Carg07185 (gene) Silver-seed gourd

NameCarg07185
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionheat shock factor-binding protein 1-like
LocationCucurbita_argyrosperma_scaffold_017 : 524222 .. 526884 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGGCAAAATGGTAACTTCGTAGAAAGTGGGGGCGAAATGAGCATCACTTAAGCAAGCAAGACAGCCATTCGCCACATTCGTCTTTCGCATTCTTCACCCGCTAACCAGACGATTGGGCATCGCGAGTTTTAGCATTATCTCCCGATTGTCTCTTGAAGATCCAGTTTTGCAGTTATGGTGAGCGTTTTCCCTTCTTCAACCTCATTCCATTCAATTACGCTTCTTCACTGTTGAATGTCATTTCTCTCGTGTTTTCAATTCGCATAGCTTAGTTGTGAAACTTTTGATGGAATGCGAAATCCCTTCGGGTTTCCTTATTCTTCTGACATGAATTTCTGTTGTGAATTTTATTCGCGTGGTCGTCAAATGATTCTGTTCAGCTTTAGTTGTTGAATCGTCTTGTAACCTTTTGCTCACTTTGAACAATGCCCATTAGATCACCTAGGTTTTAGATACTAAAGGTTGGTTTGGGGTTCGGTTGTTAGTGACTTTCTTGTGGGGCTCATGTTTTCAACTTTTGAATCGATGGATGGTTCAAAGCTTCGTCTCCTCGTTAATGTGATAATGTGTTAAGATTTCAATCTCTCTGGGATTTTTTAAAAAGCTGCGGTTGTTGATTTGGTCGATGTCTGCATGCCATGTAGTATGGTGTGGTTTTGCAATTGAGAGATCGAATCTTCTCGATAGTGTGTGGATCCTTGTGTCTTCTCGATAGTATTTGCTTGTGGATCCTCCCTTTTTCATATGATTGTCTTTTCCTTTTGTCAAATCCCTTATTTTTCTCATGGGAGGATGAGCACACTTGACCATATCCAAATATTGTCTTCTGCCCTTCTAGGCCCTTATGGTGCAACGTGAATCATGTTCTAAGGGGGGTTCTTAGTTTCCTGAGTCAATTTGGGACATATTTTTGGAGGCTTTGGTGTCCAAGTGACCCGTATCAGTTCGGATAAGGCTGTGACGTAGTAGGTCTGATTCCACCCGTTTCGAGATAGAGGGATGTTTCTTTAGCATGTTGCTTTCTTTGTGGTCTTATGGAATATCTAGCTTGAAAGAAATAGAATGATACTTGGGTATGGAGAGTTCTAGGGGGGAAATTTGGGCCTTGGCTAGGTTTGCCTCCTTCTAGGTCTTGGCTACTAAGGATTTTTGCGATTACCCTTTATCCATCATCCTTTTGAGCTATAGCCCCTTTTCGTAATTTTGTATATTGTTAACTTTTTTGTTTTTGGGTCTTTTTGTATTGCCCTTGTATATTCTCTTAGTTGTGGCTGATTGCTTTTGGGAGGGTAAAGATCATTTGACCATGTCCAGGGACCAAAACATCAGTTTTCTAGGTTATTTTGATCACTGTTTTATGTATAGATTGCTACTGATTTCTATTCCCATATAATTTTAACATACTCGAATCAGACTGTTAAATGTAATTGTCAATACTGAAGATGTTTGATGCTTGATCTTAATTCTTTTTCAAGATTGTCACCCACCACCTCCGATGGTTCTTATTTGTTTGACTTATTATTGTTCATATTATTTGACTGGTTTTTTTTTGTACCATTGTGTGACAGTGTGAAATACACGTCTTACTCTTTTTGTCCTGCAGGATGGGCATGACTCTGAAGATCCGAAGCAAAGCACGGCTGATATGACGGTTTTTGTGAGTTCATTTTCTTTTCTTTTAGTTCATTCTCTCTGTTTATCCCCATTTGATTGTCAAGCCTACGTCATTTAAAAGGTTGGTGTTATAAGGTTTGTCATTTCCCTTTGACGTATACTCTTGTTCTGTCTAAAATTTGATTCATAAGGCATTCTTGATTGTTTCTTGCTGGTTTATAGATTGGTATTCACTGGCCCCTTTTTTTTTTGCAGGTGCAAAATCTTCTTCAACAGATGGTGAGTCTCAGTTAAGTGTAAGTCTCTGGCAGAGAAGTTTATGTCTAACAAAATCCTTTTTATGCAGCAATCTAGGTTCCAAACCATGTCTGACTCCATTATCACAAAGAATATCCTTTCTAAATAATTCTATTTATTTCTAGCATTTCTCTAAAGTCGTAATTATGATGATTAATTGTTTCCGATACGCTTGGATACATGTTGATTTTTGAGTTTTGCGAAATAACTCGTATATTTATTTATTCGTTTAATAGGCTAGATGGTGCCATTTCTGAGCATTATCATTTTCTTTCACTCTATCAAACAATGATCTGGTGAACGTTGTATCAGAATTCGTTTGACTTTCTAGTACAGCTTTTGGAAAAGAAGTAGATTGTAGGATAGCATAGCTTTCTTGTAATAACTTATAGTAAATAAGCTTTCCTTAACTTGAGTATACTCGATGAGATGGGGAGCCGCATAAATGAATTGGAGCAGAGCATCAACGATCTAAAATCTGAGATGGGTGTTGAGGGCTCACCGTCGCCGATGACTCCTTCAAAGTCGAGTGCAGATGAAGTGAAGAAAGATGAAGGTTCTGCCTTGAAATAGTTGAGAGTGTATGCTTTATTGTTGAGTTTGATAACTTGCAATATTCTCTTTTTGCTATTGCCTTTGTGAAATTGAAGCCAATGCTTAGGATGAAACAGAAAAGTGCAATATGTTCTAGACTTGTACTTGCTATTTCTGCATGATTTCTTATTGATAATATAGTGATGATTATACTCT

