MELO3C016019 (gene) Melon (DHL92) v3.5.1

NameMELO3C016019
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionHeat shock factor binding protein
Locationchr1 : 31214891 .. 31219038 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGCAGCCATTCCCCATATTCTCAATCCTCACTCATCACCCGCTCGTTAACTTGACGATTGGGCACCGCGAATCTTACAATAAACTCCCGATTGTTTCTTGAAGATCCAGTTTTTGCAGCAATGGTGAGCATTTTTCCTTCTTTAACCCATTCCCATTCAATTACGCTTCTTCACTGTTGAATGTGAATGCCATTGCTCTCGTGTTTCCATTTCGCTAGCTTAGATTTGAAACTTTTGAAACAACTTACACTTCTTTATTGATTTCTGCTTTGAATTTTTATTCATGTGGTTGTTTAATGATTCTGTTTCAGCTTTAGTTGCTCAATCGTCTTGTAACTTTTTGCTCACTTTGAACAATGCCTCATTAGATCACTTTAGGTTTTAGACACTATGACGTTGGTTTGGGGTTCGGTTACTCGTGACTCTCTTGTGGGGTTCATGTTTCTATTGATGTTTGTAAGATTCGTCTTCTTGGTCGTGTGGTTAAATTTAGAGATTTGAAAATTTTTTTAAAAAAATTTATTTATTTGGTTGATGTCTGAATGCCATGTGATATGTTGTAGATTTTTTTTTTGCTCAGTGGCTGAAATGAATCACTCACTGCTGAGGAAGTTACTGGAGATTTAGCATTTTTATAAGATGGAAGAGGTTATTTTTAAGATTTATTTTTAAAACTCTTACGAGTTGATTGGGTATTCTTTTTGGTACAAGTTTGTGTAAGGAGGGTTTTGGGTTTTTGAGATCTTTTATTTGGTCAATTGTCTCTGGTTGATACGCTTCTGTACTTGGATTAATGGAATGGGTATAAGTAAAACATTTGCTGCTGGTGGTTTAGGTGCCGTCGTTCTTTTTCCTGGTGGAGGTTGCTTTATAGGTTGGTGTTTAGAGGGGTAGATGGGGACTTAGTTGAAGATTTCCACGTGAGAAAGTATAGAGGTCAATTCACCCGTGTTTAGTTTGTAGATGATAGATGATACTGTTCTTGTTAACTTGAACCAAGCCTGCATATCTTTGATGTCAATATTTGGCATAGAGGTGTCTCGGAGAAGTATTTTTTTTGGAGTTTAAAGTTTCTTATTTGCTCTATCGCTACCTGGGTTTTTTGATGAGTTCACAATCCTCAGTCTTTTTTTTTTTGTTTTGGCTTTGTCGTGGGAAAGGTTGAAATGATTTTATTATATTTTAATATTTTAATTTTATATAAGAAACCTTTATTTTCTGAAGTAGGGAGGTTAAATTTCGTTCAATATGTTTTTGTTTTAGTCCTCCTCTATTTCTTATCCTATTCTAGTTTAGAATTGATTCTTTCATCTGTAGGAGGGTGGAGAAATGGATTTTTTATGGAAGGGTTAGAGGGACTGAGTGTGTTGGGTACTTAATCACCTTGGAGAACCACAGCCCAAAAGCGAATTGATTCTTTCATCTGTAAGAGGGTGGAGAAATGGATTTTTTGTGGAAGGGTTAGGGGGACTGGGTGGGTATGTTAGGTACTTAATAACCTTGGAGAACCACACCCCAAAAGCCAGCTATCGAAGTGAGAGAGCCAAGCAACTTAAGAACCACATTCATGCTTTGATAATCAATAGTGTTTACTTGTGGATCCTCTCGTTTTCATATGATTGTCCTTTCCCTTTTATCAAATCCCTTACTTTTCTCATGGGTGGATTATCACCATTGACTATATCCAAGATTGTCTTCTGTCCTTCTAGGCCCTTATGGTGCAAAGTGTGGATCATTTTCTTTGGTGTTTTTAGTTTTTGGAAGCACGTTGGGACACATTTGGGGAGGTTTTTGGTGTCCAAGTGACCCGTAGGAGTTTGGATAAGGCTGTGATGGAGTAGATCACTAGGTCTTATACCACCCTCTGTTCTGAAATTGAGGGATGGCTCTTTGGCATGTTGCTCTCTCTGTGATCTTATGAAATATTTTATGAAGTATCTAGCCTGAAAGAACTAGTAGGATAGTTAGGCACGGAGAGTTTTTTGGGAGGAGATTTGGACCTTGTTTAGGTTTGCCTCCATTTAGGTCCTGGTTATGAAGGATTTTTGAGCTTATGCTTTATCTTTACTTTTTTTTTTTTTTTTTTTTTTGTAGTTATTAGCTTTCTTTGTATCCCGTTGTATATTCTTTTAGTTGTGGCTATGGCTGATTTCTTTTGGGAGGATAAAGGACATTTGATTTCCAGTGGCCAAGACATCAGTTTTCAAGGTTGTTTTAATCATTATTTATCTTTGGAGTGCTACTGATTTCTGTTCCCTCATGGTTTTACAACTGCCGATCTGATTGTTAAATGTAATTGTCACAACTGAAGATGTTTGCTGCTTGATCTTAATTCTTTTTCAGGATTATCACCCTCCACCTCAATGATTCTTATTTGTTTGACTTGTTATTATTGATCGTTTTATTTGGCTGGTTTGTTTCATTGTATGAGATTGTGAAGTGCACATTCTTACTTTTTTATCTTGCAGGATGGGCATGACTCTGAAGATGCAAAGCAAAGCACGGCTGACATGACCATTTTTGTGAGTTCATTTTCTTTTCTTTCGGTGCATTCTTTTTGTTCTTCCCCATTTGATCGTCAACCTAACTTATTGGAAGGTTGGTTCCATGACGTCTATCATTTTCCCCTTGACGAATGCTCTTGTTCTGTCTAAAATTCAACCCTTAAGGCACTTTAATTGTTTTATGATGGTTTATCTTTAAATTGGTGTTAACCTTTTTTTTTTTTTCCTCTCCAGGTGCAAAATCTTCTTCAACAAATGGTGAGTTTTAGTTAGTGTAAGTTTCTGTCAGAGAAATTTATGTCTAACAATATCTTTTTTATGCAGCAATCTAGGTTCCAAACCATGTCCGACTCCATTATCACAAAGAATATCCTTTCAAAATACTTGTATTTATTTTTAGCGTTTCCCTAAAGTTGGAGTTATCATGAGTAATTTTTTCTGATAGGCTTGCATACATTTTGAGTTGTAACTGCTGCAAAATAGATCATATAATTATTTATTTGTTAATATAGACTAGATAGGGCAATTTTCTGAGTATTATCATTTTTCTTTTCACTCTAGCTAACAATGATCTAGTAAAAGTTACATATAGTTGAAACATTCTTATAGGGGAACAATATTAATGATTTTGAAATGCATTCATTGAATATTTATGAACCTTATTTTTTCTAATGAGGCATTTGAAATCAGTACAATCTGAGATCCTCTATATAATTCACCTTGGTTGCTATTTAGAATGTTTTGACTTTCTAATACAACTTTGGGTTTCAGATACATTGGAAGAGAAGTAGATTGTAGGATAGCTTTATTGTAATTAGTTAACTTATAGTAAATAAGCTTTCTTTAACTTGAATATACTCGATGAGATGGGGAGCCGCATAAATGAATTGGAGCAGAGCATCAATGATCTAAAGGCCGAGATGGGTGTCGAGGGCTCTCCGTCACCACTACCTCCATCAAAGTCAGTTGCAGATGAAGTGAAGAAAGATGAAGGTTCTGCCTAGAAATAGTTGAGAGTTTCATTTTATTGATGAGTTTGTTGCAATATTCTCTTTTTGCTATTGCCTTTGTGAAGTTGAAACCAATGCTTAGAATGAAACAGAAAAGAGCAATATGATATAAACTTGGACTTGCTGTTTCTGCATGATTTCTTATTGATAATATAGTGATGATTATACTCTATGATGACTTCATACAACTACTACTACCCATATCTGGTGAAACAGTAAACACAGCTAGTTAGCTTCGACAACGAGAAATAGCATTACAGCCACGGTCATAGGGGTTTGCCTCGGCACCTGGCTGACAGTTGTAGTAAGATGCTCCTTTGCGTGAGCATGGCACTGAGTTGGCCCTGAGTGCATCATAGCTTATGTAGTTTAAATCTGCTAATATGCGTCTGTTGATCTCAGAGTCCATCTCAAATTCAATATCTTCCTTCATACACTCTGCCATGGATCCGTGACAACGAGCATGAGCTCCACCTAGGACCCAGCTCGGGGTCGTGGCCGTGGAGGAGACCGTCAGGATAGCAACTAGTAAGAAAATTGGAAGAAGAAAAGAAACCTTGGCGGCCATTGTTGCTTTCTCTCTTGCTCTTCCCGGTATGTCTATACAATCCACTTCTTTAATCATTTATATT

