Cp4.1LG12g05610 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG12g05610
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHeat shock factor-binding protein 1
LocationCp4.1LG12 : 8060417 .. 8062196 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGGGCATGACTCTGAAGATCCGAAGCAAAGCACGGCTGATATGACGGTTTTTGTGAGTTCATTTTCTTTTCTCTTAGTTCATTCTCTCTGTTTATCCCCATTTGATAGTCAAGCCTACGTTATTTAAAAGGTTGGTGTTATAAAGTTTGTCATTTCCCTTTGACGTATACTCTTGTTCTGTCTAAAATTTGATTCCTAAGGCATTCTTGATTGTTTGTTGCTGGTTTATCGTTAAATTGGTATTTACTCCTCTTCTTTTTTCCAGGTGCAAAATCTTCTTCAACAAATGGTGAGTTTCAGTTAAGTGTAAGTCTCTGGCAGAGAAGTTTATGTCTAACAAAATCTTTTTTATGCAGCAATCTAGGTTCCAAACCATGTCTGACTCCATTATCACAAAGAATATCCTTTCTAAATAATTCTATTTATTTTTAGCATTTCTCTAAAGTCGTAGTTATGATGATTAATTGTTTCCGATACGCTTGGATACATGTTGATTTTTGAGTTTTGCGAAATAACTCGTATATTTATTTATTCGTTTAATAGGCTAGATGGTGCAATTTCTGAGCATTATCATTTTCTTTCACTCTATCAAACAATGATGTGGTGAACGTTATATCAGAATTCGTTTGACTTTAGGTTTTGGAAAAGAAGTAGATTGTAGGATAGCATAGCTTTATTGTAATAACTTATAGTAAATAAGCTTTCCTTAACTTGAGTATACTCGATGAGATGGGGAGCCGCATAAATGAATTGGAGCAGAGCATCAACGATCTAAAATCTGAGATGGGTGTTGAGGGCTCACCGTCGCCGATGACTCCTTCAAAGTCGAGTGCAGATGAAGTGAAGAAAGATGAAGGTTCTGCCTTGAAATAGTTGAGAGTGTATGCTTTATTGTTGAGTTTGATAACTTGCAATATTCTCTTTTTGCTATTGCCTTTGTGAAATTGAAGCCAATGCTTAGGATGAAACAGAAAAGTGCAATATGTTCTAGACTTGTACTTGCTATTTCTGCATGATTTCTTATTGATAATATAGTGATGATTATACTCTATGATGACCTCATACAACAACTACTGCTCATCTCTGGTAACAAAGTAAACACACAACTCGTTAGCTTCGGCAACGAGCAATAGCACTGCAGCCACGGTCGTAGGGGTTAGCCTCAGCACCTGGCTGGCAATTGTAGTAAGATGCTCCTCTGCGTGAGCATGGCACCTTGTTGGCCCTGAGCGCATCGTAGCTTATGTAGTTTACATCGGCCAATATGCGTCTATTGATTTCGGAGTCCATCTGAAATTCAATGTCATCCATCATGCAGTCTGCCATGGAGCCATGACAGGTAGCTAGAGCTCGATCGAGGACCCAACTCGGGCCTTTTGTGGTGGTGGCCAATACTGCAGTGGAGAAGACGATCAGGAATGCAGCGATGAAGCAAAATGGAAGGAGAACAGAAAGCTTGGCCACCATTCTTGCTTTATCTGCTATTCCTGGTATGTCTGTACAACCCCCTTGAATCCTTTATATTGATTTGCAAGCAAGTTGGTTGGAATTGGTCTTCTGATTTTTGTTTATTATTTATATTTGTTTTGTTTTGATCTTTGAAAATTGTCTCATTAATTTGGCTCTGTCCATGAAATGAAATGAGTTGAAAAATAGATTTATTTACACTCTTTATTTTCAAGCATAGACTTATTATGGGTGGAGTAGAGAATAATCTTTATTTTCAGTTTTTATTATTATATTAAAAGTCTAAAGACAGGCTGGAAGCTTTGATTTAA