mRNA sequence

AATGGCAAAATGGTAACTTCGTAGAAAGTGGGGGCGAAATGAGCATCACTTAAGCAAGCAAGACAGCCATTCGCCACATTCGTCTTTCGCATTCTTCACCCGCTAACCAGACGATTGGGCATCGCGAGTTTTAGCATTATCTCCCGATTGTCTCTTGAAGATCCAGTTTTGCAGTTATGGATGGGCATGACTCTGAAGATCCGAAGCAAAGCACGGCTGATATGACGGTTTTTGCATTCTTGATTGTTTCTTGCTGGTTTATAGATTGTATACTCGATGAGATGGGGAGCCGCATAAATGAATTGGAGCAGAGCATCAACGATCTAAAATCTGAGATGGGTGTTGAGGGCTCACCGTCGCCGATGACTCCTTCAAAGTCGAGTGCAGATGAAGTGAAGAAAGATGAAGGTTCTGCCTTGAAATAGTTGAGAGTGTATGCTTTATTGTTGAGTTTGATAACTTGCAATATTCTCTTTTTGCTATTGCCTTTGTGAAATTGAAGCCAATGCTTAGGATGAAACAGAAAAGTGCAATATGTTCTAGACTTGTACTTGCTATTTCTGCATGATTTCTTATTGATAATATAGTGATGATTATACTCT

Coding sequence (CDS)

ATGGATGGGCATGACTCTGAAGATCCGAAGCAAAGCACGGCTGATATGACGGTTTTTGCATTCTTGATTGTTTCTTGCTGGTTTATAGATTGTATACTCGATGAGATGGGGAGCCGCATAAATGAATTGGAGCAGAGCATCAACGATCTAAAATCTGAGATGGGTGTTGAGGGCTCACCGTCGCCGATGACTCCTTCAAAGTCGAGTGCAGATGAAGTGAAGAAAGATGAAGGTTCTGCCTTGAAATAG

Protein sequence

MDGHDSEDPKQSTADMTVFAFLIVSCWFIDCILDEMGSRINELEQSINDLKSEMGVEGSPSPMTPSKSSADEVKKDEGSALK
BLAST of Carg07185 vs. NCBI nr
Match: KHG15379.1 (Hsbp1l1 [Gossypium arboreum])

HSP 1 Score: 102.1 bits (253), Expect = 9.5e-19
Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 0

Query: 1  MDGHDSEDPKQSTADMTVF-------AFLIVSCWFIDC--ILDEMGSRINELEQSINDLK 60
          MDGH SED KQSTADMTVF        + +   +F  C   LDEMG+R+NELEQSINDLK
Sbjct: 1  MDGHSSEDSKQSTADMTVFIAKPDHSLYWMCKVFFNKCNLALDEMGNRVNELEQSINDLK 60

