Cp4.1LG12g05660 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g05660
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description60S ribosomal protein L22, putative
LocationCp4.1LG12 : 7980092 .. 7981519 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGTCCTTCGTGCTTTTAAGCTACTCAAAACCCTAAATTGAGCGCCGTTTGTTCTATACATCTTGAGGAAGTTAGGGCGCCAAGCTGCACAGAGCAGAAGCAAAAATGAGCCGTGGAGCAGCCGCATCCGGTGGCCCGAAGGGGAAGAAGAAGGGCGTGACCTTCGTTATCGATTGTGCGAAGCCAGTCGAGGACAAGATTATGGACATCGCTTCCTTGGAGAAGTTTCTTCTCGAGAGGATCAAGGTCGGCGGCAAAGCTGGGGCACTTGGTGACGCTGTCACCGTTACACGTGACAAAAACAAGATCACCGTCAACTCCGATAGCAACTTCTCTAAGAGGTACCAAGTGTTTTGTATTTGTTAATTCTTGTATTATTCTGGATTTGAGACGATGTATATGGTTTTGGATGATTATTGTCCGTGCATTTCTTGAATGTTTGGGAATAAGCGTCGGATTGATGCGTTAGCTGCAGCGGCAGTACTCAGACTACAAACGTTTTGCGGATTGATCGTTGTCTACTGTGATTTTGTTGGAAATTTGTCACATATAGTATTGAATTGTGGAATTGATGAAAATTATTGGGGTTTATTGTACGAATTAATCTTGAGATTTCAGCCATTATCTAGTGTACACGGGAAAGCTACTTCTTTAAGAAGTACTCGTTACCTCATACTAGTTCTTCCAACTCGTCCTGTTGATATTGAAATTGAGATTTCGAGGGATTTCTGGGTCATTTTTAATTTCTCGTCTGTGTAGTCCCTAAATCTATTGTCTTTAGGTATGGTTTCTCTGTGATACGAGGTGGATTACCACTATGTCTTTATTAGTGGAATTTTCTTTGGATACACCTCTGATCTAATTGTATGGGTAATGCGTTTTCTAATTAGTCACCTATTGTAGTTGTAACACTGTACGTATCCATTCTCTTTTTATTAGGATTGATCTTACTATTATATGTACAAGTTTTGAAAGAAGGTGATCGTCACTCTTTAAGTTCATGATTGTTTTGTTTCAAAATAAGCCAGGCCTGTAAACTCCCATCGAACTTCACTGATTGTTCTCTCTTTTGAATCCCAGGTATCTTAAGTACTTGACTAAGAAGTATTTGAAGAAGCACAACGTTAGAGATTGGCTTCGGGTTATTGCTTCGAACAAGGACCGCAACGTCTATGAATTGAGGTACTTCAACATTGCCGAGAACGAGGGCGAGGAAGAAGACTGAGGCTCAAGTCTTACAAATTGGAAGCATTGTTTGCAGTAGGACTAGTTGTTGCGGCCTTTCTCATTTTGAAGGTTGTTGAAATTATATTTCCATACCTCGCCTTGAATTGAGTTATATTATGAGATGATGCAACTCTTGTTTAATTCTGAAGTCTTAATATCTATAAATTTTGATCACGTAGTTCCCTTCTGTCGGTTGGTTTG

mRNA sequence

TAGTCCTTCGTGCTTTTAAGCTACTCAAAACCCTAAATTGAGCGCCGTTTGTTCTATACATCTTGAGGAAGTTAGGGCGCCAAGCTGCACAGAGCAGAAGCAAAAATGAGCCGTGGAGCAGCCGCATCCGGTGGCCCGAAGGGGAAGAAGAAGGGCGTGACCTTCGTTATCGATTGTGCGAAGCCAGTCGAGGACAAGATTATGGACATCGCTTCCTTGGAGAAGTTTCTTCTCGAGAGGATCAAGGTCGGCGGCAAAGCTGGGGCACTTGGTGACGCTGTCACCGTTACACGTGACAAAAACAAGATCACCGTCAACTCCGATAGCAACTTCTCTAAGAGGTATCTTAAGTACTTGACTAAGAAGTATTTGAAGAAGCACAACGTTAGAGATTGGCTTCGGGTTATTGCTTCGAACAAGGACCGCAACGTCTATGAATTGAGGTACTTCAACATTGCCGAGAACGAGGGCGAGGAAGAAGACTGAGGCTCAAGTCTTACAAATTGGAAGCATTGTTTGCAGTAGGACTAGTTGTTGCGGCCTTTCTCATTTTGAAGGTTGTTGAAATTATATTTCCATACCTCGCCTTGAATTGAGTTATATTATGAGATGATGCAACTCTTGTTTAATTCTGAAGTCTTAATATCTATAAATTTTGATCACGTAGTTCCCTTCTGTCGGTTGGTTTG