mRNA sequence

AAGGCAGCCATTCCCCATATTCTCAATCCTCACTCATCACCCGCTCGTTAACTTGACGATTGGGCACCGCGAATCTTACAATAAACTCCCGATTGTTTCTTGAAGATCCAGTTTTTGCAGCAATGGATGGGCATGACTCTGAAGATGCAAAGCAAAGCACGGCTGACATGACCATTTTTGTGCAAAATCTTCTTCAACAAATGGTTCCAAACCATGTCCGACTCCATTATCACAAAGATCGATGAGATGGGGAGCCGCATAAATGAATTGGAGCAGAGCATCAATGATCTAAAGGCCGAGATGGGTGTCGAGGGCTCTCCGTCACCACTACCTCCATCAAAGTCAGTTGCAGATGAAGTGAAGAAAGATGAAGGTTCTGCCTAGAAATAGTTGAGAGTTTCATTTTATTGATGAGTTTGTTGCAATATTCTCTTTTTGCTATTGCCTTTGTGAAGTTGAAACCAATGCTTAGAATGAAACAGAAAAGAGCAATATGATATAAACTTGGACTTGCTGTTTCTGCATGATTTCTTATTGATAATATAGTGATGATTATACTCTATGATGACTTCATACAACTACTACTACCCATATCTGGTGAAACAGTAAACACAGCTAGTTAGCTTCGACAACGAGAAATAGCATTACAGCCACGGTCATAGGGGTTTGCCTCGGCACCTGGCTGACAGTTGTAGTAAGATGCTCCTTTGCGTGAGCATGGCACTGAGTTGGCCCTGAGTGCATCATAGCTTATGTAGTTTAAATCTGCTAATATGCGTCTGTTGATCTCAGAGTCCATCTCAAATTCAATATCTTCCTTCATACACTCTGCCATGGATCCGTGACAACGAGCATGAGCTCCACCTAGGACCCAGCTCGGGGTCGTGGCCGTGGAGGAGACCGTCAGGATAGCAACTAGTAAGAAAATTGGAAGAAGAAAAGAAACCTTGGCGGCCATTGTTGCTTTCTCTCTTGCTCTTCCCGGTATGTCTATACAATCCACTTCTTTAATCATTTATATT

Coding sequence (CDS)

ATGTCCGACTCCATTATCACAAAGATCGATGAGATGGGGAGCCGCATAAATGAATTGGAGCAGAGCATCAATGATCTAAAGGCCGAGATGGGTGTCGAGGGCTCTCCGTCACCACTACCTCCATCAAAGTCAGTTGCAGATGAAGTGAAGAAAGATGAAGGTTCTGCCTAG

