CmoCh08G004190 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh08G004190
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description60S ribosomal protein L22-1
LocationCmo_Chr08 : 2570564 .. 2571924 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGCCTTAAAACCGCAACTCAAAACCCTAAAATCAGCGCCGATTGTTGTGTAACATTTCTACAGGAAATTTGGGCAGCGAGTTGCAGAGAAGGAGCAAAAATGAGCCGTGGAGCAGCAGCATCCGGTGGCCCCAAGGGCAAGAAGAAGGGCTCGACCTTTGTCATCGATTGTGCGAAGCCAGTTGAGGACAAGATCATGGACATCGCCTCCTTGGAGAAGTTTCTTCTCGAGAGGATCAAGGTTGGCGGCAAAGCTGGGGCACTTGGTGACTCGGTTACCGTCACTCGGGACAAGAACAAGATCACCGTTAACTCCGATAGCAACTTCTCCAAGAGGTATTCACTGATTTGTAGTTATTTGTCATAGTTCGTTCTGGATTTGGTTTTGGATTTGTGATAATGAACACGGTTTTGGAGGAGTCATGTTCATGTATTTGTCCGTTTGTTCGGGAGTAAGCGTTGTAGTTATCTGCTAGTTGCCGCGTTATTACCGAGAATGGATGCGACGTGCGGGTTGTTCTTTGTTTTCTGTGATTTTGTGTTCTTGTTGCCTATTTTATTGGATTGTGGAGTTGATGAGCAATAGTGGAATTCATTGCTCGAACAGATCTCGAGATTTCAGCCACGATTAAGTGTAAACAGGAAAGTTCTTCAAAAAGTATTCATTATCTCATAATAGTTTTTCCTCTTCGTGCCATTGATTCTGAATTTTTGTTTCGAGTGCATTTTGATTTCTAGGTCAGTTCTTAAATCTACAAGCTTTAGGTGTAGTTCTTCCGAGTTGTTGGGTGGATTAACACTAGGTCTTTTCTTTGGAATACATCTCTAAATCTCTGATCTAGTTCCAGAAAGGGAATCATTAAAGAGATGCTACTTCAAATATCCATTCTCCTTTTTATGGATAACTTAGAATGTAATCCATTAGTTGCAATATGATTGTTTTTGTTGGAAACTACGAATTAGACCTTTAAACTCCCAATAAACTTTGCTAAAATTGTTCTCTCTTTTGAATCACAGGTATCTTAAATACTTGACTAAGAAGTATTTGAAGAAACACAATGTTAGAGATTGGCTTCGGGTAATCGCTTCGAACAAGGACCGCAACGTCTATGAATTAAGATACTTCAACATTGCTGAGAATGAGGGCGAGGAAGAGGATTGAGGTTCAAGGCCTATATTTTGGAAGCATCGTTTGTAGTAGGAATTAAGCTTGTTGAAATTATATTTCCATACCTTGTCTTGAAGCTTTCCATATAGATCAGCAAGGATTCTTTTGAGTTATGAGATTATGCAACTCTTGTTTACTACTGCTGAAGTTTTATCTATAAATTTTGTTCACGAAGCTCACCCCACTTCTTTTG

mRNA sequence

GAGCCTTAAAACCGCAACTCAAAACCCTAAAATCAGCGCCGATTGTTGTGTAACATTTCTACAGGAAATTTGGGCAGCGAGTTGCAGAGAAGGAGCAAAAATGAGCCGTGGAGCAGCAGCATCCGGTGGCCCCAAGGGCAAGAAGAAGGGCTCGACCTTTGTCATCGATTGTGCGAAGCCAGTTGAGGACAAGATCATGGACATCGCCTCCTTGGAGAAGTTTCTTCTCGAGAGGATCAAGGTTGGCGGCAAAGCTGGGGCACTTGGTGACTCGGTTACCGTCACTCGGGACAAGAACAAGATCACCGTTAACTCCGATAGCAACTTCTCCAAGAGGTATCTTAAATACTTGACTAAGAAGTATTTGAAGAAACACAATGTTAGAGATTGGCTTCGGGTAATCGCTTCGAACAAGGACCGCAACGTCTATGAATTAAGATACTTCAACATTGCTGAGAATGAGGGCGAGGAAGAGGATTGAGGTTCAAGGCCTATATTTTGGAAGCATCGTTTGTAGTAGGAATTAAGCTTGTTGAAATTATATTTCCATACCTTGTCTTGAAGCTTTCCATATAGATCAGCAAGGATTCTTTTGAGTTATGAGATTATGCAACTCTTGTTTACTACTGCTGAAGTTTTATCTATAAATTTTGTTCACGAAGCTCACCCCACTTCTTTTG