Coding sequence (CDS)

ATGAGCCGTGGAGCAGCCGCATCCGGTGGCCCGAAGGGGAAGAAGAAGGGCGTGACCTTCGTTATCGATTGTGCGAAGCCAGTCGAGGACAAGATTATGGACATCGCTTCCTTGGAGAAGTTTCTTCTCGAGAGGATCAAGGTCGGCGGCAAAGCTGGGGCACTTGGTGACGCTGTCACCGTTACACGTGACAAAAACAAGATCACCGTCAACTCCGATAGCAACTTCTCTAAGAGGTATCTTAAGTACTTGACTAAGAAGTATTTGAAGAAGCACAACGTTAGAGATTGGCTTCGGGTTATTGCTTCGAACAAGGACCGCAACGTCTATGAATTGAGGTACTTCAACATTGCCGAGAACGAGGGCGAGGAAGAAGACTGA

Protein sequence

MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED
Homology
[Close]
BLAST of Cp4.1LG12g05660 vs. Swiss-Prot
Match: RL222_ARATH (60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.8e-52
Identity = 105/126 (83.33%), Postives = 116/126 (92.06%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60
           MSRG AA    KGKKKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGD+VT
Sbjct: 1   MSRGGAAVA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]
BLAST of Cp4.1LG12g05660 vs. Swiss-Prot
Match: RL223_ARATH (60S ribosomal protein L22-3 OS=Arabidopsis thaliana GN=RPL22C PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.0e-51
Identity = 103/126 (81.75%), Postives = 116/126 (92.06%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60
           MSRG AA+   KGKKKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGD+V+
Sbjct: 1   MSRGNAAAA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           E EEED
Sbjct: 121 EAEEED 124

[Close]
BLAST of Cp4.1LG12g05660 vs. Swiss-Prot
Match: RL221_ARATH (Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana GN=RPL22A PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.4e-41
Identity = 86/126 (68.25%), Postives = 105/126 (83.33%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60
           M+R  A S G   KKKGV+FVIDC+KPV+D I++IA+LEKFL ERIKV GKAGALG++V+
Sbjct: 1   MARVGAKSSGAGAKKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR   KI VN++SNFSKRYLKYLTKKYLKK+N+RDWLRVIASNKD+NVYE+RYF I + 
Sbjct: 61  ITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDE 120

Query: 121 EGEEED 127
               E+
Sbjct: 121 VASYEE 126

[Close]
BLAST of Cp4.1LG12g05660 vs. Swiss-Prot
Match: RL22_RAT (60S ribosomal protein L22 OS=Rattus norvegicus GN=Rpl22 PE=2 SV=2)

HSP 1 Score: 139.0 bits (349), Expect = 3.5e-32
Identity = 77/121 (63.64%), Postives = 93/121 (76.86%), Query Frame = 1 

Query: 7   ASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAV-TVTRDK 66
           A GG K KK+ + F +DC  PVED IMD A+ E+FL ERIKV GKAG LG  V T+ R K
Sbjct: 9   AKGGKK-KKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSK 68

Query: 67  NKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEE 126
           +KITV S+  FSKRYLKYLTKKYLKK+N+RDWLRV+A++K+   YELRYF I ++E EEE
Sbjct: 69  SKITVTSEEPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEE 126

[Close]
BLAST of Cp4.1LG12g05660 vs. Swiss-Prot
Match: RL22_PIG (60S ribosomal protein L22 OS=Sus scrofa GN=RPL22 PE=1 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 5.9e-32
Identity = 77/121 (63.64%), Postives = 93/121 (76.86%), Query Frame = 1 

