Cp4.1LG12g02300 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g02300
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRibosomal protein L34e superfamily protein
LocationCp4.1LG12 : 1513989 .. 1517928 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAGATCCCTTATTTTTCCCAAACTGTGAACTCCATTATTGCGAAGCTCTCATTGGGCTCTCTCTATAACATGCGCAATCTTCTGGTTCCGACCACCGCCATGCCTCCGTCCTCGATTCTCTCCTCATCGTCGTCAATTCCCAAATCCAAGACTTCTGCAAACCCTAACCCTAGCAATTCTCTTCTCTGTAAACATTCGCCATCGGCAACCCTTGACCTTCTTATTCTCATTCTTGTTCTCTTTTCTGGTACCTTTCTTGTAACGTCATATTTCTCCTACATTTTCAACTCTCTGTCGATTCTCTTATCGCATTCAGCCCCGCAGCTTCCTCAATTTCCGTTTCCGTTTCCGTTTATTGCTGGGTTTTTGTTGTTCTTCTGTGTAACTATTGGCGTGTTTGAGATATGTTGTGGCGCCAGATCGAGGAAATGCGCGAAGCCGGGATGTAAAGGGTTGAAAAAAGCTATGGAGTTTGATCTGCAATTGCAAACGGAGGAGTGTGTGAAGAATGGGTCGAAGGAGATAGATAAATTGCCGTGGAAAGGTGGTAATGTGGCCAATCCGGATTATGAGTGCTTGAGGTCCGAGCTGAGGAAGATGGCACCACCCAATGGCCGAGCTGTTCTGCTCTTCCGGGCGCGCTGTGGCTGCCCCATCGCGAAGCTTGAAGGCTGGGGGACTAAGCGCGGGCGGCGGCATAAGAAGTAAGTTCATTATTTATCCGATACAGTGCCCATGAATCTTTTTTGGGGATTGTTTTTGTTTGCTCTGATCATTCAAAGGCTTGATCTCTTCCGCTCTTGTTTTGTAATTCTAGAATTGGGTCTGTTCTGCTGAAATTATCACGACCTCCTTCTCCCTTGCAAAACCCCAAAACTGAAAACAAAATGATGAAGGAAAATGGTGTATCTGAATTTAGATAGCATTTATTGATGTCCCTGTGACATACATGAAACTCTGGACGAACCTTAGTATTCAACTCATTTTGAAACTGGGATGAAATTTCTTCCCCTGTCTAGTATTTCAGTTAAGATTATGGAAGAGGAAGACTATCTTATTTCAGTTTGGTGAATCAAAATCTATTATACATCTTCCTTTTATACGTTGATTTTTCAACAAGAAAAAATGTCGATCAGATCAATTCCCATTGACACAGGTATCAGGATTTTTAAGTATTGCAGAGTCCCTCATAGTGATGCTCATAAATTCAAGTTCTGGACTGAATTGTTAAATGAAAACTAATTCTGTAGCTAACCTTGCATCCTGGACTCATAGTTGCAGAGTCCCTCATAGTCTTTACTTGCCCTGTTTTGTTTCTGAGCTCATATTTAAATTCATACCGTTCTCGGTCGGTATAGTACTATCTTCTGTTTCTTCCCCCTTTTTGACATCTATTGAGGATGGTGAAATTCAATTTATGTAAACTTACTTTCAAACTTGTTCTTCCTGGTGCAAATATTATTTTTAGGGAGATAGCTTCTTGTTTCATGTTTTGATCTAGAGAAGATGTTTAGTCGTTTTTTCCCCCATTTGATGCAAGTTCTCTTCACTCTTGGGTCCATTCTTCAAAGTTGGTTAATTATTTTTCAGTGGGAAGCTATGCAAGCAAGTTTCAGGGACTCGGTTAGCATACCCCAAGTAATTTGTTTCTGGTTAGCAATTATTGGACTAGGTTGAAGCATTGATGTTCTGTTCTCCTAGCTTCTAACTAAATTTTATGTATGCATGGTGTTTAGCTCTAGTTGATGTTTTATTTACTTAACCTTGCGAGCTTTACCCGATTTCTTTTTCAGTCATGATTTACCTAATAGACCATATCTAATTGTTTTAATGAACCCTGGCATTGGTATATGATGCATTCTGGAACATTATCATAGCTAAAAAAACCCAAGAAAACAGCCTAGGAGCGGGCTGGGCAGAGAAAACTCCTTCTCGAAAGGACCATAAAAGAAGAGGCTTCTTGTAACCGCCCAAGCCCACCGCTAGCCGATATTGTCCTCTTTGGGCTTTCCCTTTCAGGCTTCCCCTCAAGGTTTTTAAAACGTGTTTGCTAGGAGAGGTTTCTACACTCTTATAAAGAATGTTCCGTTCTCCTCCCCAACCGATGTAGGATCTCACACTTCCAATTGCAAAAAAAATCTATGGAGAGGCTCGAATTACAACAGAATTTTTTGTGAGAGCACCACCATGAGGAGGTTTGCTGTACATTACCGCACAAATATCTTAACAAAACCTTTTTCCTTCAAATCTCTTTGGTTTCTTTCCTACCACACAATTCCACAAAACTTTAGTGTTGACTTTAAACCTCACCTTTCCAGGACTTCCAAAAGCTAATCACTTTATTAGGAAGTAGGAACACGTTTGGATTATTCTTGATCTACACAATGATGCTATAGCTTTATTTTGCTTCGACAAAAACCACACGAATTTATTTGTGTCGATATGTTGCCAAATAATCAACCTCTTGACACAAAACAACTTGAACCAGACTCATTGGTTATTATGAACCTGTTCAACATGAGTGAGATTCATCAGAGGTTTTTCAATAAAAAAGATATACCCAATACTTGGTTAGCTTTTTTACTCTATGAAAATGCTTAACAAGTCAAGTCTTGTCACGTAGTGTTTCAGCAATTTTATCGATGTTCTTCTATATATGCATGTAGCCTTTCTTTCCTGGGAAGCTAATTATGATCATCTAGTTGTGTGGCTAGCTTCATCCTATTTTACTTCACTGGTTTCAGTTTCACAAAAGATGTGGAAGCATGAAAACTGTAATATAACTTGCAGGATCTATGGATTGGTAATTTTGTCCTAATTTCCTGTTTTACCCCATGTGGGAAAATGGAATGGGAACCCAATGCGTAACGACCCAAGCCCACCGCTAGTAGATATTGCCTTTTTTGGTCTGTCCCTCAAAGTTTTTAAAACGCGTCTGCTAGGGAGAGGTTNTATAGAATTATTAATTTATTTGCCAGAAACTCAACAGTCATTTAAACATAATTTCATCAACTTTACCGGAAAAACAAATTAATTAATTATATATATTAAAAATATATTGTGTTTCTTCCCTATTCTCAGCCACTCTCCTCCGTGGCGCGTGTTAAATACTCAATCAGACGGCCCACAATCTCCGGTCCGTCACCACCACTTCGCTAATGTGCGCCATTCTTCATCATCATCTTCTTCTTCTTCTTCTTCAATCTTCCTCTCTCTCTCAAATCCCCTTTTTACAGTCAGATCCCTTATTTTTCCCAAACTGTGAACTCCATTATTGCGAAGCTCTCATTGGGCTCTCTCTATAACATGCGCAATCTTCTGGTTCCGACCACCGCCATGCCTCCGTCCTCGATTCTCTCCTCATCGTCGTCAATTCCCAAATCCAAGACTTCTGCAAACCCTAACCCTAGCAATTCTCTTCTCTGTAAACATTCGCCATCGGCAACCCTTGACCTTCTTATTCTCATTCTTGTTCTCTTTTCTGGTACCTTTCTTGTAACGTCATATTTCTCCTACATTTTCAACTCTCTGTCGATTCTCTTATCGCATTCAGCCCCGCAGCTTCCTCAATTTCCGTTTCCGTTTCCGTTTATTGCTGGGTTTTTGTTGTTCTTCTGTGTAACTATTGGCGTGTTTGAGATATGTTGTGGCGCCAGATCGAGGAAATGCGCGAAGCCGGGATGTAAAGGGTTGAAAAAAGCTATGGAGTTTGATCTGCAATTGCAAACGGAGGAGTGTGTGAAGAATGGGTCGAAGGAGATAGATAAATTGCCGTGGAAAGGTGGTAATGTGGCCAATCCGGATTATGAGTGCTTGAGGTCCGAGCTGAGGAAGATGGCACCACCCAATGGCCGAGCTGTTCTGCTCTTCCGGGCGCGCTGTGGCTGCCCCATCGCGAAGCTTGAAGGCTGGGGGACTAAGCGCGGGCGGCGGCATAAG