Coding sequence (CDS)

ATGAGCCGTGGAGCAGCAGCATCCGGTGGCCCCAAGGGCAAGAAGAAGGGCTCGACCTTTGTCATCGATTGTGCGAAGCCAGTTGAGGACAAGATCATGGACATCGCCTCCTTGGAGAAGTTTCTTCTCGAGAGGATCAAGGTTGGCGGCAAAGCTGGGGCACTTGGTGACTCGGTTACCGTCACTCGGGACAAGAACAAGATCACCGTTAACTCCGATAGCAACTTCTCCAAGAGGTATCTTAAATACTTGACTAAGAAGTATTTGAAGAAACACAATGTTAGAGATTGGCTTCGGGTAATCGCTTCGAACAAGGACCGCAACGTCTATGAATTAAGATACTTCAACATTGCTGAGAATGAGGGCGAGGAAGAGGATTGA
Homology
[Close]
BLAST of CmoCh08G004190 vs. Swiss-Prot
Match: RL222_ARATH (60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 6.7e-52
Identity = 105/126 (83.33%), Postives = 115/126 (91.27%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRG AA    KGKKKG +F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSVT
Sbjct: 1   MSRGGAAVA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]
BLAST of CmoCh08G004190 vs. Swiss-Prot
Match: RL223_ARATH (60S ribosomal protein L22-3 OS=Arabidopsis thaliana GN=RPL22C PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 7.4e-51
Identity = 103/126 (81.75%), Postives = 115/126 (91.27%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRG AA+   KGKKKG +F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSV+
Sbjct: 1   MSRGNAAAA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           E EEED
Sbjct: 121 EAEEED 124

[Close]
BLAST of CmoCh08G004190 vs. Swiss-Prot
Match: RL221_ARATH (Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana GN=RPL22A PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 9.1e-41
Identity = 86/126 (68.25%), Postives = 104/126 (82.54%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           M+R  A S G   KKKG +FVIDC+KPV+D I++IA+LEKFL ERIKV GKAGALG+SV+
Sbjct: 1   MARVGAKSSGAGAKKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR   KI VN++SNFSKRYLKYLTKKYLKK+N+RDWLRVIASNKD+NVYE+RYF I + 
Sbjct: 61  ITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDE 120

Query: 121 EGEEED 127
               E+
Sbjct: 121 VASYEE 126

[Close]
BLAST of CmoCh08G004190 vs. Swiss-Prot
Match: RL22_RAT (60S ribosomal protein L22 OS=Rattus norvegicus GN=Rpl22 PE=2 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-31
Identity = 77/121 (63.64%), Postives = 92/121 (76.03%), Query Frame = 1 

Query: 7   ASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSV-TVTRDK 66
           A GG K KK+   F +DC  PVED IMD A+ E+FL ERIKV GKAG LG  V T+ R K
Sbjct: 9   AKGGKK-KKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSK 68

Query: 67  NKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEE 126
           +KITV S+  FSKRYLKYLTKKYLKK+N+RDWLRV+A++K+   YELRYF I ++E EEE
Sbjct: 69  SKITVTSEEPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEE 126

[Close]
BLAST of CmoCh08G004190 vs. Swiss-Prot
Match: RL22_CHICK (60S ribosomal protein L22 OS=Gallus gallus GN=RPL22 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-31
Identity = 77/122 (63.11%), Postives = 93/122 (76.23%), Query Frame = 1 

Query: 6   AASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSV-TVTRD 65
           AA GG K KK+   F +DC  PVED IMD A+ E+FL ERIKV GKAG LG  V T+ R 
Sbjct: 8   AAKGGKK-KKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERS 67