Query: 7   ASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAV-TVTRDK 66
           A GG K KK+ + F +DC  PVED IMD A+ E+FL ERIKV GKAG LG  V T+ R K
Sbjct: 9   AKGGKK-KKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSK 68

Query: 67  NKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEE 126
           +KITV S+  FSKRYLKYLTKKYLKK+N+RDWLRV+A++K+   YELRYF I ++E EEE
Sbjct: 69  SKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEE 126

[Close]
BLAST of Cp4.1LG12g05660 vs. TrEMBL
Match: A0A0A0K637_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G397560 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 5.0e-62
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60
           MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+VT
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 126

[Close]
BLAST of Cp4.1LG12g05660 vs. TrEMBL
Match: M5XE65_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013414mg PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 5.3e-56
Identity = 117/126 (92.86%), Postives = 120/126 (95.24%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60
           MSRGAAA  GPKGKKKGVTF IDC KPVEDKIMDIASLEKFL ERIKVGGKAGALGDAV+
Sbjct: 1   MSRGAAA--GPKGKKKGVTFTIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDAVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+K+KITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]
BLAST of Cp4.1LG12g05660 vs. TrEMBL
Match: A0A067JW95_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13938 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-55
Identity = 116/126 (92.06%), Postives = 120/126 (95.24%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60
           MSRGAAA  G KGKKKG TFVIDCAKPVEDKIMDIASLEKFL ERIKVGGKAGALGD++T
Sbjct: 1   MSRGAAA--GAKGKKKGATFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSIT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+K+KITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]
BLAST of Cp4.1LG12g05660 vs. TrEMBL
Match: A0A0D2T610_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G145000 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.0e-55
Identity = 116/126 (92.06%), Postives = 119/126 (94.44%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60
           MSRGAAA  GPKGKKKG TF IDCAKPVEDKIMDIASLEKFL ERIKVGGKAGALGD+VT
Sbjct: 1   MSRGAAA--GPKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDK KITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDR+VYELRYFNIAEN
Sbjct: 61  VTRDKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEE+
Sbjct: 121 EGEEEE 124

[Close]
BLAST of Cp4.1LG12g05660 vs. TrEMBL
Match: A9PD55_POPTR (60S ribosomal protein L22-1 OS=Populus trichocarpa GN=POPTR_0013s01680g PE=2 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.5e-55
Identity = 113/121 (93.39%), Postives = 115/121 (95.04%), Query Frame = 1 

Query: 6   AASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVTVTRDK 65
           A + GPKGKKKG TF IDCAKPVEDKIMDIASLEKFL ERIKVGGKAGALGDAVTVTR+K
Sbjct: 4   ATAPGPKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDAVTVTREK 63

Query: 66  NKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEE 125
           NKITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEE
Sbjct: 64  NKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEE 123

Query: 126 D 127
           D
Sbjct: 124 D 124

[Close]
BLAST of Cp4.1LG12g05660 vs. TAIR10
Match: AT3G05560.1 (AT3G05560.1 Ribosomal L22e protein family)

HSP 1 Score: 206.5 bits (524), Expect = 9.9e-54
Identity = 105/126 (83.33%), Postives = 116/126 (92.06%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60
           MSRG AA    KGKKKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGD+VT
Sbjct: 1   MSRGGAAVA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]
BLAST of Cp4.1LG12g05660 vs. TAIR10
Match: AT5G27770.1 (AT5G27770.1 Ribosomal L22e protein family)

HSP 1 Score: 203.0 bits (515), Expect = 1.1e-52
Identity = 103/126 (81.75%), Postives = 116/126 (92.06%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60
           MSRG AA+   KGKKKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGD+V+
Sbjct: 1   MSRGNAAAA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           E EEED
Sbjct: 121 EAEEED 124

[Close]
BLAST of Cp4.1LG12g05660 vs. TAIR10
Match: AT1G02830.1 (AT1G02830.1 Ribosomal L22e protein family)

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-42
Identity = 86/126 (68.25%), Postives = 105/126 (83.33%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60
           M+R  A S G   KKKGV+FVIDC+KPV+D I++IA+LEKFL ERIKV GKAGALG++V+
Sbjct: 1   MARVGAKSSGAGAKKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR   KI VN++SNFSKRYLKYLTKKYLKK+N+RDWLRVIASNKD+NVYE+RYF I + 
Sbjct: 61  ITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDE 120