mRNA sequence

TCAGATCCCTTATTTTTCCCAAACTGTGAACTCCATTATTGCGAAGCTCTCATTGGGCTCTCTCTATAACATGCGCAATCTTCTGGTTCCGACCACCGCCATGCCTCCGTCCTCGATTCTCTCCTCATCGTCGTCAATTCCCAAATCCAAGACTTCTGCAAACCCTAACCCTAGCAATTCTCTTCTCTGTAAACATTCGCCATCGGCAACCCTTGACCTTCTTATTCTCATTCTTGTTCTCTTTTCTGGTACCTTTCTTGTAACGTCATATTTCTCCTACATTTTCAACTCTCTGTCGATTCTCTTATCGCATTCAGCCCCGCAGCTTCCTCAATTTCCGTTTCCGTTTCCGTTTATTGCTGGGTTTTTGTTGTTCTTCTGTGTAACTATTGGCGTGTTTGAGATATGTTGTGGCGCCAGATCGAGGAAATGCGCGAAGCCGGGATGTAAAGGGTTGAAAAAAGCTATGGAGTTTGATCTGCAATTGCAAACGGAGGAGTGTGTGAAGAATGGGTCGAAGGAGATAGATAAATTGCCGTGGAAAGGTGGTAATGTGGCCAATCCGGATTATGAGTGCTTGAGGTCCGAGCTGAGGAAGATGGCACCACCCAATGGCCGAGCTGTTCTGCTCTTCCGGGCGCGCTGTGGCTGCCCCATCGCGAAGCTTGAAGGCTGGGGGACTAAGCGCGGGCGGCGGCATAAGAATGGGAAGCTATGCAAGCAAGTTTCAGGGACTCGGTTAGCATACCCCAACCACTCTCCTCCGTGGCGCGTGTTAAATACTCAATCAGACGGCCCACAATCTCCGGTCCGTCACCACCACTTCGCTAATATCCCTTATTTTTCCCAAACTGTGAACTCCATTATTGCGAAGCTCTCATTGGGCTCTCTCTATAACATGCGCAATCTTCTGGTTCCGACCACCGCCATGCCTCCGTCCTCGATTCTCTCCTCATCGTCGTCAATTCCCAAATCCAAGACTTCTGCAAACCCTAACCCTAGCAATTCTCTTCTCTGTAAACATTCGCCATCGGCAACCCTTGACCTTCTTATTCTCATTCTTGTTCTCTTTTCTGGTACCTTTCTTGTAACGTCATATTTCTCCTACATTTTCAACTCTCTGTCGATTCTCTTATCGCATTCAGCCCCGCAGCTTCCTCAATTTCCGTTTCCGTTTCCGTTTATTGCTGGGTTTTTGTTGTTCTTCTGTGTAACTATTGGCGTGTTTGAGATATGTTGTGGCGCCAGATCGAGGAAATGCGCGAAGCCGGGATGTAAAGGGTTGAAAAAAGCTATGGAGTTTGATCTGCAATTGCAAACGGAGGAGTGTGTGAAGAATGGGTCGAAGGAGATAGATAAATTGCCGTGGAAAGGTGGTAATGTGGCCAATCCGGATTATGAGTGCTTGAGGTCCGAGCTGAGGAAGATGGCACCACCCAATGGCCGAGCTGTTCTGCTCTTCCGGGCGCGCTGTGGCTGCCCCATCGCGAAGCTTGAAGGCTGGGGGACTAAGCGCGGGCGGCGGCATAAG

Coding sequence (CDS)