Protein sequence

MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSVADEVKKDEGSA*
BLAST of MELO3C016019 vs. TrEMBL
Match: A0A061DSF3_THECC (Heat shock factor binding protein OS=Theobroma cacao GN=TCM_046983 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.4e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 1

Query: 1  MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSVADEVKKDEGSA 57
          MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPL PSK  +DE K++EGSA
Sbjct: 34 MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLAPSKQKSDEAKQEEGSA 89

BLAST of MELO3C016019 vs. TrEMBL
Match: A0A0D2SCE9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G128900 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.4e-17
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 1

Query: 1  MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSVADEVKKDEGSA 57
          MSDSIITKIDEMG+R+NELEQSINDLKAEMGVEGSPSPL PS    DE K++EGSA
Sbjct: 34 MSDSIITKIDEMGNRVNELEQSINDLKAEMGVEGSPSPLAPSNQKLDEAKQEEGSA 89

BLAST of MELO3C016019 vs. TrEMBL
Match: A0A0D2PL78_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G011000 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-16
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1

Query: 1  MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSVADEVKKDEGSA 57
          MSDSIITKID+MG+RINELEQSINDLKAEMGVEG+ SPL PSK  +DE K+DEGSA
Sbjct: 34 MSDSIITKIDDMGNRINELEQSINDLKAEMGVEGTSSPLDPSKQKSDEAKQDEGSA 89

BLAST of MELO3C016019 vs. TrEMBL
Match: A0A0D2TTY6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G011000 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-16
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1

Query: 1   MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSVADEVKKDEGSA 57
           MSDSIITKID+MG+RINELEQSINDLKAEMGVEG+ SPL PSK  +DE K+DEGSA
Sbjct: 48  MSDSIITKIDDMGNRINELEQSINDLKAEMGVEGTSSPLDPSKQKSDEAKQDEGSA 103

BLAST of MELO3C016019 vs. TrEMBL
Match: A0A0D2SXK9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G011000 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-16
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1

Query: 1  MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSVADEVKKDEGSA 57
          MSDSIITKID+MG+RINELEQSINDLKAEMGVEG+ SPL PSK  +DE K+DEGSA
Sbjct: 36 MSDSIITKIDDMGNRINELEQSINDLKAEMGVEGTSSPLDPSKQKSDEAKQDEGSA 91

BLAST of MELO3C016019 vs. TAIR10
Match: AT4G15802.1 (AT4G15802.1 heat shock factor binding protein)

HSP 1 Score: 73.2 bits (178), Expect = 5.9e-14
Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = 1

Query: 1  MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSVADEVKKDEGSA 57
          MSDSIITKID+MG RINELEQSINDL+AEMGVEG+P   PP+    DE K    S+
Sbjct: 34 MSDSIITKIDDMGGRINELEQSINDLRAEMGVEGTP---PPASKSGDEPKTPASSS 86

BLAST of MELO3C016019 vs. NCBI nr
Match: gi|659101430|ref|XP_008451602.1| (PREDICTED: heat shock factor-binding protein 1 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 7.3e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1

Query: 1  MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSVADEVKKDEGSA 57
          MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSVADEVKKDEGSA
Sbjct: 34 MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSVADEVKKDEGSA 89

BLAST of MELO3C016019 vs. NCBI nr
Match: gi|449436519|ref|XP_004136040.1| (PREDICTED: heat shock factor-binding protein 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 2.8e-21
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 1

Query: 1  MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSVADEVKKDEGSA 57
          MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSK VADEVKKDEGSA
Sbjct: 34 MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKPVADEVKKDEGSA 89

BLAST of MELO3C016019 vs. NCBI nr
Match: gi|449436517|ref|XP_004136039.1| (PREDICTED: uncharacterized protein LOC101211644 isoform X1 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 2.8e-21
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 1

Query: 1   MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSVADEVKKDEGSA 57
           MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSK VADEVKKDEGSA
Sbjct: 56  MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKPVADEVKKDEGSA 111

BLAST of MELO3C016019 vs. NCBI nr
Match: gi|590718692|ref|XP_007050869.1| (Heat shock factor binding protein [Theobroma cacao])

HSP 1 Score: 98.2 bits (243), Expect = 4.9e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 1

Query: 1  MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSVADEVKKDEGSA 57
          MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPL PSK  +DE K++EGSA
Sbjct: 34 MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLAPSKQKSDEAKQEEGSA 89

BLAST of MELO3C016019 vs. NCBI nr
Match: gi|1009148584|ref|XP_015892016.1| (PREDICTED: heat shock factor-binding protein 1 [Ziziphus jujuba])

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-17
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 1

Query: 1  MSDSIITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSVADEVKKDEGSA 57
          MSDSI+TKID+MGSRINELEQSINDLKAEMG+EGSPSPL PSKS  DE KK+EGSA
Sbjct: 34 MSDSIVTKIDDMGSRINELEQSINDLKAEMGMEGSPSPLAPSKSNPDESKKEEGSA 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A061DSF3_THECC3.4e-1887.50Heat shock factor binding protein OS=Theobroma cacao GN=TCM_046983 PE=4 SV=1[more]
A0A0D2SCE9_GOSRA6.4e-1782.14Uncharacterized protein OS=Gossypium raimondii GN=B456_007G128900 PE=4 SV=1[more]
A0A0D2PL78_GOSRA1.1e-1682.14Uncharacterized protein OS=Gossypium raimondii GN=B456_008G011000 PE=4 SV=1[more]
A0A0D2TTY6_GOSRA1.1e-1682.14Uncharacterized protein OS=Gossypium raimondii GN=B456_008G011000 PE=4 SV=1[more]
A0A0D2SXK9_GOSRA1.1e-1682.14Uncharacterized protein OS=Gossypium raimondii GN=B456_008G011000 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G15802.15.9e-1467.86 heat shock factor binding protein[more]
Match NameE-valueIdentityDescription
gi|659101430|ref|XP_008451602.1|7.3e-22100.00PREDICTED: heat shock factor-binding protein 1 [Cucumis melo][more]
gi|449436519|ref|XP_004136040.1|2.8e-2198.21PREDICTED: heat shock factor-binding protein 1 isoform X2 [Cucumis sativus][more]
gi|449436517|ref|XP_004136039.1|2.8e-2198.21PREDICTED: uncharacterized protein LOC101211644 isoform X1 [Cucumis sativus][more]
gi|590718692|ref|XP_007050869.1|4.9e-1887.50Heat shock factor binding protein [Theobroma cacao][more]
gi|1009148584|ref|XP_015892016.1|1.4e-1785.71PREDICTED: heat shock factor-binding protein 1 [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009643HS1-bd
IPR009643HS1-bd
IPR009643HS1-bd
Vocabulary: Molecular Function
TermDefinition
GO:0003714transcription corepressor activity
GO:0003714transcription corepressor activity
GO:0003714transcription corepressor activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045892 negative regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003714 transcription corepressor activity
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU45816melon EST collection version 4.0transcribed_cluster
MU61078melon EST collection version 4.0transcribed_cluster
MU64950melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016019T1MELO3C016019T1mRNA
MELO3C016019T2MELO3C016019T2mRNA
MELO3C016019T3MELO3C016019T3mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU45816MU45816transcribed_cluster
MU61078MU61078transcribed_cluster
MU64950MU64950transcribed_cluster


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009643Heat shock factor binding 1PANTHERPTHR19424HEAT SHOCK FACTOR BINDING PROTEIN 1coord: 10..65
score: 5.4
IPR009643Heat shock factor binding 1PFAMPF06825HSBP1coord: 10..45
score: 2.6
NoneNo IPR availableunknownCoilCoilcoord: 24..44
scor
NoneNo IPR availablePANTHERPTHR19424:SF0HEAT SHOCK FACTOR BINDING PROTEIN 1coord: 10..65
score: 5.4