Query: 121 EGEEED 127
               E+
Sbjct: 121 VASYEE 126

[Close]
BLAST of Cp4.1LG12g05660 vs. NCBI nr
Match: gi|449436493|ref|XP_004136027.1| (PREDICTED: 60S ribosomal protein L22-2 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 7.2e-62
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60
           MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+VT
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 126

[Close]
BLAST of Cp4.1LG12g05660 vs. NCBI nr
Match: gi|596011187|ref|XP_007218604.1| (hypothetical protein PRUPE_ppa013414mg [Prunus persica])

HSP 1 Score: 224.9 bits (572), Expect = 7.7e-56
Identity = 117/126 (92.86%), Postives = 120/126 (95.24%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60
           MSRGAAA  GPKGKKKGVTF IDC KPVEDKIMDIASLEKFL ERIKVGGKAGALGDAV+
Sbjct: 1   MSRGAAA--GPKGKKKGVTFTIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDAVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+K+KITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]
BLAST of Cp4.1LG12g05660 vs. NCBI nr
Match: gi|694420389|ref|XP_009338107.1| (PREDICTED: 60S ribosomal protein L22-3 [Pyrus x bretschneideri])

HSP 1 Score: 224.6 bits (571), Expect = 1.0e-55
Identity = 116/126 (92.06%), Postives = 121/126 (96.03%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60
           MSRG AA+G PKGKKKGVTF IDC KPVEDKIMDIASLEKFL ERIKVGGKAGALGDAV+
Sbjct: 1   MSRGTAAAG-PKGKKKGVTFTIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDAVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+K+KITV+SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTREKSKITVSSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 125

[Close]
BLAST of Cp4.1LG12g05660 vs. NCBI nr
Match: gi|1009148376|ref|XP_015891905.1| (PREDICTED: 60S ribosomal protein L22-2-like [Ziziphus jujuba])

HSP 1 Score: 224.6 bits (571), Expect = 1.0e-55
Identity = 116/126 (92.06%), Postives = 120/126 (95.24%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60
           MSRGAA   GPKGKKKG TFVIDCAKPVEDKIMDIASLEKFL ERIKVGGKAGALG++VT
Sbjct: 1   MSRGAAT--GPKGKKKGATFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGESVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+KNKITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTREKNKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGE+ED
Sbjct: 121 EGEDED 124