Query: 61 SEMGVEGSPSPMTPSKSSADEVKKDEGSA 81
          +EMGVEGSPSP+ PS   +DE K++EGSA
Sbjct: 61 AEMGVEGSPSPLAPSNQKSDEAKQEEGSA 89

BLAST of Carg07185 vs. NCBI nr
Match: KHG15380.1 (Hsbp1 [Gossypium arboreum])

HSP 1 Score: 99.8 bits (247), Expect = 4.7e-18
Identity = 55/91 (60.44%), Postives = 65/91 (71.43%), Query Frame = 0

Query: 1  MDGHDSEDPKQSTADMTVFAFLIV------SCWFIDCI-----LDEMGSRINELEQSIND 60
          MDGH SED KQSTADMTVF   ++        W I  +     LDEMG+R+NELEQSIND
Sbjct: 1  MDGHSSEDSKQSTADMTVFVQSLLQQMYYCELWDIYFLLNSKALDEMGNRVNELEQSIND 60

Query: 61 LKSEMGVEGSPSPMTPSKSSADEVKKDEGSA 81
          LK+EMGVEGSPSP+ PS   +DE K++EGSA
Sbjct: 61 LKAEMGVEGSPSPLAPSNQKSDEAKQEEGSA 91

BLAST of Carg07185 vs. NCBI nr
Match: XP_016709981.1 (PREDICTED: heat shock factor-binding protein 1-like [Gossypium hirsutum])

HSP 1 Score: 99.0 bits (245), Expect = 8.0e-18
Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 0

Query: 1  MDGHDSEDPKQSTADMTVFAFLIVSCW------FIDCI---LDEMGSRINELEQSINDLK 60
          MDGH SED KQSTADMTVF   ++            CI   +DEMG+R+NELEQSINDLK
Sbjct: 1  MDGHSSEDSKQSTADMTVFVQSLLQQMQSRFQTMSGCIITKIDEMGNRVNELEQSINDLK 60

Query: 61 SEMGVEGSPSPMTPSKSSADEVKKDEGSA 81
          +EMGVEGSPSP+ PS   +DE K++EGSA
Sbjct: 61 AEMGVEGSPSPLAPSNQKSDEAKQEEGSA 89

BLAST of Carg07185 vs. NCBI nr
Match: XP_017628155.1 (PREDICTED: heat shock factor-binding protein 1-like protein 1 isoform X1 [Gossypium arboreum])

HSP 1 Score: 99.0 bits (245), Expect = 8.0e-18
Identity = 57/94 (60.64%), Postives = 65/94 (69.15%), Query Frame = 0

Query: 1  MDGHDSEDPKQSTADMTVFA--------------FLIVSCWFIDCILDEMGSRINELEQS 60
          MDGH SED KQSTADMTVF               F I+S   I  I DEMG+R+NELEQS
Sbjct: 1  MDGHSSEDSKQSTADMTVFVQSLLQQMILLQQSRFQIMSDSIITKI-DEMGNRVNELEQS 60

Query: 61 INDLKSEMGVEGSPSPMTPSKSSADEVKKDEGSA 81
          INDLK+EMGVEGSPSP+ PS   +DE K++EGSA
Sbjct: 61 INDLKAEMGVEGSPSPLAPSNQKSDEAKQEEGSA 93

BLAST of Carg07185 vs. NCBI nr
Match: KDP28134.1 (hypothetical protein JCGZ_13905 [Jatropha curcas])

HSP 1 Score: 96.3 bits (238), Expect = 5.2e-17
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 0

Query: 1   MDGHDSEDPKQSTADMTVFAFLIVSCWFIDCILDEMGSRINELEQSINDLKSEMGVEGSP 60
           +DGHDSEDPKQSTADMT F    + C+     LDEMGSRIN+LEQSINDL++EMGVEGSP
Sbjct: 57  VDGHDSEDPKQSTADMTAF----IICFLNFNALDEMGSRINDLEQSINDLRAEMGVEGSP 116

Query: 61  SPMTPSK-SSADEVKKDEGSA 81
           SP+ PSK     E K++E SA
Sbjct: 117 SPLPPSKQKQPGEEKQEEDSA 133

BLAST of Carg07185 vs. TAIR10
Match: AT4G15802.1 (heat shock factor binding protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-14
Identity = 47/89 (52.81%), Postives = 56/89 (62.92%), Query Frame = 0