ATGCGCAATCTTCTGGTTCCGACCACCGCCATGCCTCCGTCCTCGATTCTCTCCTCATCGTCGTCAATTCCCAAATCCAAGACTTCTGCAAACCCTAACCCTAGCAATTCTCTTCTCTGTAAACATTCGCCATCGGCAACCCTTGACCTTCTTATTCTCATTCTTGTTCTCTTTTCTGGTACCTTTCTTGTAACGTCATATTTCTCCTACATTTTCAACTCTCTGTCGATTCTCTTATCGCATTCAGCCCCGCAGCTTCCTCAATTTCCGTTTCCGTTTCCGTTTATTGCTGGGTTTTTGTTGTTCTTCTGTGTAACTATTGGCGTGTTTGAGATATGTTGTGGCGCCAGATCGAGGAAATGCGCGAAGCCGGGATGTAAAGGGTTGAAAAAAGCTATGGAGTTTGATCTGCAATTGCAAACGGAGGAGTGTGTGAAGAATGGGTCGAAGGAGATAGATAAATTGCCGTGGAAAGGTGGTAATGTGGCCAATCCGGATTATGAGTGCTTGAGGTCCGAGCTGAGGAAGATGGCACCACCCAATGGCCGAGCTGTTCTGCTCTTCCGGGCGCGCTGTGGCTGCCCCATCGCGAAGCTTGAAGGCTGGGGGACTAAGCGCGGGCGGCGGCATAAGAATGGGAAGCTATGCAAGCAAGTTTCAGGGACTCGGTTAGCATACCCCAACCACTCTCCTCCGTGGCGCGTGTTAAATACTCAATCAGACGGCCCACAATCTCCGGTCCGTCACCACCACTTCGCTAATATCCCTTATTTTTCCCAAACTGTGAACTCCATTATTGCGAAGCTCTCATTGGGCTCTCTCTATAACATGCGCAATCTTCTGGTTCCGACCACCGCCATGCCTCCGTCCTCGATTCTCTCCTCATCGTCGTCAATTCCCAAATCCAAGACTTCTGCAAACCCTAACCCTAGCAATTCTCTTCTCTGTAAACATTCGCCATCGGCAACCCTTGACCTTCTTATTCTCATTCTTGTTCTCTTTTCTGGTACCTTTCTTGTAACGTCATATTTCTCCTACATTTTCAACTCTCTGTCGATTCTCTTATCGCATTCAGCCCCGCAGCTTCCTCAATTTCCGTTTCCGTTTCCGTTTATTGCTGGGTTTTTGTTGTTCTTCTGTGTAACTATTGGCGTGTTTGAGATATGTTGTGGCGCCAGATCGAGGAAATGCGCGAAGCCGGGATGTAAAGGGTTGAAAAAAGCTATGGAGTTTGATCTGCAATTGCAAACGGAGGAGTGTGTGAAGAATGGGTCGAAGGAGATAGATAAATTGCCGTGGAAAGGTGGTAATGTGGCCAATCCGGATTATGAGTGCTTGAGGTCCGAGCTGAGGAAGATGGCACCACCCAATGGCCGAGCTGTTCTGCTCTTCCGGGCGCGCTGTGGCTGCCCCATCGCGAAGCTTGAAGGCTGGGGGACTAAGCGCGGGCGGCGGCATAAG

Protein sequence

MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSGTFLVTSYFSYIFNSLSILLSHSAPQLPQFPFPFPFIAGFLLFFCVTIGVFEICCGARSRKCAKPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPPNGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGTRLAYPNHSPPWRVLNTQSDGPQSPVRHHHFANIPYFSQTVNSIIAKLSLGSLYNMRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSGTFLVTSYFSYIFNSLSILLSHSAPQLPQFPFPFPFIAGFLLFFCVTIGVFEICCGARSRKCAKPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPPNGRAVLLFRARCGCPIAKLEGWGTKRGRRHK
Homology
[Close]
BLAST of Cp4.1LG12g02300 vs. Swiss-Prot
Match: Y5902_ARATH (Uncharacterized protein At5g19025 OS=Arabidopsis thaliana GN=At5g19025 PE=2 SV=3)

HSP 1 Score: 238.4 bits (607), Expect = 1.6e-61
Identity = 133/239 (55.65%), Postives = 161/239 (67.36%), Query Frame = 1 

Query: 18  SSSSSIPKSKTSANPNPSNSL-LCKHSPSATLDLLILILVLFSGTFLVTSYFSYIFNSLS 77
           +S++  P S+++AN N S+SL LCKHSPSATLDLLILILVLFSGTFL++SYFSY+ +SLS
Sbjct: 20  NSTTMPPSSRSAANQNSSSSLHLCKHSPSATLDLLILILVLFSGTFLLSSYFSYLIHSLS 79

Query: 78  ILLSHSAPQLPQFPFPF-PFIAGFLLFFC------------------------------- 137
           +L SH     P         +   ++FF                                
Sbjct: 80  LLSSH----FPSITISLSSLLPPLIIFFSSDHSTEDEDHHHPSGKIPPPASFFFAFAVFF 139

