATGCGGATGAGAGCTCGTCGGACGACGGCAGCGAGGAGTCGTGTTCTTCGTCTTCGTACGGTGCTAGTAGGCAGCAATACCCGCCGGGAAAGGAGGAGGACGTGCTAGTGGTTGCCGGATGCAAGAGATGCTTCATGTACTTCATGGTGCCGAAACAGGTCGAAGATTGCCCCAAATGCAGCAGCAGTCGTCTTGTTCATTTCGATCGTTCCGAGGACAGTAATGGCTTCCCATAA

Protein sequence

MITGEVYYRNCRTGMRVTEDPRTAEAHSRDLYSEDDDDNDADESSSDDGSEESCSSSSYGASRQQYPPGKEEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSEDSNGFP
BLAST of Cp4.1LG12g09920 vs. TrEMBL
Match: A0A0A0KF89_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091940 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.7e-48
Identity = 100/115 (86.96%), Postives = 103/115 (89.57%), Query Frame = 1

Query: 3   TGEVYYRNCRTGMRVTEDPRTAEAHSRDLYSEDDDDNDADESSSDDGSEESCSSSSYGAS 62
           TGEVYYRNCRTGM+V EDPRTA AHSRDLY EDDD  D DESSSD GSEESCSSSSYG S
Sbjct: 88  TGEVYYRNCRTGMKVKEDPRTAVAHSRDLYLEDDDGEDGDESSSDGGSEESCSSSSYGGS 147

Query: 63  RQQYPPGKEEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSEDSNGFP 118
           RQQYP    EDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRS++SNGFP
Sbjct: 148 RQQYPAENVEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSDESNGFP 202

BLAST of Cp4.1LG12g09920 vs. TrEMBL
Match: A0A067JTH2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23118 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.7e-22
Identity = 65/116 (56.03%), Postives = 80/116 (68.97%), Query Frame = 1

Query: 3   TGEVYYRNCRTGMRVTEDPRTAEAHSRDLYSEDDDDNDADESSSDDGSEESCSSSSYGAS 62
           TGE+YY N R GM+  EDPR  + ++ D YSEDD   D++ESSS+        SS   +S
Sbjct: 82  TGEIYYINWRNGMKAKEDPRVKQEYNGDFYSEDDSSYDSEESSSE--------SSPPSSS 141

Query: 63  RQQYPPGKEED-VLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSEDSNGFP 118
           R+ Y   ++ED VLVVAGCK C MYFMVPKQVEDCPKC + +L+HFDRSE  NG P
Sbjct: 142 REHYRVQQKEDHVLVVAGCKSCLMYFMVPKQVEDCPKC-NGQLLHFDRSE--NGSP 186

BLAST of Cp4.1LG12g09920 vs. TrEMBL
Match: B9RFX1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437780 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.6e-22
Identity = 64/115 (55.65%), Postives = 76/115 (66.09%), Query Frame = 1

Query: 3   TGEVYYRNCRTGMRVTEDPRTAEAHSRDLYSEDDDDNDADESSSDDGSEESCSSSSYGAS 62
           TGE+YY N R GM+  EDPR  + +S D YSED+   D         SEES S SS  +S
Sbjct: 94  TGEIYYINWRNGMKAKEDPRVTQEYSGDYYSEDESSYD---------SEESSSESSPPSS 153

Query: 63  RQQYP---PGKEEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSEDSN 115
           R+ Y      KE+ VLVVAGCK C MYFMVPKQVEDCPKC + +L+HFDRSED +
Sbjct: 154 REHYTSRGEQKEDHVLVVAGCKSCLMYFMVPKQVEDCPKC-NGQLLHFDRSEDGS 198

BLAST of Cp4.1LG12g09920 vs. TrEMBL
Match: B9GZB4_POPTR (Humj1 family protein OS=Populus trichocarpa GN=POPTR_0003s16420g PE=4 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 8.0e-22
Identity = 65/117 (55.56%), Postives = 79/117 (67.52%), Query Frame = 1

Query: 3   TGEVYYRNCRTGMRVTEDPRTAEAHSRDLYSEDDDDNDADESSSDDGSEESCSSSSYGAS 62
           TGE+YY N R GM+  EDPR  + ++ D YSEDD   D++ESSS+         SS  +S
Sbjct: 78  TGEIYYINWRNGMKAREDPRITQDYNGDFYSEDDSSYDSEESSSE---------SSPPSS 137

Query: 63  RQQYPP--GKEEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSEDSNGFP 118
           R+ +     KE+ VLVVAGCK CFMYFMVPKQVEDCPKC   +L+HFDRSE  NG P
Sbjct: 138 REHFNNRLEKEDHVLVVAGCKSCFMYFMVPKQVEDCPKC-DGQLLHFDRSE--NGSP 182

BLAST of Cp4.1LG12g09920 vs. TrEMBL
Match: A9PEE5_POPTR (Humj1 family protein OS=Populus trichocarpa GN=POPTR_0001s13290g PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 8.0e-22
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1

