Csa7G396350 (gene) Cucumber (Chinese Long) v2

NameCsa7G396350
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPutative heat shock factor binding protein
LocationChr7 : 15195650 .. 15199144 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTGCATTTTCCCTTCTTAACCTATTTCCATTCAATTACTCTTCTTCACTGTTGAATGTGAATGCCATATGCCATTGCTCTCGTGTTTCCATTTCGCATAGCTTAGATTTGAAACTTTTGAAACAACTTACTCTTCTTTCTTCAATTTCTGCTTTGAATTTTTATTCCTGTGGTTTTTTAATAATTCTGTTTCAGCTTTACTTGCTCAATCGTCTTGTAACTTTTTGCTCACTTTGAACAATGCCTCATTAGATCACTTTAGGTTTTAGGCACTAAGACTTTGGTTTGTGGCTCGGTTACTCGTGACTGTATTGTGGGGTTCGTTGTTTCTATTGATGTCTGTAAGATTCATCTTCTTGGTCGTGTGGTTACATGTGGAGATTTCAAATTTTCTGATTTTTTTTAAAAAATTATTTATTTGGTTGATGTTGAATGCCATGTGATATGGTGTTGTTTTTTTGCTCAGTGGCTTAAATGAATCCCTCATTACTAAGGAAGTTACTGGAGATTTAGCATTTTTATAAGATAGAAGAGGTTATTTTTAAGATTGATTTTTAAAACTTTTACGAGTTGATTGGGTGTTCTTTATGGTACGGGTTTGTGTAAGGAGGGTTTTGGGTTTAAATTGAGATCTTTGATTTGGTCAATTGTCTCTGGTTGATACACTTCTGTACTTGGATTAATGGAATGGGTATAAGTAAAACATTTGCCGCTAGTGGTTTAGGTGCCAGCGTTCTTTTTCCTGGTGGAGGTTGCTTTATAGGTTGGTGTTTAGAGGGGTAGATGGGGACTTAGTTGAAGATTTTCACGTGAGAAAGAATAGAGGTCAACTCACCCGTGTTTTGTTTGTAGATGATAGATGGTACTGTTCTTGTTAACTTGAACCAAGTCCTGCATATATTTGATGTCAATATTTGGCATAGAGGTGTCTCGGAGAAGTTTTTTTTCTGGAGTTGTTTGTTACGCTTCTACGTTTGTTAGGCTTAGGTAGGCTAGGTTGGTGGTGTTTAAATTTTCTTATTTGCTGTACCGCTACTTGGATTTTTTGATGAGTTCACGATCCTCATTCTTTTTTGGCTTTGTTGTGGGAAAGGTCGAAATGGTTTTATTATATTTAAAAATGTTAATTTTGTACAAGAAACCTTTATTTTCTGAAGTAGGGAGGTTAAATTTCGTTCAATATGTTTTTGTTTTAGATCCTGCTCTACTTCCTATCCTATCCTAGTTTAGAATTGATTCTTTCATCAGTAAGAAGGTGGAGAAATGGATTTTTTATGGAAGGGTTAGGGGGACTGGGTTGGTGTGTTAGGTACTTAATAACCTTGGAGAACCACACCCCAAAAGCCAGCTATTGGAGTGGGAGAGCCAAGCAACTTAAGAACCACATTGGTGCTTTGATAATCAATGTTTGCTTGTGGATCCTCATCCTCTCTTTTTCATATGATTGTTCTTTTCCTTTTATCAAATCCCTTGCTTTTCTCATGGGAGGATTAGCACCATTGACTATATCCAAAGATCGTCTTCTGTCCTTCTAGGCCCTTATGGTGCAAAGTGCAGATCATTTTCTTAGGAGTTTTTAGTTTTTGGAAGCACTTTGGGACACATTTGTGGAGGTTTTTGGTGTCCAAGTGACCTGTAGCAGTTAGAATAAGGCTGTGATGGAGTAGATCACTAGGTCTTATACCACCCTCTCTTCTGAAATTGAGAGATGGCTCTTTAGCATGTTGCTTTCTTTGTGATCTTATGAAATATCTAGCATCAAAGAACTAGTAGGATAGTTAGGCATGGAGACTTTTTGGGAGGAAATTTGGACCTTGTTTAGGTTTGCGGTTTGCCTCTCTTTAGGTCTTGGTTATGAAGGATTTTTGAGATTATGCTTTATCTCATTTTTTTTTGTAGTTATTAGCATTTTTTGTATCCCTTGTATATTCTTTTAGTTGTGGCTGTGGCTGATTTCTTTTGGGAGAATAAAGGACATTTGATTTCCAGTGGCCAAGATATCAGTTTTCAAGGTTGTTTTAATTACTATTTATCTTCGGAGTGCTACTGATTTCTGTTCCCTCGACAGTTTTACAACTGCCGATCTCATTGTTAAATGTAACTGTCACAACTGAAGATGTTTGCTGCTTGGTCTTAATTCTTTTTCAAGATTGTCACCCTCCACCTCCAGTGATTCTTATTTGTTTGGCTTATTATTATTGTTCGTGTAATTTGGCTGGTTTGTTTCATTGTATGAGATTGTGAAATGCACATGTTACTTTTTTATCTCGCAGGATGGGCATGACTCTGAAGATGCAAAGCAAAGCACAGCTGACATGACCATTTTTGTGAGTTCATTTTCTTTCCTTTCAGTTCTTTCTTTTTGTTCTTCCCCATTTGATTGTCAACCTAACTTATTGGAAGGTTGGTTCTATGAAATCTATCATTTTCCTTATGACAATACTCTTGTTCTGTCTAAAATTCAACCCTTAAGGCACTTTAATTGTTTTATGATGTTTTATCTTTAAATTGGTGCTAACCTTTTTTTTTTCTCTCTCTCCAGGTGCAAAATCTTCTTCAACAAATGGTGAGTTTTAGTTATTGTAAGTTTCTGTCAGAGAAATTTATGTCTAACAAAATATTTTTTATGCAGCAATCTAGGTTCCAAACCATGTCCGACTCCATTATCACAAAGAATATCCTTTCGAAATACTTATATTTACTTTTAGCGTTTCCCTAAAGTTGTAGTTATCATGAGTAATTGTTTCTGATAGACTTGCATACATTTTGAGTTTTAAGTTCTGCAAAATAGGTCGTTTAGTTATTTATTTGTTAATATTGGCTAGATAGTGCAATTTTCTGATTATTATCATTTTTCTTATCACTCTATCTAACAATGATCTAGTAAAAGTTGCATATAATTGAAATATTCTTATAGGGAAACAATAGTAATGATTTTGAAATGGATTGATTGAATATTTATGAACCTTAATTCCCTCTAATGAGATATTTGAATCCATTACAATCTGAGATCCTCTATATAATTCACCTTGACTGCTAATTAGAATGTTTTGACTTTCTAATACAACTTTGGGTTTCAGATACATTGGAAGAGAAGTAGATTGTAGGATAGCTTTGTTGTAATAAGTTAACTTATAGTAAATAAGCTTTCTTTAACTTGAATATACTCGATGAGATGGGGAGCCGCATAAATGAATTGGAGCAGAGCATCAATGACCTAAAGGCCGAGATGGGTGTCGAGGGCTCTCCGTCGCCACTACCTCCATCAAAACCAGTTGCAGATGAAGTGAAGAAAGATGAAGGTTCTGCCTAGAAATAGTTGAGATTGTTCACTTTATTGATGAGTTTGTTGCAATATTCTCTTTTTGCTATTGCCTTTGTGAAGTTGAAACCAATGCTTAGAATGAAACAGAAAAGAGCAAAATATGATATAGACTTGGACTTGCTGTTTCTGCATGATTTCTTATTGATAATATAGTGATGATTATACT