mRNA sequence

GATGGGCATGACTCTGAAGATCCGAAGCAAAGCACGGCTGATATGACGGTGCAAAATCTTCTTCAACAAATGCAATCTAGGTTCCAAACCATTATACTCGATGAGATGGGGAGCCGCATAAATGAATTGGAGCAGAGCATCAACGATCTAAAATCTGAGATGGGTGTTGAGGGCTCACCGTCGCCGATGACTCCTTCAAAGTCGAGTGCAGATGAAGTGAAGAAAGATGAAGTGATGATTATACTCTATGATGACCTCATACAACAACTACTGCTCATCTCTGGTAACAAAGTAGCTAGAGCTCGATCGAGGACCCAACTCGGGCCTTTTGTGGTGGTGGCCAATACTGCAGTGGAGAAGACGATCAGGAATGCAGCGATGAAGCAAAATGGAAGGAGAACAGAAAGCTTGGCCACCATTCTTGCTTTATCTGCTATTCCTGACAGGCTGGAAGCTTTGATTTAA

Coding sequence (CDS)

GATGGGCATGACTCTGAAGATCCGAAGCAAAGCACGGCTGATATGACGGTGCAAAATCTTCTTCAACAAATGCAATCTAGGTTCCAAACCATTATACTCGATGAGATGGGGAGCCGCATAAATGAATTGGAGCAGAGCATCAACGATCTAAAATCTGAGATGGGTGTTGAGGGCTCACCGTCGCCGATGACTCCTTCAAAGTCGAGTGCAGATGAAGTGAAGAAAGATGAAGTGATGATTATACTCTATGATGACCTCATACAACAACTACTGCTCATCTCTGGTAACAAAGTAGCTAGAGCTCGATCGAGGACCCAACTCGGGCCTTTTGTGGTGGTGGCCAATACTGCAGTGGAGAAGACGATCAGGAATGCAGCGATGAAGCAAAATGGAAGGAGAACAGAAAGCTTGGCCACCATTCTTGCTTTATCTGCTATTCCTGACAGGCTGGAAGCTTTGATTTAA

Protein sequence

DGHDSEDPKQSTADMTVQNLLQQMQSRFQTIILDEMGSRINELEQSINDLKSEMGVEGSPSPMTPSKSSADEVKKDEVMIILYDDLIQQLLLISGNKVARARSRTQLGPFVVVANTAVEKTIRNAAMKQNGRRTESLATILALSAIPDRLEALI
BLAST of Cp4.1LG12g05610 vs. TrEMBL
Match: A0A067H5L4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034185mg PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-22
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 1

Query: 1  DGHDSEDPKQSTADMTV--QNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSEDPKQSTADMTV  QNLLQQMQSRFQT+       +DEMG+RINELEQSINDL++
Sbjct: 2  DGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61

Query: 61 EMGVEGSPSPMTPSKSSADEVKKDE 78
          EMGVEGSPSP+TPSK+++ E K +E
Sbjct: 62 EMGVEGSPSPLTPSKTNSGEGKPEE 86

BLAST of Cp4.1LG12g05610 vs. TrEMBL
Match: A0A067H629_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034185mg PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-22
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 1

Query: 1  DGHDSEDPKQSTADMTV--QNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSEDPKQSTADMTV  QNLLQQMQSRFQT+       +DEMG+RINELEQSINDL++
Sbjct: 15 DGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74

Query: 61 EMGVEGSPSPMTPSKSSADEVKKDE 78
          EMGVEGSPSP+TPSK+++ E K +E
Sbjct: 75 EMGVEGSPSPLTPSKTNSGEGKPEE 99

BLAST of Cp4.1LG12g05610 vs. TrEMBL
Match: V4TVF9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023083mg PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-22
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 1

Query: 1  DGHDSEDPKQSTADMTV--QNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSEDPKQSTADMTV  QNLLQQMQSRFQT+       +DEMG+RINELEQSINDL++
Sbjct: 2  DGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61

Query: 61 EMGVEGSPSPMTPSKSSADEVKKDE 78
          EMGVEGSPSP+TPSK+++ E K +E
Sbjct: 62 EMGVEGSPSPLTPSKTNSGEGKPEE 86

BLAST of Cp4.1LG12g05610 vs. TrEMBL
Match: A0A061DSF3_THECC (Heat shock factor binding protein OS=Theobroma cacao GN=TCM_046983 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.1e-22
Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = 1

