CSPI07G17500 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G17500
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	60S ribosomal protein L22, putative
Location	Chr7 : 15848350 .. 15849916 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACAAATCTCCTTCGTGCTTTAAAACACAAACTCAAAACCCTAAATTCAGCGCCGATTGTTCAATACATCTTTGCAGGAAGTTAGAGCAAAGCAGAAGCAAAAAATGAGCCGTGGAGCAGCCGCATCCGGTGGCCCTAAGGGGAAGAAGAAGGGTGTGACCTTCGTTATCGATTGTGCGAAGCCAGTTGAGGACAAGATCATGGACATCGCCTCATTGGAGAAGTTTCTTCTCGAGAGGATCAAGGTCGGCGGTAAAGCTGGAGCACTTGGTGACTCTGTTACTGTCACTAGGGACAAGAACAAGATTACTGTCAACTCAGACAGCAATTTCTCCAAGAGGTACCCTTTGTTTTGTATTTGGTAATTCTTATATATTTTGGATGTGTTTTGTTGGTGCGCTTGTTTATTGGGCTGGAAATACGCGTTGGAATAATCTGGTAGCTGCAGCAATAGTACTGAGAATACAAGCTTTGTGCGGATTGATCTTTGTTTACTGTGATTTTGTTGGAAATTTGTTGCATATTGTATTGGATTGTGGAATTGATGAGCATTACAGGGATGTACTCGAATAATTGATCCGAGATTTTGGCCATGATTTAGTGTAAACGTGAAAGTTACTTCTTCAAGAAGTGTTTGTTGATTTCGAGTGCATTCCGATTCCTGGGTCATTTTTGTTTTTGTGAATTGTGAAGTTCTTGAATCTATAAGCTTTGGGTACATTATGTTGTCAGGTGGATTAACATCATGTCTTTATTTGTGGAATTCTCATATGATCCATTGTAAAACATGGACTCGTTAAGGATGTTGCTTGTCTAGACGCTCATGGATTTCTCGATTAGCTAGCTTTTGTAGTTGTAACGCTATGTATCCATTTTCTTTTTGTTCCCCTTTCGTTTAATAGATGAACTTAGTATTGTACGTGTGAGTTTTGAACAATAGGAGGTGATCTTGCTCTTTAAGTTATGATTGTTTTGTTGGAAAAATTGCCTGTGAACTCCTAATTAACTTTGTTGATGTTTCTCTCTTTTGAATTCCAGGTATCTCAAATATTTGACCAAGAAGTATTTGAAGAAACACAACGTTAGAGATTGGCTTCGGGTTATTGCTTCGAACAAGGACCGCAATGTCTATGAATTGAGATACTTCAACATTGCCGAGAATGAGGGTGAGGAAGAAGACTGAAGTTGAAGTCCTTATATTTTGGAAGCATTGTTTGCAGTAGGATTAGCTATATTTCCATACCTTGTCTCGAAGCGTTTTCCATATAGAACATAGCAAGGGGATTGCCTGAGTTATGAGATGATGCAACTCTTGTTTATTTCTGAAGTTTTAATATCTATAAATTTTGCTCATGTAGCTCTCTTCTTTTGATTGATTTGAAGATACTTTTCTTACTACGAGAGTATTAGCAAAAGTGATAATCTGTACTTGGTTTGAGAAATTGGAATTGGCACAGTTCTGAGGAAGTTCAAACTGTTTGGTACTGTTTGCGGAAGAGTTTGCAACCCTAATGGTTTACTTCAATGGAGGACATCAAATAAACTTAAATTCTTGAGAAAGCTCT

mRNA sequence

ATGAGCCGTGGAGCAGCCGCATCCGGTGGCCCTAAGGGGAAGAAGAAGGGTGTGACCTTCGTTATCGATTGTGCGAAGCCAGTTGAGGACAAGATCATGGACATCGCCTCATTGGAGAAGTTTCTTCTCGAGAGGATCAAGGTCGGCGGTAAAGCTGGAGCACTTGGTGACTCTGTTACTGTCACTAGGGACAAGAACAAGATTACTGTCAACTCAGACAGCAATTTCTCCAAGAGGTATCTCAAATATTTGACCAAGAAGTATTTGAAGAAACACAACGTTAGAGATTGGCTTCGGGTTATTGCTTCGAACAAGGACCGCAATGTCTATGAATTGAGATACTTCAACATTGCCGAGAATGAGGGTGAGGAAGAAGACTGA