mRNA sequence

ATGGATGGGCATGACTCTGAAGATGCAAAGCAAAGCACAGCTGACATGACCATTTTTGTGCAAAATCTTCTTCAACAAATGAGCATCAATGACCTAAAGGCCGAGATGGGTGTCGAGGGCTCTCCGTCGCCACTACCTCCATCAAAACCAGTTGCAGATGAAGTGAAGAAAGATGAAGGTTCTGCCTAG

Coding sequence (CDS)

ATGGATGGGCATGACTCTGAAGATGCAAAGCAAAGCACAGCTGACATGACCATTTTTGTGCAAAATCTTCTTCAACAAATGAGCATCAATGACCTAAAGGCCGAGATGGGTGTCGAGGGCTCTCCGTCGCCACTACCTCCATCAAAACCAGTTGCAGATGAAGTGAAGAAAGATGAAGGTTCTGCCTAG

Protein sequence

MDGHDSEDAKQSTADMTIFVQNLLQQMSINDLKAEMGVEGSPSPLPPSKPVADEVKKDEGSA*
BLAST of Csa7G396350 vs. TrEMBL
Match: A0A0A0K7R0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G396350 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.7e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1

Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMSINDLKAEMGVEGSPSPLPPSKPVADEVKKDEG 60
          MDGHDSEDAKQSTADMTIFVQNLLQQMSINDLKAEMGVEGSPSPLPPSKPVADEVKKDEG
Sbjct: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMSINDLKAEMGVEGSPSPLPPSKPVADEVKKDEG 60

Query: 61 SA 63
          SA
Sbjct: 61 SA 62

BLAST of Csa7G396350 vs. TrEMBL
Match: A0A061DSF3_THECC (Heat shock factor binding protein OS=Theobroma cacao GN=TCM_046983 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.3e-17
Identity = 52/89 (58.43%), Postives = 58/89 (65.17%), Query Frame = 1

Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQM---------------------------SINDLK 60
          MDGH+SED+KQSTADMT+FVQNLLQQM                           SINDLK
Sbjct: 1  MDGHNSEDSKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLK 60

Query: 61 AEMGVEGSPSPLPPSKPVADEVKKDEGSA 63
          AEMGVEGSPSPL PSK  +DE K++EGSA
Sbjct: 61 AEMGVEGSPSPLAPSKQKSDEAKQEEGSA 89

BLAST of Csa7G396350 vs. TrEMBL
Match: A0A0B0P429_GOSAR (Heat shock factor-binding 1 OS=Gossypium arboreum GN=F383_25423 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.6e-16
Identity = 49/77 (63.64%), Postives = 56/77 (72.73%), Query Frame = 1

Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQM---------------SINDLKAEMGVEGSPSPL 60
          MDG +S+D+KQSTADMT+FVQNLLQQM               SINDLKAEMGVEG+ SPL
Sbjct: 1  MDGQNSDDSKQSTADMTVFVQNLLQQMVTLDDMGNRINELEQSINDLKAEMGVEGTSSPL 60

Query: 61 PPSKPVADEVKKDEGSA 63
           PSK  +DE K+DEGSA
Sbjct: 61 DPSKQKSDEAKQDEGSA 77

BLAST of Csa7G396350 vs. TrEMBL
Match: A0A0B0NRD0_GOSAR (Hsbp1 OS=Gossypium arboreum GN=F383_17180 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.0e-15
Identity = 50/91 (54.95%), Postives = 56/91 (61.54%), Query Frame = 1

Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQM-----------------------------SIND 60
          MDGH SED+KQSTADMT+FVQ+LLQQM                             SIND
Sbjct: 1  MDGHSSEDSKQSTADMTVFVQSLLQQMYYCELWDIYFLLNSKALDEMGNRVNELEQSIND 60

Query: 61 LKAEMGVEGSPSPLPPSKPVADEVKKDEGSA 63
          LKAEMGVEGSPSPL PS   +DE K++EGSA
Sbjct: 61 LKAEMGVEGSPSPLAPSNQKSDEAKQEEGSA 91

BLAST of Csa7G396350 vs. TrEMBL
Match: V4TVF9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023083mg PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.0e-15
Identity = 51/89 (57.30%), Postives = 55/89 (61.80%), Query Frame = 1

Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQM---------------------------SINDLK 60
          MDGHDSED KQSTADMT+FVQNLLQQM                           SINDL+
Sbjct: 1  MDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 60

Query: 61 AEMGVEGSPSPLPPSKPVADEVKKDEGSA 63
          AEMGVEGSPSPL PSK  + E K +EGSA
Sbjct: 61 AEMGVEGSPSPLTPSKTNSGEGKPEEGSA 89

BLAST of Csa7G396350 vs. TAIR10
Match: AT4G15802.1 (AT4G15802.1 heat shock factor binding protein)

HSP 1 Score: 71.2 bits (173), Expect = 2.5e-13
Identity = 44/89 (49.44%), Postives = 46/89 (51.69%), Query Frame = 1

Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQM---------------------------SINDLK 60
          MDGHDSED KQSTADMT FVQNLLQQM                           SINDL+
Sbjct: 1  MDGHDSEDTKQSTADMTAFVQNLLQQMQTRFQTMSDSIITKIDDMGGRINELEQSINDLR 60

Query: 61 AEMGVEGSPSPLPPSKPVADEVKKDEGSA 63
          AEMGVEG+P   PP+    DE K    S+
Sbjct: 61 AEMGVEGTP---PPASKSGDEPKTPASSS 86

BLAST of Csa7G396350 vs. NCBI nr
Match: gi|700189686|gb|KGN44919.1| (hypothetical protein Csa_7G396350 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 2.4e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1

Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMSINDLKAEMGVEGSPSPLPPSKPVADEVKKDEG 60
          MDGHDSEDAKQSTADMTIFVQNLLQQMSINDLKAEMGVEGSPSPLPPSKPVADEVKKDEG
Sbjct: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMSINDLKAEMGVEGSPSPLPPSKPVADEVKKDEG 60

Query: 61 SA 63
          SA
Sbjct: 61 SA 62

BLAST of Csa7G396350 vs. NCBI nr
Match: gi|449436519|ref|XP_004136040.1| (PREDICTED: heat shock factor-binding protein 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 6.2e-22
Identity = 62/89 (69.66%), Postives = 62/89 (69.66%), Query Frame = 1

Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQM---------------------------SINDLK 60
          MDGHDSEDAKQSTADMTIFVQNLLQQM                           SINDLK
Sbjct: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLK 60