Query: 1  MDGHDSEDPKQSTADMTVFAFLIVS------CWFIDCI---LDEMGSRINELEQSINDLK 60
          MDGHDSED KQSTADMT F   ++           D I   +D+MG RINELEQSINDL+
Sbjct: 1  MDGHDSEDTKQSTADMTAFVQNLLQQMQTRFXXXSDSIITKIDDMGGRINELEQSINDLR 60

Query: 61 SEMGVEGSPSPMTPSKSSADEVKKDEGSA 81
          +EMGVEG+P    P+  S DE K    S+
Sbjct: 61 AEMGVEGTP---PPASKSGDEPKTPASSS 86

BLAST of Carg07185 vs. Swiss-Prot
Match: sp|Q8GW48|HSBP_ARATH (Heat shock factor-binding protein OS=Arabidopsis thaliana OX=3702 GN=HSBP PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-13
Identity = 47/89 (52.81%), Postives = 56/89 (62.92%), Query Frame = 0

Query: 1  MDGHDSEDPKQSTADMTVFAFLIVS------CWFIDCI---LDEMGSRINELEQSINDLK 60
          MDGHDSED KQSTADMT F   ++           D I   +D+MG RINELEQSINDL+
Sbjct: 1  MDGHDSEDTKQSTADMTAFVQNLLQQMQTRFXXXSDSIITKIDDMGGRINELEQSINDLR 60

Query: 61 SEMGVEGSPSPMTPSKSSADEVKKDEGSA 81
          +EMGVEG+P    P+  S DE K    S+
Sbjct: 61 AEMGVEGTP---PPASKSGDEPKTPASSS 86

BLAST of Carg07185 vs. TrEMBL
Match: tr|A0A0B0NU96|A0A0B0NU96_GOSAR (Hsbp1l1 OS=Gossypium arboreum OX=29729 GN=F383_17180 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.3e-19
Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 0

Query: 1  MDGHDSEDPKQSTADMTVF-------AFLIVSCWFIDC--ILDEMGSRINELEQSINDLK 60
          MDGH SED KQSTADMTVF        + +   +F  C   LDEMG+R+NELEQSINDLK
Sbjct: 1  MDGHSSEDSKQSTADMTVFIAKPDHSLYWMCKVFFNKCNLALDEMGNRVNELEQSINDLK 60

Query: 61 SEMGVEGSPSPMTPSKSSADEVKKDEGSA 81
          +EMGVEGSPSP+ PS   +DE K++EGSA
Sbjct: 61 AEMGVEGSPSPLAPSNQKSDEAKQEEGSA 89

BLAST of Carg07185 vs. TrEMBL
Match: tr|A0A0B0NRD0|A0A0B0NRD0_GOSAR (Hsbp1 OS=Gossypium arboreum OX=29729 GN=F383_17180 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.1e-18
Identity = 55/91 (60.44%), Postives = 65/91 (71.43%), Query Frame = 0

Query: 1  MDGHDSEDPKQSTADMTVFAFLIV------SCWFIDCI-----LDEMGSRINELEQSIND 60
          MDGH SED KQSTADMTVF   ++        W I  +     LDEMG+R+NELEQSIND
Sbjct: 1  MDGHSSEDSKQSTADMTVFVQSLLQQMYYCELWDIYFLLNSKALDEMGNRVNELEQSIND 60

Query: 61 LKSEMGVEGSPSPMTPSKSSADEVKKDEGSA 81
          LK+EMGVEGSPSP+ PS   +DE K++EGSA
Sbjct: 61 LKAEMGVEGSPSPLAPSNQKSDEAKQEEGSA 91

BLAST of Carg07185 vs. TrEMBL
Match: tr|A0A1U8L5U4|A0A1U8L5U4_GOSHI (heat shock factor-binding protein 1-like OS=Gossypium hirsutum OX=3635 GN=LOC107924177 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.3e-18
Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 0

Query: 1  MDGHDSEDPKQSTADMTVFAFLIVSCW------FIDCI---LDEMGSRINELEQSINDLK 60
          MDGH SED KQSTADMTVF   ++            CI   +DEMG+R+NELEQSINDLK
Sbjct: 1  MDGHSSEDSKQSTADMTVFVQSLLQQMQSRFQTMSGCIITKIDEMGNRVNELEQSINDLK 60

Query: 61 SEMGVEGSPSPMTPSKSSADEVKKDEGSA 81
          +EMGVEGSPSP+ PS   +DE K++EGSA
Sbjct: 61 AEMGVEGSPSPLAPSNQKSDEAKQEEGSA 89