Coding sequence (CDS)

ATGAGCCGTGGAGCAGCCGCATCCGGTGGCCCTAAGGGGAAGAAGAAGGGTGTGACCTTCGTTATCGATTGTGCGAAGCCAGTTGAGGACAAGATCATGGACATCGCCTCATTGGAGAAGTTTCTTCTCGAGAGGATCAAGGTCGGCGGTAAAGCTGGAGCACTTGGTGACTCTGTTACTGTCACTAGGGACAAGAACAAGATTACTGTCAACTCAGACAGCAATTTCTCCAAGAGGTATCTCAAATATTTGACCAAGAAGTATTTGAAGAAACACAACGTTAGAGATTGGCTTCGGGTTATTGCTTCGAACAAGGACCGCAATGTCTATGAATTGAGATACTTCAACATTGCCGAGAATGAGGGTGAGGAAGAAGACTGA

Homology

[Close]

BLAST of CSPI07G17500 vs. Swiss-Prot
Match: RL222_ARATH (60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 4.7e-53
Identity = 106/126 (84.13%), Postives = 116/126 (92.06%), Query Frame = 1


Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRG AA    KGKKKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSVT
Sbjct: 1   MSRGGAAVA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]

BLAST of CSPI07G17500 vs. Swiss-Prot
Match: RL223_ARATH (60S ribosomal protein L22-3 OS=Arabidopsis thaliana GN=RPL22C PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.2e-52
Identity = 104/126 (82.54%), Postives = 116/126 (92.06%), Query Frame = 1


Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRG AA+   KGKKKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSV+
Sbjct: 1   MSRGNAAAA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           E EEED
Sbjct: 121 EAEEED 124

[Close]

BLAST of CSPI07G17500 vs. Swiss-Prot
Match: RL221_ARATH (Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana GN=RPL22A PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.3e-42
Identity = 87/126 (69.05%), Postives = 105/126 (83.33%), Query Frame = 1


Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           M+R  A S G   KKKGV+FVIDC+KPV+D I++IA+LEKFL ERIKV GKAGALG+SV+
Sbjct: 1   MARVGAKSSGAGAKKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR   KI VN++SNFSKRYLKYLTKKYLKK+N+RDWLRVIASNKD+NVYE+RYF I + 
Sbjct: 61  ITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDE 120

Query: 121 EGEEED 127
               E+
Sbjct: 121 VASYEE 126

[Close]

BLAST of CSPI07G17500 vs. Swiss-Prot
Match: RL22_RAT (60S ribosomal protein L22 OS=Rattus norvegicus GN=Rpl22 PE=2 SV=2)

HSP 1 Score: 139.4 bits (350), Expect = 2.7e-32
Identity = 77/121 (63.64%), Postives = 93/121 (76.86%), Query Frame = 1


Query: 7   ASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSV-TVTRDK 66
           A GG K KK+ + F +DC  PVED IMD A+ E+FL ERIKV GKAG LG  V T+ R K
Sbjct: 9   AKGGKK-KKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSK 68

Query: 67  NKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEE 126
           +KITV S+  FSKRYLKYLTKKYLKK+N+RDWLRV+A++K+   YELRYF I ++E EEE
Sbjct: 69  SKITVTSEEPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEE 126

[Close]

BLAST of CSPI07G17500 vs. Swiss-Prot
Match: RL22_CHICK (60S ribosomal protein L22 OS=Gallus gallus GN=RPL22 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.6e-32
Identity = 77/122 (63.11%), Postives = 94/122 (77.05%), Query Frame = 1


Query: 6   AASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSV-TVTRD 65
           AA GG K KK+ + F +DC  PVED IMD A+ E+FL ERIKV GKAG LG  V T+ R 
Sbjct: 8   AAKGGKK-KKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERS 67

Query: 66  KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEE 125
           K+KITV S+  FSKRYLKYLTKKYLKK+N+RDWLRV+A++K+   YELRYF I ++E EE
Sbjct: 68  KSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEE 126