Query: 66  KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEE 125
           K+KITV S+  FSKRYLKYLTKKYLKK+N+RDWLRV+A++K+   YELRYF I ++E EE
Sbjct: 68  KSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEE 126

Query: 126 ED 127
           E+
Sbjct: 128 EE 126

[Close]
BLAST of CmoCh08G004190 vs. TrEMBL
Match: A0A0A0K637_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G397560 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 1.9e-61
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRGAAASGGPKGKKKG TFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 126

[Close]
BLAST of CmoCh08G004190 vs. TrEMBL
Match: A0A067JW95_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13938 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 9.1e-56
Identity = 117/126 (92.86%), Postives = 121/126 (96.03%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRGAAA  G KGKKKG+TFVIDCAKPVEDKIMDIASLEKFL ERIKVGGKAGALGDS+T
Sbjct: 1   MSRGAAA--GAKGKKKGATFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSIT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+K+KITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]
BLAST of CmoCh08G004190 vs. TrEMBL
Match: A0A0D2T610_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G145000 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-55
Identity = 117/126 (92.86%), Postives = 120/126 (95.24%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRGAAA  GPKGKKKG+TF IDCAKPVEDKIMDIASLEKFL ERIKVGGKAGALGDSVT
Sbjct: 1   MSRGAAA--GPKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDK KITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDR+VYELRYFNIAEN
Sbjct: 61  VTRDKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEE+
Sbjct: 121 EGEEEE 124

[Close]
BLAST of CmoCh08G004190 vs. TrEMBL
Match: A0A0K9RHM6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_065570 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.0e-55
Identity = 116/126 (92.06%), Postives = 121/126 (96.03%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRGA A+GG KGKKKG++F IDCAKPVEDKIMDIASLEKFL ERIKVGGKAGALGDSVT
Sbjct: 1   MSRGA-AAGGAKGKKKGASFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNK+RNVYELRYFNIAEN
Sbjct: 61  VTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKERNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           E EEED
Sbjct: 121 EAEEED 125

[Close]
BLAST of CmoCh08G004190 vs. TrEMBL
Match: D7SYD9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g02290 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.0e-55
Identity = 115/126 (91.27%), Postives = 122/126 (96.83%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRG+ A+GGPKGKKKG+TF IDCAKPVEDKIMDIASLEKFL ERIKVGGKAGALGDSVT
Sbjct: 1   MSRGS-ATGGPKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDK+KITV S+S+FSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKSKITVTSESSFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGE+ED
Sbjct: 121 EGEDED 125

[Close]
BLAST of CmoCh08G004190 vs. TAIR10
Match: AT3G05560.1 (AT3G05560.1 Ribosomal L22e protein family)

HSP 1 Score: 204.5 bits (519), Expect = 3.8e-53
Identity = 105/126 (83.33%), Postives = 115/126 (91.27%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRG AA    KGKKKG +F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSVT
Sbjct: 1   MSRGGAAVA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]
BLAST of CmoCh08G004190 vs. TAIR10
Match: AT5G27770.1 (AT5G27770.1 Ribosomal L22e protein family)

HSP 1 Score: 201.1 bits (510), Expect = 4.2e-52
Identity = 103/126 (81.75%), Postives = 115/126 (91.27%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRG AA+   KGKKKG +F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSV+
Sbjct: 1   MSRGNAAAA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           E EEED
Sbjct: 121 EAEEED 124

[Close]
BLAST of CmoCh08G004190 vs. TAIR10
Match: AT1G02830.1 (AT1G02830.1 Ribosomal L22e protein family)

HSP 1 Score: 167.5 bits (423), Expect = 5.1e-42
Identity = 86/126 (68.25%), Postives = 104/126 (82.54%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           M+R  A S G   KKKG +FVIDC+KPV+D I++IA+LEKFL ERIKV GKAGALG+SV+
Sbjct: 1   MARVGAKSSGAGAKKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR   KI VN++SNFSKRYLKYLTKKYLKK+N+RDWLRVIASNKD+NVYE+RYF I + 
Sbjct: 61  ITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDE 120