BLAST of Carg07185 vs. TrEMBL
Match: tr|A0A067K8K4|A0A067K8K4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13905 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.4e-17
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 0

Query: 1   MDGHDSEDPKQSTADMTVFAFLIVSCWFIDCILDEMGSRINELEQSINDLKSEMGVEGSP 60
           +DGHDSEDPKQSTADMT F    + C+     LDEMGSRIN+LEQSINDL++EMGVEGSP
Sbjct: 57  VDGHDSEDPKQSTADMTAF----IICFLNFNALDEMGSRINDLEQSINDLRAEMGVEGSP 116

Query: 61  SPMTPSK-SSADEVKKDEGSA 81
           SP+ PSK     E K++E SA
Sbjct: 117 SPLPPSKQKQPGEEKQEEDSA 133

BLAST of Carg07185 vs. TrEMBL
Match: tr|A0A0B0P429|A0A0B0P429_GOSAR (Heat shock factor-binding 1 OS=Gossypium arboreum OX=29729 GN=F383_25423 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.5e-17
Identity = 51/80 (63.75%), Postives = 62/80 (77.50%), Query Frame = 0

Query: 1  MDGHDSEDPKQSTADMTVFAFLIVSCWFIDCILDEMGSRINELEQSINDLKSEMGVEGSP 60
          MDG +S+D KQSTADMTVF   ++        LD+MG+RINELEQSINDLK+EMGVEG+ 
Sbjct: 1  MDGQNSDDSKQSTADMTVFVQNLLQQM---VTLDDMGNRINELEQSINDLKAEMGVEGTS 60

Query: 61 SPMTPSKSSADEVKKDEGSA 81
          SP+ PSK  +DE K+DEGSA
Sbjct: 61 SPLDPSKQKSDEAKQDEGSA 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KHG15379.19.5e-1961.80Hsbp1l1 [Gossypium arboreum][more]
KHG15380.14.7e-1860.44Hsbp1 [Gossypium arboreum][more]
XP_016709981.18.0e-1860.67PREDICTED: heat shock factor-binding protein 1-like [Gossypium hirsutum][more]
XP_017628155.18.0e-1860.64PREDICTED: heat shock factor-binding protein 1-like protein 1 isoform X1 [Gossyp... [more]
KDP28134.15.2e-1765.43hypothetical protein JCGZ_13905 [Jatropha curcas][more]
Match NameE-valueIdentityDescription
AT4G15802.11.0e-1452.81heat shock factor binding protein[more]
Match NameE-valueIdentityDescription
sp|Q8GW48|HSBP_ARATH1.8e-1352.81Heat shock factor-binding protein OS=Arabidopsis thaliana OX=3702 GN=HSBP PE=1 S... [more]
Match NameE-valueIdentityDescription
tr|A0A0B0NU96|A0A0B0NU96_GOSAR6.3e-1961.80Hsbp1l1 OS=Gossypium arboreum OX=29729 GN=F383_17180 PE=4 SV=1[more]
tr|A0A0B0NRD0|A0A0B0NRD0_GOSAR3.1e-1860.44Hsbp1 OS=Gossypium arboreum OX=29729 GN=F383_17180 PE=4 SV=1[more]
tr|A0A1U8L5U4|A0A1U8L5U4_GOSHI5.3e-1860.67heat shock factor-binding protein 1-like OS=Gossypium hirsutum OX=3635 GN=LOC107... [more]
tr|A0A067K8K4|A0A067K8K4_JATCU3.4e-1765.43Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13905 PE=4 SV=1[more]
tr|A0A0B0P429|A0A0B0P429_GOSAR4.5e-1763.75Heat shock factor-binding 1 OS=Gossypium arboreum OX=29729 GN=F383_25423 PE=4 SV... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003714transcription corepressor activity
Vocabulary: INTERPRO
TermDefinition
IPR009643HS1-bd
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045892 negative regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003714 transcription corepressor activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07185-RACarg07185-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 33..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..82
NoneNo IPR availablePANTHERPTHR19424:SF0HEAT SHOCK FACTOR BINDING PROTEINcoord: 33..74
IPR009643Heat shock factor binding 1PANTHERPTHR19424HEAT SHOCK FACTOR BINDING PROTEIN 1coord: 33..74

The following gene(s) are paralogous to this gene:

None