Query: 3   TGEVYYRNCRTGMRVTEDPRTAEAHSRDLYSEDDDDNDADESSSDDGSEESCSSSSYGAS 62
           TGEVYY N R GM+  EDPR  + ++ D YSEDD   D++ESSS+         SS  +S
Sbjct: 82  TGEVYYINWRNGMKAREDPRITQEYNGDFYSEDDSSYDSEESSSE---------SSPSSS 141

Query: 63  RQQYPPG--KEEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSEDSNGFP 118
           R+ Y     KE+ VLVVAGCK CFMYFMVPKQVE CPKC + +L+HFDRSE  NG P
Sbjct: 142 REHYHNRLQKEDHVLVVAGCKSCFMYFMVPKQVEVCPKC-NGQLLHFDRSE--NGSP 186

BLAST of Cp4.1LG12g09920 vs. TAIR10
Match: AT2G33510.2 (AT2G33510.2 unknown protein)

HSP 1 Score: 93.6 bits (231), Expect = 8.7e-20
Identity = 58/119 (48.74%), Postives = 73/119 (61.34%), Query Frame = 1

Query: 3   TGEVYYRNCRTGMRVTEDPR---TAEAHSRDLY----SEDDDDNDADESSSDDGSEESCS 62
           TGE+YY N + GMRV EDPR    A+  S D Y    SE+D      E SS + S  S  
Sbjct: 86  TGEIYYINWKNGMRVKEDPRKVMNADPDSGDSYGTVCSEEDSSYYDSEESSSESSPSSRE 145

Query: 63  SSSYGASRQQYPPGKEEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSEDSN 115
           +       ++    +EEDVLVVAGCK CFMYFMVPK VEDCPKC +++L+HFDR   ++
Sbjct: 146 NHKEEEEEEEEEEEEEEDVLVVAGCKACFMYFMVPKLVEDCPKC-AAQLLHFDRPHSAS 203

BLAST of Cp4.1LG12g09920 vs. TAIR10
Match: AT1G28070.1 (AT1G28070.1 unknown protein)

HSP 1 Score: 87.0 bits (214), Expect = 8.2e-18
Identity = 56/113 (49.56%), Postives = 76/113 (67.26%), Query Frame = 1

Query: 3   TGEVYYRNCRTGMRVTEDPRTAEAHSRDLYSEDDDDNDA------DESSSDDGSEESCSS 62
           TGE+YYR+  +GMRV EDPR  ++ SR  Y++      +      +E SS   SEES S 
Sbjct: 62  TGEIYYRSWNSGMRVKEDPR--KSMSRGNYADQSSGESSGTVFSSEEVSSYYESEESSSE 121

Query: 63  SSYGASRQQYPPGKEEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDR 110
           SS  +SR+ +   ++EDVLVVAGCK C MYFMVPK  +DCPKC +++L+HFD+
Sbjct: 122 SS-PSSRKYHKEEQDEDVLVVAGCKACLMYFMVPKLFKDCPKC-ATQLLHFDQ 170

BLAST of Cp4.1LG12g09920 vs. NCBI nr
Match: gi|449445588|ref|XP_004140554.1| (PREDICTED: uncharacterized protein LOC101221916 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 2.4e-48
Identity = 100/115 (86.96%), Postives = 103/115 (89.57%), Query Frame = 1

Query: 3   TGEVYYRNCRTGMRVTEDPRTAEAHSRDLYSEDDDDNDADESSSDDGSEESCSSSSYGAS 62
           TGEVYYRNCRTGM+V EDPRTA AHSRDLY EDDD  D DESSSD GSEESCSSSSYG S
Sbjct: 88  TGEVYYRNCRTGMKVKEDPRTAVAHSRDLYLEDDDGEDGDESSSDGGSEESCSSSSYGGS 147

Query: 63  RQQYPPGKEEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSEDSNGFP 118
           RQQYP    EDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRS++SNGFP
Sbjct: 148 RQQYPAENVEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSDESNGFP 202

BLAST of Cp4.1LG12g09920 vs. NCBI nr
Match: gi|659119898|ref|XP_008459902.1| (PREDICTED: uncharacterized protein LOC103498882 [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 2.7e-47
Identity = 100/115 (86.96%), Postives = 104/115 (90.43%), Query Frame = 1

Query: 3   TGEVYYRNCRTGMRVTEDPRTAEAHSRDLYSEDDDDNDADESSSDDGSEESCSSSSYGAS 62
           TGEVYYRNCRTGM+V EDPRTA AHSRDLYSEDD + D DESSSD GSEESCSSSSYG S
Sbjct: 88  TGEVYYRNCRTGMKVKEDPRTAVAHSRDLYSEDDGE-DGDESSSDGGSEESCSSSSYGGS 147

Query: 63  RQQYPPGKEEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSEDSNGFP 118
           RQQYP    EDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRS++SNGFP
Sbjct: 148 RQQYPAENVEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSDESNGFP 201