Query: 126 ED 127
           E+
Sbjct: 128 EE 126

[Close]

BLAST of CSPI07G17500 vs. TrEMBL
Match: A0A0A0K637_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G397560 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.3e-62
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1


Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 126

[Close]

BLAST of CSPI07G17500 vs. TrEMBL
Match: A0A067JW95_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13938 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 5.4e-56
Identity = 117/126 (92.86%), Postives = 120/126 (95.24%), Query Frame = 1


Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRGAAA  G KGKKKG TFVIDCAKPVEDKIMDIASLEKFL ERIKVGGKAGALGDS+T
Sbjct: 1   MSRGAAA--GAKGKKKGATFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSIT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+K+KITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]

BLAST of CSPI07G17500 vs. TrEMBL
Match: A0A0D2T610_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G145000 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 7.0e-56
Identity = 117/126 (92.86%), Postives = 119/126 (94.44%), Query Frame = 1


Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRGAAA  GPKGKKKG TF IDCAKPVEDKIMDIASLEKFL ERIKVGGKAGALGDSVT
Sbjct: 1   MSRGAAA--GPKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDK KITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDR+VYELRYFNIAEN
Sbjct: 61  VTRDKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEE+
Sbjct: 121 EGEEEE 124

[Close]

BLAST of CSPI07G17500 vs. TrEMBL
Match: M5XE65_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013414mg PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 9.2e-56
Identity = 116/126 (92.06%), Postives = 120/126 (95.24%), Query Frame = 1


Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRGAAA  GPKGKKKGVTF IDC KPVEDKIMDIASLEKFL ERIKVGGKAGALGD+V+
Sbjct: 1   MSRGAAA--GPKGKKKGVTFTIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDAVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+K+KITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]

BLAST of CSPI07G17500 vs. TrEMBL
Match: A0A0J8BC91_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g067250 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 9.2e-56
Identity = 116/126 (92.06%), Postives = 119/126 (94.44%), Query Frame = 1


Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRG+A  GG KGKKKG +F IDCAKPVEDKIMDIASLEKFL ERIKVGGKAGALGDSVT
Sbjct: 1   MSRGSAV-GGAKGKKKGASFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTREKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           E EEED
Sbjct: 121 EAEEED 125

[Close]

BLAST of CSPI07G17500 vs. TAIR10
Match: AT3G05560.1 (AT3G05560.1 Ribosomal L22e protein family)

HSP 1 Score: 208.4 bits (529), Expect = 2.6e-54
Identity = 106/126 (84.13%), Postives = 116/126 (92.06%), Query Frame = 1


Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRG AA    KGKKKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSVT
Sbjct: 1   MSRGGAAVA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]

BLAST of CSPI07G17500 vs. TAIR10
Match: AT5G27770.1 (AT5G27770.1 Ribosomal L22e protein family)

HSP 1 Score: 204.9 bits (520), Expect = 2.9e-53
Identity = 104/126 (82.54%), Postives = 116/126 (92.06%), Query Frame = 1


Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRG AA+   KGKKKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSV+
Sbjct: 1   MSRGNAAAA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           E EEED
Sbjct: 121 EAEEED 124

[Close]

BLAST of CSPI07G17500 vs. TAIR10
Match: AT1G02830.1 (AT1G02830.1 Ribosomal L22e protein family)

HSP 1 Score: 171.4 bits (433), Expect = 3.6e-43
Identity = 87/126 (69.05%), Postives = 105/126 (83.33%), Query Frame = 1


Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           M+R  A S G   KKKGV+FVIDC+KPV+D I++IA+LEKFL ERIKV GKAGALG+SV+
Sbjct: 1   MARVGAKSSGAGAKKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR   KI VN++SNFSKRYLKYLTKKYLKK+N+RDWLRVIASNKD+NVYE+RYF I + 
Sbjct: 61  ITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDE 120

Query: 121 EGEEED 127
               E+
Sbjct: 121 VASYEE 126

[Close]

BLAST of CSPI07G17500 vs. NCBI nr
Match: gi|449436493|ref|XP_004136027.1| (PREDICTED: 60S ribosomal protein L22-2 [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 1.9e-62
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1


Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 126

[Close]