Query: 121 EGEEED 127
               E+
Sbjct: 121 VASYEE 126

[Close]
BLAST of CmoCh08G004190 vs. NCBI nr
Match: gi|449436493|ref|XP_004136027.1| (PREDICTED: 60S ribosomal protein L22-2 [Cucumis sativus])

HSP 1 Score: 243.0 bits (619), Expect = 2.7e-61
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRGAAASGGPKGKKKG TFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 126

[Close]
BLAST of CmoCh08G004190 vs. NCBI nr
Match: gi|1009148376|ref|XP_015891905.1| (PREDICTED: 60S ribosomal protein L22-2-like [Ziziphus jujuba])

HSP 1 Score: 225.3 bits (573), Expect = 5.9e-56
Identity = 117/126 (92.86%), Postives = 121/126 (96.03%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRGAA   GPKGKKKG+TFVIDCAKPVEDKIMDIASLEKFL ERIKVGGKAGALG+SVT
Sbjct: 1   MSRGAAT--GPKGKKKGATFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGESVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+KNKITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTREKNKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGE+ED
Sbjct: 121 EGEDED 124

[Close]
BLAST of CmoCh08G004190 vs. NCBI nr
Match: gi|802688857|ref|XP_012082776.1| (PREDICTED: 60S ribosomal protein L22-2 [Jatropha curcas])

HSP 1 Score: 224.2 bits (570), Expect = 1.3e-55
Identity = 117/126 (92.86%), Postives = 121/126 (96.03%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRGAAA  G KGKKKG+TFVIDCAKPVEDKIMDIASLEKFL ERIKVGGKAGALGDS+T
Sbjct: 1   MSRGAAA--GAKGKKKGATFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSIT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+K+KITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]
BLAST of CmoCh08G004190 vs. NCBI nr
Match: gi|823209724|ref|XP_012438035.1| (PREDICTED: 60S ribosomal protein L22-2-like [Gossypium raimondii])

HSP 1 Score: 223.8 bits (569), Expect = 1.7e-55
Identity = 117/126 (92.86%), Postives = 120/126 (95.24%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRGAAA  GPKGKKKG+TF IDCAKPVEDKIMDIASLEKFL ERIKVGGKAGALGDSVT
Sbjct: 1   MSRGAAA--GPKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDK KITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDR+VYELRYFNIAEN
Sbjct: 61  VTRDKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEE+
Sbjct: 121 EGEEEE 124

[Close]
BLAST of CmoCh08G004190 vs. NCBI nr
Match: gi|951020457|ref|XP_014512395.1| (PREDICTED: 60S ribosomal protein L22-2 [Vigna radiata var. radiata])

HSP 1 Score: 223.4 bits (568), Expect = 2.2e-55
Identity = 117/126 (92.86%), Postives = 120/126 (95.24%), Query Frame = 1 

Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRG+AA  G KGKKKG+TF IDCAKPVEDKIMDIASLEKFL ERIKVGGKAGALGDSVT
Sbjct: 1   MSRGSAA--GAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDK+KITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