BLAST of Cp4.1LG12g09920 vs. NCBI nr
Match: gi|802754658|ref|XP_012088745.1| (PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas])

HSP 1 Score: 112.8 bits (281), Expect = 3.9e-22
Identity = 65/116 (56.03%), Postives = 80/116 (68.97%), Query Frame = 1

Query: 3   TGEVYYRNCRTGMRVTEDPRTAEAHSRDLYSEDDDDNDADESSSDDGSEESCSSSSYGAS 62
           TGE+YY N R GM+  EDPR  + ++ D YSEDD   D++ESSS+        SS   +S
Sbjct: 82  TGEIYYINWRNGMKAKEDPRVKQEYNGDFYSEDDSSYDSEESSSE--------SSPPSSS 141

Query: 63  RQQYPPGKEED-VLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSEDSNGFP 118
           R+ Y   ++ED VLVVAGCK C MYFMVPKQVEDCPKC + +L+HFDRSE  NG P
Sbjct: 142 REHYRVQQKEDHVLVVAGCKSCLMYFMVPKQVEDCPKC-NGQLLHFDRSE--NGSP 186

BLAST of Cp4.1LG12g09920 vs. NCBI nr
Match: gi|255543154|ref|XP_002512640.1| (PREDICTED: uncharacterized protein LOC8275022 [Ricinus communis])

HSP 1 Score: 112.5 bits (280), Expect = 5.1e-22
Identity = 64/115 (55.65%), Postives = 76/115 (66.09%), Query Frame = 1

Query: 3   TGEVYYRNCRTGMRVTEDPRTAEAHSRDLYSEDDDDNDADESSSDDGSEESCSSSSYGAS 62
           TGE+YY N R GM+  EDPR  + +S D YSED+   D         SEES S SS  +S
Sbjct: 94  TGEIYYINWRNGMKAKEDPRVTQEYSGDYYSEDESSYD---------SEESSSESSPPSS 153

Query: 63  RQQYP---PGKEEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSEDSN 115
           R+ Y      KE+ VLVVAGCK C MYFMVPKQVEDCPKC + +L+HFDRSED +
Sbjct: 154 REHYTSRGEQKEDHVLVVAGCKSCLMYFMVPKQVEDCPKC-NGQLLHFDRSEDGS 198

BLAST of Cp4.1LG12g09920 vs. NCBI nr
Match: gi|224053539|ref|XP_002297863.1| (Humj1 family protein [Populus trichocarpa])

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-21
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1

Query: 3   TGEVYYRNCRTGMRVTEDPRTAEAHSRDLYSEDDDDNDADESSSDDGSEESCSSSSYGAS 62
           TGEVYY N R GM+  EDPR  + ++ D YSEDD   D++ESSS+         SS  +S
Sbjct: 82  TGEVYYINWRNGMKAREDPRITQEYNGDFYSEDDSSYDSEESSSE---------SSPSSS 141

Query: 63  RQQYPPG--KEEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSEDSNGFP 118
           R+ Y     KE+ VLVVAGCK CFMYFMVPKQVE CPKC + +L+HFDRSE  NG P
Sbjct: 142 REHYHNRLQKEDHVLVVAGCKSCFMYFMVPKQVEVCPKC-NGQLLHFDRSE--NGSP 186

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KF89_CUCSA1.7e-4886.96Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091940 PE=4 SV=1[more]
A0A067JTH2_JATCU2.7e-2256.03Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23118 PE=4 SV=1[more]
B9RFX1_RICCO3.6e-2255.65Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437780 PE=4 SV=1[more]
B9GZB4_POPTR8.0e-2255.56Humj1 family protein OS=Populus trichocarpa GN=POPTR_0003s16420g PE=4 SV=2[more]
A9PEE5_POPTR8.0e-2256.41Humj1 family protein OS=Populus trichocarpa GN=POPTR_0001s13290g PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT2G33510.28.7e-2048.74 unknown protein[more]
AT1G28070.18.2e-1849.56 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449445588|ref|XP_004140554.1|2.4e-4886.96PREDICTED: uncharacterized protein LOC101221916 [Cucumis sativus][more]
gi|659119898|ref|XP_008459902.1|2.7e-4786.96PREDICTED: uncharacterized protein LOC103498882 [Cucumis melo][more]
gi|802754658|ref|XP_012088745.1|3.9e-2256.03PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas][more]
gi|255543154|ref|XP_002512640.1|5.1e-2255.65PREDICTED: uncharacterized protein LOC8275022 [Ricinus communis][more]
gi|224053539|ref|XP_002297863.1|1.1e-2156.41Humj1 family protein [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g09920.1Cp4.1LG12g09920.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR14791BOMB/KIRA PROTEINScoord: 3..117
score: 6.3
NoneNo IPR availablePANTHERPTHR14791:SF27SUBFAMILY NOT NAMEDcoord: 3..117
score: 6.3