BLAST of CSPI07G17500 vs. NCBI nr
Match: gi|1009148376|ref|XP_015891905.1| (PREDICTED: 60S ribosomal protein L22-2-like [Ziziphus jujuba])

HSP 1 Score: 226.1 bits (575), Expect = 3.5e-56
Identity = 117/126 (92.86%), Postives = 120/126 (95.24%), Query Frame = 1


Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRGAA   GPKGKKKG TFVIDCAKPVEDKIMDIASLEKFL ERIKVGGKAGALG+SVT
Sbjct: 1   MSRGAAT--GPKGKKKGATFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGESVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+KNKITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTREKNKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGE+ED
Sbjct: 121 EGEDED 124

[Close]

BLAST of CSPI07G17500 vs. NCBI nr
Match: gi|449435649|ref|XP_004135607.1| (PREDICTED: 60S ribosomal protein L22-2 [Cucumis sativus])

HSP 1 Score: 225.3 bits (573), Expect = 5.9e-56
Identity = 116/126 (92.06%), Postives = 121/126 (96.03%), Query Frame = 1


Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRG AA  GPKGKKKGVTF IDC+KPVEDKIMDIASLEKFLLERIKVGGKAGALGDSV+
Sbjct: 1   MSRGGAA--GPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+K+KITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRNVYELRYFNIAEN
Sbjct: 61  VTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]

BLAST of CSPI07G17500 vs. NCBI nr
Match: gi|802688857|ref|XP_012082776.1| (PREDICTED: 60S ribosomal protein L22-2 [Jatropha curcas])

HSP 1 Score: 224.9 bits (572), Expect = 7.7e-56
Identity = 117/126 (92.86%), Postives = 120/126 (95.24%), Query Frame = 1


Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRGAAA  G KGKKKG TFVIDCAKPVEDKIMDIASLEKFL ERIKVGGKAGALGDS+T
Sbjct: 1   MSRGAAA--GAKGKKKGATFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSIT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTR+K+KITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]

BLAST of CSPI07G17500 vs. NCBI nr
Match: gi|720011354|ref|XP_010259535.1| (PREDICTED: 60S ribosomal protein L22-2 [Nelumbo nucifera])

HSP 1 Score: 224.9 bits (572), Expect = 7.7e-56
Identity = 116/126 (92.06%), Postives = 119/126 (94.44%), Query Frame = 1


Query: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRG+A   GPKGKKKGVTF IDCAKPVEDKIMDIASLEKFL ERIKVGGKAGALGDS+T
Sbjct: 1   MSRGSAT--GPKGKKKGVTFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSIT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           V RDK+KITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VARDKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

The following BLAST results are available for this feature:

BLAST of CSPI07G17500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL222_ARATH	4.7e-53	84.13	60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1	[more]
RL223_ARATH	5.2e-52	82.54	60S ribosomal protein L22-3 OS=Arabidopsis thaliana GN=RPL22C PE=2 SV=1	[more]
RL221_ARATH	6.3e-42	69.05	Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana GN=RPL22A PE=3 SV=1	[more]
RL22_RAT	2.7e-32	63.64	60S ribosomal protein L22 OS=Rattus norvegicus GN=Rpl22 PE=2 SV=2	[more]
RL22_CHICK	4.6e-32	63.11	60S ribosomal protein L22 OS=Gallus gallus GN=RPL22 PE=2 SV=1	[more]

BLAST of CSPI07G17500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K637_CUCSA	1.3e-62	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G397560 PE=4 SV=1	[more]
A0A067JW95_JATCU	5.4e-56	92.86	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13938 PE=4 SV=1	[more]
A0A0D2T610_GOSRA	7.0e-56	92.86	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G145000 PE=4 SV=1	[more]
M5XE65_PRUPE	9.2e-56	92.06	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013414mg PE=4 SV=1	[more]
A0A0J8BC91_BETVU	9.2e-56	92.06	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g067250 PE=4 S...	[more]

BLAST of CSPI07G17500 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05560.1	2.6e-54	84.13	Ribosomal L22e protein family	[more]
AT5G27770.1	2.9e-53	82.54	Ribosomal L22e protein family	[more]
AT1G02830.1	3.6e-43	69.05	Ribosomal L22e protein family	[more]