The following BLAST results are available for this feature:
BLAST of CmoCh08G004190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL222_ARATH6.7e-5283.3360S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1[more]
RL223_ARATH7.4e-5181.7560S ribosomal protein L22-3 OS=Arabidopsis thaliana GN=RPL22C PE=2 SV=1[more]
RL221_ARATH9.1e-4168.25Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana GN=RPL22A PE=3 SV=1[more]
RL22_RAT1.3e-3163.6460S ribosomal protein L22 OS=Rattus norvegicus GN=Rpl22 PE=2 SV=2[more]
RL22_CHICK2.2e-3163.1160S ribosomal protein L22 OS=Gallus gallus GN=RPL22 PE=2 SV=1[more]
BLAST of CmoCh08G004190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K637_CUCSA1.9e-6199.21Uncharacterized protein OS=Cucumis sativus GN=Csa_7G397560 PE=4 SV=1[more]
A0A067JW95_JATCU9.1e-5692.86Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13938 PE=4 SV=1[more]
A0A0D2T610_GOSRA1.2e-5592.86Uncharacterized protein OS=Gossypium raimondii GN=B456_008G145000 PE=4 SV=1[more]
A0A0K9RHM6_SPIOL2.0e-5592.06Uncharacterized protein OS=Spinacia oleracea GN=SOVF_065570 PE=4 SV=1[more]
D7SYD9_VITVI2.0e-5591.27Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g02290 PE=4 SV=... [more]
BLAST of CmoCh08G004190 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G05560.13.8e-5383.33 Ribosomal L22e protein family[more]
AT5G27770.14.2e-5281.75 Ribosomal L22e protein family[more]
AT1G02830.15.1e-4268.25 Ribosomal L22e protein family[more]
BLAST of CmoCh08G004190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449436493|ref|XP_004136027.1|2.7e-6199.21PREDICTED: 60S ribosomal protein L22-2 [Cucumis sativus][more]
gi|1009148376|ref|XP_015891905.1|5.9e-5692.86PREDICTED: 60S ribosomal protein L22-2-like [Ziziphus jujuba][more]
gi|802688857|ref|XP_012082776.1|1.3e-5592.86PREDICTED: 60S ribosomal protein L22-2 [Jatropha curcas][more]
gi|823209724|ref|XP_012438035.1|1.7e-5592.86PREDICTED: 60S ribosomal protein L22-2-like [Gossypium raimondii][more]
gi|951020457|ref|XP_014512395.1|2.2e-5592.86PREDICTED: 60S ribosomal protein L22-2 [Vigna radiata var. radiata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002671Ribosomal_L22e
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G004190.1CmoCh08G004190.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002671Ribosomal protein L22ePANTHERPTHR1006460S RIBOSOMAL PROTEIN L22coord: 1..126
score: 2.7
IPR002671Ribosomal protein L22ePFAMPF01776Ribosomal_L22ecoord: 16..124
score: 2.7
NoneNo IPR availablePANTHERPTHR10064:SF3SUBFAMILY NOT NAMEDcoord: 1..126
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh08G004190Cucsa.205550Cucumber (Gy14) v1cgycmoB0610
CmoCh08G004190CmaCh17G010850Cucurbita maxima (Rimu)cmacmoB374
CmoCh08G004190CmaCh08G004250Cucurbita maxima (Rimu)cmacmoB913
CmoCh08G004190Cla015071Watermelon (97103) v1cmowmB843
CmoCh08G004190Csa7G397560Cucumber (Chinese Long) v2cmocuB900
CmoCh08G004190MELO3C015999Melon (DHL92) v3.5.1cmomeB815
CmoCh08G004190ClCG09G005850Watermelon (Charleston Gray)cmowcgB785
CmoCh08G004190CSPI07G17500Wild cucumber (PI 183967)cmocpiB913
CmoCh08G004190Lsi02G024070Bottle gourd (USVL1VR-Ls)cmolsiB809
CmoCh08G004190Cp4.1LG17g06990Cucurbita pepo (Zucchini)cmocpeB853
CmoCh08G004190Cp4.1LG12g05660Cucurbita pepo (Zucchini)cmocpeB839
CmoCh08G004190MELO3C015999.2Melon (DHL92) v3.6.1cmomedB920
CmoCh08G004190CsaV3_7G029290Cucumber (Chinese Long) v3cmocucB1066
CmoCh08G004190Cla97C09G168350Watermelon (97103) v2cmowmbB916
CmoCh08G004190Bhi09G000719Wax gourdcmowgoB1118
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh08G004190CmoCh17G010600Cucurbita moschata (Rifu)cmocmoB319
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G004190Melon (DHL92) v3.5.1cmomeB836
CmoCh08G004190Cucumber (Gy14) v2cgybcmoB955
CmoCh08G004190Silver-seed gourdcarcmoB0157
CmoCh08G004190Silver-seed gourdcarcmoB0771
CmoCh08G004190Cucumber (Chinese Long) v3cmocucB1044
CmoCh08G004190Wax gourdcmowgoB1081
CmoCh08G004190Cucumber (Gy14) v1cgycmoB0200
CmoCh08G004190Cucurbita maxima (Rimu)cmacmoB276
CmoCh08G004190Wild cucumber (PI 183967)cmocpiB892
CmoCh08G004190Cucumber (Chinese Long) v2cmocuB879