Query: 1  DGHDSEDPKQSTADMTV--QNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGH+SED KQSTADMTV  QNLLQQMQSRFQT+       +DEMGSRINELEQSINDLK+
Sbjct: 2  DGHNSEDSKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLKA 61

Query: 61 EMGVEGSPSPMTPSKSSADEVKKDE 78
          EMGVEGSPSP+ PSK  +DE K++E
Sbjct: 62 EMGVEGSPSPLAPSKQKSDEAKQEE 86

BLAST of Cp4.1LG12g05610 vs. TrEMBL
Match: A0A0D2SCE9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G128900 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.0e-20
Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = 1

Query: 1  DGHDSEDPKQSTADMTV--QNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGH SED KQSTADMTV  Q+LLQQMQSRFQT+       +DEMG+R+NELEQSINDLK+
Sbjct: 2  DGHSSEDSKQSTADMTVFVQSLLQQMQSRFQTMSDSIITKIDEMGNRVNELEQSINDLKA 61

Query: 61 EMGVEGSPSPMTPSKSSADEVKKDE 78
          EMGVEGSPSP+ PS    DE K++E
Sbjct: 62 EMGVEGSPSPLAPSNQKLDEAKQEE 86

BLAST of Cp4.1LG12g05610 vs. TAIR10
Match: AT4G15802.1 (AT4G15802.1 heat shock factor binding protein)

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-19
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 1

Query: 1  DGHDSEDPKQSTADMT--VQNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSED KQSTADMT  VQNLLQQMQ+RFQT+       +D+MG RINELEQSINDL++
Sbjct: 2  DGHDSEDTKQSTADMTAFVQNLLQQMQTRFQTMSDSIITKIDDMGGRINELEQSINDLRA 61

Query: 61 EMGVEGSPSPMTPSKSSADEVK 75
          EMGVEG+P    P+  S DE K
Sbjct: 62 EMGVEGTP---PPASKSGDEPK 80

BLAST of Cp4.1LG12g05610 vs. NCBI nr
Match: gi|659101430|ref|XP_008451602.1| (PREDICTED: heat shock factor-binding protein 1 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-24
Identity = 69/85 (81.18%), Postives = 73/85 (85.88%), Query Frame = 1

Query: 1  DGHDSEDPKQSTADMT--VQNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSED KQSTADMT  VQNLLQQMQSRFQT+       +DEMGSRINELEQSINDLK+
Sbjct: 2  DGHDSEDAKQSTADMTIFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLKA 61

Query: 61 EMGVEGSPSPMTPSKSSADEVKKDE 78
          EMGVEGSPSP+ PSKS ADEVKKDE
Sbjct: 62 EMGVEGSPSPLPPSKSVADEVKKDE 86

BLAST of Cp4.1LG12g05610 vs. NCBI nr
Match: gi|449436519|ref|XP_004136040.1| (PREDICTED: heat shock factor-binding protein 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 4.2e-24
Identity = 68/85 (80.00%), Postives = 72/85 (84.71%), Query Frame = 1

Query: 1  DGHDSEDPKQSTADMT--VQNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSED KQSTADMT  VQNLLQQMQSRFQT+       +DEMGSRINELEQSINDLK+
Sbjct: 2  DGHDSEDAKQSTADMTIFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLKA 61

Query: 61 EMGVEGSPSPMTPSKSSADEVKKDE 78
          EMGVEGSPSP+ PSK  ADEVKKDE
Sbjct: 62 EMGVEGSPSPLPPSKPVADEVKKDE 86

BLAST of Cp4.1LG12g05610 vs. NCBI nr
Match: gi|657988926|ref|XP_008386647.1| (PREDICTED: heat shock factor-binding protein 1-like [Malus domestica])

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-22
Identity = 65/85 (76.47%), Postives = 71/85 (83.53%), Query Frame = 1

Query: 1  DGHDSEDPKQSTADMT--VQNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSEDPKQSTADM+  VQNLLQQMQSRFQT+       +DEMGSRINELE SINDLK+
Sbjct: 2  DGHDSEDPKQSTADMSAFVQNLLQQMQSRFQTMSDSIVTKIDEMGSRINELESSINDLKT 61