[Close]
BLAST of Cp4.1LG12g05660 vs. NCBI nr
Match: gi|449435649|ref|XP_004135607.1| (PREDICTED: 60S ribosomal protein L22-2 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 1.7e-55
Identity = 115/126 (91.27%), Postives = 121/126 (96.03%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60
           MSRG AA  GPKGKKKGVTF IDC+KPVEDKIMDIASLEKFLLERIKVGGKAGALGD+V+
Sbjct: 1   MSRGGAA--GPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+K+KITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRNVYELRYFNIAEN
Sbjct: 61  VTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g05660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL222_ARATH1.8e-5283.3360S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1[more]
RL223_ARATH2.0e-5181.7560S ribosomal protein L22-3 OS=Arabidopsis thaliana GN=RPL22C PE=2 SV=1[more]
RL221_ARATH2.4e-4168.25Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana GN=RPL22A PE=3 SV=1[more]
RL22_RAT3.5e-3263.6460S ribosomal protein L22 OS=Rattus norvegicus GN=Rpl22 PE=2 SV=2[more]
RL22_PIG5.9e-3263.6460S ribosomal protein L22 OS=Sus scrofa GN=RPL22 PE=1 SV=2[more]
BLAST of Cp4.1LG12g05660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K637_CUCSA5.0e-6299.21Uncharacterized protein OS=Cucumis sativus GN=Csa_7G397560 PE=4 SV=1[more]
M5XE65_PRUPE5.3e-5692.86Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013414mg PE=4 SV=1[more]
A0A067JW95_JATCU1.6e-5592.06Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13938 PE=4 SV=1[more]
A0A0D2T610_GOSRA2.0e-5592.06Uncharacterized protein OS=Gossypium raimondii GN=B456_008G145000 PE=4 SV=1[more]
A9PD55_POPTR3.5e-5593.3960S ribosomal protein L22-1 OS=Populus trichocarpa GN=POPTR_0013s01680g PE=2 SV=... [more]
BLAST of Cp4.1LG12g05660 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G05560.19.9e-5483.33 Ribosomal L22e protein family[more]
AT5G27770.11.1e-5281.75 Ribosomal L22e protein family[more]
AT1G02830.11.3e-4268.25 Ribosomal L22e protein family[more]
BLAST of Cp4.1LG12g05660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449436493|ref|XP_004136027.1|7.2e-6299.21PREDICTED: 60S ribosomal protein L22-2 [Cucumis sativus][more]
gi|596011187|ref|XP_007218604.1|7.7e-5692.86hypothetical protein PRUPE_ppa013414mg [Prunus persica][more]
gi|694420389|ref|XP_009338107.1|1.0e-5592.06PREDICTED: 60S ribosomal protein L22-3 [Pyrus x bretschneideri][more]
gi|1009148376|ref|XP_015891905.1|1.0e-5592.06PREDICTED: 60S ribosomal protein L22-2-like [Ziziphus jujuba][more]
gi|449435649|ref|XP_004135607.1|1.7e-5591.27PREDICTED: 60S ribosomal protein L22-2 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR002671Ribosomal_L22e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g05660.1Cp4.1LG12g05660.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002671Ribosomal protein L22ePANTHERPTHR1006460S RIBOSOMAL PROTEIN L22coord: 1..126
score: 3.0
IPR002671Ribosomal protein L22ePFAMPF01776Ribosomal_L22ecoord: 16..124
score: 3.6
NoneNo IPR availablePANTHERPTHR10064:SF3SUBFAMILY NOT NAMEDcoord: 1..126
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g05660Cucsa.205550Cucumber (Gy14) v1cgycpeB0579
Cp4.1LG12g05660CmaCh17G010850Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g05660CmaCh08G004250Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g05660CmoCh17G010600Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g05660CmoCh08G004190Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g05660Cla015071Watermelon (97103) v1cpewmB131
Cp4.1LG12g05660Csa7G397560Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g05660MELO3C015999Melon (DHL92) v3.5.1cpemeB118
Cp4.1LG12g05660ClCG09G005850Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g05660CSPI07G17500Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g05660Lsi02G024070Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g05660MELO3C015999.2Melon (DHL92) v3.6.1cpemedB145
Cp4.1LG12g05660CsaV3_7G029290Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g05660Bhi09G000719Wax gourdcpewgoB0210
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g05660Cp4.1LG17g06990Cucurbita pepo (Zucchini)cpecpeB157
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g05660Cucurbita pepo (Zucchini)cpecpeB193
Cp4.1LG12g05660Cucumber (Gy14) v1cgycpeB0185
Cp4.1LG12g05660Cucumber (Gy14) v1cgycpeB0669
Cp4.1LG12g05660Cucurbita maxima (Rimu)cmacpeB260
Cp4.1LG12g05660Cucurbita moschata (Rifu)cmocpeB224
Cp4.1LG12g05660Wild cucumber (PI 183967)cpecpiB140
Cp4.1LG12g05660Wild cucumber (PI 183967)cpecpiB141
Cp4.1LG12g05660Cucumber (Chinese Long) v2cpecuB139
Cp4.1LG12g05660Bottle gourd (USVL1VR-Ls)cpelsiB116
Cp4.1LG12g05660Watermelon (Charleston Gray)cpewcgB134
Cp4.1LG12g05660Watermelon (97103) v1cpewmB141
Cp4.1LG12g05660Watermelon (97103) v1cpewmB153
Cp4.1LG12g05660Melon (DHL92) v3.5.1cpemeB144
Cp4.1LG12g05660Melon (DHL92) v3.5.1cpemeB146
Cp4.1LG12g05660Cucumber (Gy14) v2cgybcpeB309
Cp4.1LG12g05660Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g05660Melon (DHL92) v3.6.1cpemedB172
Cp4.1LG12g05660Silver-seed gourdcarcpeB0158
Cp4.1LG12g05660Silver-seed gourdcarcpeB0801
Cp4.1LG12g05660Silver-seed gourdcarcpeB1143
Cp4.1LG12g05660Cucumber (Chinese Long) v3cpecucB0162
Cp4.1LG12g05660Wax gourdcpewgoB0171
Cp4.1LG12g05660Wax gourdcpewgoB0193