BLAST of CSPI07G17500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436493\|ref\|XP_004136027.1\|	1.9e-62	100.00	PREDICTED: 60S ribosomal protein L22-2 [Cucumis sativus]	[more]
gi\|1009148376\|ref\|XP_015891905.1\|	3.5e-56	92.86	PREDICTED: 60S ribosomal protein L22-2-like [Ziziphus jujuba]	[more]
gi\|449435649\|ref\|XP_004135607.1\|	5.9e-56	92.06	PREDICTED: 60S ribosomal protein L22-2 [Cucumis sativus]	[more]
gi\|802688857\|ref\|XP_012082776.1\|	7.7e-56	92.86	PREDICTED: 60S ribosomal protein L22-2 [Jatropha curcas]	[more]
gi\|720011354\|ref\|XP_010259535.1\|	7.7e-56	92.06	PREDICTED: 60S ribosomal protein L22-2 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002671	Ribosomal_L22e

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G17500.1	CSPI07G17500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002671	Ribosomal protein L22e	PANTHER	PTHR10064	60S RIBOSOMAL PROTEIN L22	coord: 1..126 score: 1.3
IPR002671	Ribosomal protein L22e	PFAM	PF01776	Ribosomal_L22e	coord: 16..124 score: 2.9
None	No IPR available	PANTHER	PTHR10064:SF3	SUBFAMILY NOT NAMED	coord: 1..126 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G17500	Cla015071	Watermelon (97103) v1	cpiwmB587
CSPI07G17500	Csa7G397560	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G17500	MELO3C015999	Melon (DHL92) v3.5.1	cpimeB540
CSPI07G17500	ClCG09G005850	Watermelon (Charleston Gray)	cpiwcgB555
CSPI07G17500	Lsi02G024070	Bottle gourd (USVL1VR-Ls)	cpilsiB517
CSPI07G17500	MELO3C015999.2	Melon (DHL92) v3.6.1	cpimedB525
CSPI07G17500	CsaV3_7G029290	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G17500	Cla97C09G168350	Watermelon (97103) v2	cpiwmbB598
CSPI07G17500	Bhi09G000719	Wax gourd	cpiwgoB703
CSPI07G17500	Cucsa.205550	Cucumber (Gy14) v1	cgycpiB325
CSPI07G17500	CmaCh17G010850	Cucurbita maxima (Rimu)	cmacpiB392
CSPI07G17500	CmaCh08G004250	Cucurbita maxima (Rimu)	cmacpiB934
CSPI07G17500	CmoCh17G010600	Cucurbita moschata (Rifu)	cmocpiB381
CSPI07G17500	CmoCh08G004190	Cucurbita moschata (Rifu)	cmocpiB913
CSPI07G17500	Cp4.1LG12g05660	Cucurbita pepo (Zucchini)	cpecpiB163
CSPI07G17500	Cp4.1LG17g06990	Cucurbita pepo (Zucchini)	cpecpiB344

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G17500	Melon (DHL92) v3.6.1	cpimedB557
CSPI07G17500	Cucumber (Gy14) v2	cgybcpiB331
CSPI07G17500	Silver-seed gourd	carcpiB0124
CSPI07G17500	Silver-seed gourd	carcpiB0599
CSPI07G17500	Silver-seed gourd	carcpiB0855
CSPI07G17500	Cucumber (Chinese Long) v3	cpicucB402
CSPI07G17500	Watermelon (97103) v2	cpiwmbB541
CSPI07G17500	Watermelon (97103) v2	cpiwmbB564
CSPI07G17500	Wax gourd	cpiwgoB658
CSPI07G17500	Wax gourd	cpiwgoB666
CSPI07G17500	Wild cucumber (PI 183967)	cpicpiB167
CSPI07G17500	Cucumber (Gy14) v1	cgycpiB106
CSPI07G17500	Cucumber (Chinese Long) v2	cpicuB345
CSPI07G17500	Melon (DHL92) v3.5.1	cpimeB572
CSPI07G17500	Watermelon (Charleston Gray)	cpiwcgB560
CSPI07G17500	Watermelon (97103) v1	cpiwmB593
CSPI07G17500	Bottle gourd (USVL1VR-Ls)	cpilsiB530