Query: 61 EMGVEGSPSPMTPSKSSADEVKKDE 78
          EMG+EGSPSPM  SK  ADEVK+DE
Sbjct: 62 EMGMEGSPSPMQQSKPVADEVKQDE 86

BLAST of Cp4.1LG12g05610 vs. NCBI nr
Match: gi|657955052|ref|XP_008368986.1| (PREDICTED: heat shock factor-binding protein 1-like [Malus domestica])

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-22
Identity = 64/85 (75.29%), Postives = 72/85 (84.71%), Query Frame = 1

Query: 1  DGHDSEDPKQSTADMT--VQNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSEDPKQSTADM+  VQNLLQQMQSRFQT+       +DEMGSRINELE SINDLK+
Sbjct: 2  DGHDSEDPKQSTADMSAFVQNLLQQMQSRFQTMSDSIVTKIDEMGSRINELESSINDLKT 61

Query: 61 EMGVEGSPSPMTPSKSSADEVKKDE 78
          EMG+EGSPSPM  SK ++DEVK+DE
Sbjct: 62 EMGMEGSPSPMQQSKPASDEVKQDE 86

BLAST of Cp4.1LG12g05610 vs. NCBI nr
Match: gi|641868615|gb|KDO87299.1| (hypothetical protein CISIN_1g034185mg [Citrus sinensis])

HSP 1 Score: 114.4 bits (285), Expect = 1.8e-22
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 1

Query: 1  DGHDSEDPKQSTADMTV--QNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSEDPKQSTADMTV  QNLLQQMQSRFQT+       +DEMG+RINELEQSINDL++
Sbjct: 15 DGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 74

Query: 61 EMGVEGSPSPMTPSKSSADEVKKDE 78
          EMGVEGSPSP+TPSK+++ E K +E
Sbjct: 75 EMGVEGSPSPLTPSKTNSGEGKPEE 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A067H5L4_CITSI1.2e-2274.12Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034185mg PE=4 SV=1[more]
A0A067H629_CITSI1.2e-2274.12Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034185mg PE=4 SV=1[more]
V4TVF9_9ROSI1.2e-2274.12Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023083mg PE=4 SV=1[more]
A0A061DSF3_THECC2.1e-2274.12Heat shock factor binding protein OS=Theobroma cacao GN=TCM_046983 PE=4 SV=1[more]
A0A0D2SCE9_GOSRA2.0e-2069.41Uncharacterized protein OS=Gossypium raimondii GN=B456_007G128900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G15802.11.5e-1967.07 heat shock factor binding protein[more]
Match NameE-valueIdentityDescription
gi|659101430|ref|XP_008451602.1|1.1e-2481.18PREDICTED: heat shock factor-binding protein 1 [Cucumis melo][more]
gi|449436519|ref|XP_004136040.1|4.2e-2480.00PREDICTED: heat shock factor-binding protein 1 isoform X2 [Cucumis sativus][more]
gi|657988926|ref|XP_008386647.1|1.4e-2276.47PREDICTED: heat shock factor-binding protein 1-like [Malus domestica][more]
gi|657955052|ref|XP_008368986.1|1.4e-2275.29PREDICTED: heat shock factor-binding protein 1-like [Malus domestica][more]
gi|641868615|gb|KDO87299.1|1.8e-2274.12hypothetical protein CISIN_1g034185mg [Citrus sinensis][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003714transcription corepressor activity
Vocabulary: INTERPRO
TermDefinition
IPR009643HS1-bd
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045892 negative regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003714 transcription corepressor activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g05610.1Cp4.1LG12g05610.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009643Heat shock factor binding 1PANTHERPTHR19424HEAT SHOCK FACTOR BINDING PROTEIN 1coord: 1..74
score: 3.1
IPR009643Heat shock factor binding 1PFAMPF06825HSBP1coord: 16..54
score: 3.9
NoneNo IPR availableunknownCoilCoilcoord: 33..53
scor
NoneNo IPR availablePANTHERPTHR19424:SF0HEAT SHOCK FACTOR BINDING PROTEIN 1coord: 1..74
score: 3.1

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g05610Cp4.1LG17g07150Cucurbita pepo (Zucchini)cpecpeB157