Query: 61 AEMGVEGSPSPLPPSKPVADEVKKDEGSA 63
          AEMGVEGSPSPLPPSKPVADEVKKDEGSA
Sbjct: 61 AEMGVEGSPSPLPPSKPVADEVKKDEGSA 89

BLAST of Csa7G396350 vs. NCBI nr
Match: gi|659101430|ref|XP_008451602.1| (PREDICTED: heat shock factor-binding protein 1 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 5.2e-21
Identity = 61/89 (68.54%), Postives = 61/89 (68.54%), Query Frame = 1

Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQM---------------------------SINDLK 60
          MDGHDSEDAKQSTADMTIFVQNLLQQM                           SINDLK
Sbjct: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLK 60

Query: 61 AEMGVEGSPSPLPPSKPVADEVKKDEGSA 63
          AEMGVEGSPSPLPPSK VADEVKKDEGSA
Sbjct: 61 AEMGVEGSPSPLPPSKSVADEVKKDEGSA 89

BLAST of Csa7G396350 vs. NCBI nr
Match: gi|657988926|ref|XP_008386647.1| (PREDICTED: heat shock factor-binding protein 1-like [Malus domestica])

HSP 1 Score: 94.7 bits (234), Expect = 6.0e-17
Identity = 53/89 (59.55%), Postives = 57/89 (64.04%), Query Frame = 1

Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQM---------------------------SINDLK 60
          MDGHDSED KQSTADM+ FVQNLLQQM                           SINDLK
Sbjct: 1  MDGHDSEDPKQSTADMSAFVQNLLQQMQSRFQTMSDSIVTKIDEMGSRINELESSINDLK 60

Query: 61 AEMGVEGSPSPLPPSKPVADEVKKDEGSA 63
           EMG+EGSPSP+  SKPVADEVK+DEGSA
Sbjct: 61 TEMGMEGSPSPMQQSKPVADEVKQDEGSA 89

BLAST of Csa7G396350 vs. NCBI nr
Match: gi|590718692|ref|XP_007050869.1| (Heat shock factor binding protein [Theobroma cacao])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-16
Identity = 52/89 (58.43%), Postives = 58/89 (65.17%), Query Frame = 1

Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQM---------------------------SINDLK 60
          MDGH+SED+KQSTADMT+FVQNLLQQM                           SINDLK
Sbjct: 1  MDGHNSEDSKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLK 60

Query: 61 AEMGVEGSPSPLPPSKPVADEVKKDEGSA 63
          AEMGVEGSPSPL PSK  +DE K++EGSA
Sbjct: 61 AEMGVEGSPSPLAPSKQKSDEAKQEEGSA 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K7R0_CUCSA1.7e-26100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G396350 PE=4 SV=1[more]
A0A061DSF3_THECC9.3e-1758.43Heat shock factor binding protein OS=Theobroma cacao GN=TCM_046983 PE=4 SV=1[more]
A0A0B0P429_GOSAR4.6e-1663.64Heat shock factor-binding 1 OS=Gossypium arboreum GN=F383_25423 PE=4 SV=1[more]
A0A0B0NRD0_GOSAR3.0e-1554.95Hsbp1 OS=Gossypium arboreum GN=F383_17180 PE=4 SV=1[more]
V4TVF9_9ROSI3.0e-1557.30Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023083mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G15802.12.5e-1349.44 heat shock factor binding protein[more]
Match NameE-valueIdentityDescription
gi|700189686|gb|KGN44919.1|2.4e-26100.00hypothetical protein Csa_7G396350 [Cucumis sativus][more]
gi|449436519|ref|XP_004136040.1|6.2e-2269.66PREDICTED: heat shock factor-binding protein 1 isoform X2 [Cucumis sativus][more]
gi|659101430|ref|XP_008451602.1|5.2e-2168.54PREDICTED: heat shock factor-binding protein 1 [Cucumis melo][more]
gi|657988926|ref|XP_008386647.1|6.0e-1759.55PREDICTED: heat shock factor-binding protein 1-like [Malus domestica][more]
gi|590718692|ref|XP_007050869.1|1.3e-1658.43Heat shock factor binding protein [Theobroma cacao][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009643HS1-bd
Vocabulary: Molecular Function
TermDefinition
GO:0003714transcription corepressor activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003714 transcription corepressor activity
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU108160cucumber EST collection version 3.0transcribed_cluster
CU123076cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G396350.1Csa7G396350.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU123076CU123076transcribed_cluster
CU108160CU108160transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009643Heat shock factor binding 1PANTHERPTHR19424HEAT SHOCK FACTOR BINDING PROTEIN 1coord: 1..56
score: 7.5
NoneNo IPR availablePANTHERPTHR19424:SF0HEAT SHOCK FACTOR BINDING PROTEIN 1coord: 1..56
score: 7.5