Query: 138 -VTIGVFEICCGARSRKCAKPGCKGLKKAMEFDLQLQTEECVKNGS-KEIDKLPWKGGNV 197
             +I   ++CCG+RSRKC  P CKG+KKAMEFDLQLQTEECVK+GS KEID+LPWKGG+ 
Sbjct: 140 AASIAFLDLCCGSRSRKCRNPKCKGMKKAMEFDLQLQTEECVKSGSVKEIDRLPWKGGSE 199

Query: 198 ANPDYECLRSELRKMAPPNGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSG 222
           +NPDYECLR+ELRKMAP NGRAVL+FR++CGCPIAKLEGWG KR RRHK       V G
Sbjct: 200 SNPDYECLRAELRKMAPVNGRAVLIFRSKCGCPIAKLEGWGPKRSRRHKKSPAKLAVKG 254

[Close]
BLAST of Cp4.1LG12g02300 vs. TrEMBL
Match: A0A0A0KEK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G238650 PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 1.6e-116
Identity = 217/227 (95.59%), Postives = 220/227 (96.92%), Query Frame = 1 

Query: 1   MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSG 60
           MRNLLVPTTAMPPSSILSSSSSI KSKTS NP+PSNSLLCKHSPSATLDLLILILVLFSG
Sbjct: 1   MRNLLVPTTAMPPSSILSSSSSISKSKTSTNPSPSNSLLCKHSPSATLDLLILILVLFSG 60

Query: 61  TFLVTSYFSYIFNSLSILLSHSAPQLPQFPFPFPFIAGFLLFFCVTIGVFEICCGARSRK 120
           TFLVTSYFSYIFNSLSILLSHSAPQLPQ  FPF FIAGFLLFFCVTIGVFEICCGARSRK
Sbjct: 61  TFLVTSYFSYIFNSLSILLSHSAPQLPQ--FPFTFIAGFLLFFCVTIGVFEICCGARSRK 120

Query: 121 CAKPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPP 180
           CAKPGCKGLKKAMEFDLQLQTEECVK+GSKEIDKLPWKGG+ ANPDYECLRSELRKMAPP
Sbjct: 121 CAKPGCKGLKKAMEFDLQLQTEECVKSGSKEIDKLPWKGGSEANPDYECLRSELRKMAPP 180

Query: 181 NGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGTRLAYP 228
           NGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSG RLAYP
Sbjct: 181 NGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGARLAYP 225

[Close]
BLAST of Cp4.1LG12g02300 vs. TrEMBL
Match: M5Y586_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011602mg PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 3.5e-79
Identity = 153/205 (74.63%), Postives = 170/205 (82.93%), Query Frame = 1 

Query: 287 MPPSSILSSSSSIPKSKTSANPNPSNS----LLCKHSPSATLDLLILILVLFSGTFLVTS 346
           MP S+  +SSSS      S+NPNP+ +    LLCKHSPSATLDLLILILVLFSGTFL+TS
Sbjct: 1   MPSSAAATSSSSPTPKPKSSNPNPNGNPNCTLLCKHSPSATLDLLILILVLFSGTFLITS 60

Query: 347 YFSYIFNSLSILLSHSAPQLPQFPFPFPFIAGFLLFFCVTIGVFEICCGARSRKCAKPGC 406
           YFSYIFNSLS+LLSHS+  L   P P+  + GF+ FF V + + E CCG RSRKC +PGC
Sbjct: 61  YFSYIFNSLSLLLSHSSIHLHHIPVPY--VVGFVAFFAVALFIVEFCCGTRSRKCDRPGC 120

Query: 407 KGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPPNGRAVL 466
           KGLKKAMEFDLQLQTEECVK GSK+IDKLPWKGG+  NPDYECLRSELRKMAPPNGRAVL
Sbjct: 121 KGLKKAMEFDLQLQTEECVKTGSKDIDKLPWKGGSEGNPDYECLRSELRKMAPPNGRAVL 180

Query: 467 LFRARCGCPIAKLEGWGTKRGRRHK 488
           LFRARCGCP+AKLEGWG KRGRRHK
Sbjct: 181 LFRARCGCPVAKLEGWGPKRGRRHK 203

[Close]
BLAST of Cp4.1LG12g02300 vs. TrEMBL
Match: F6HDL0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02590 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 3.4e-74
Identity = 157/216 (72.69%), Postives = 170/216 (78.70%), Query Frame = 1 

Query: 277 MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSG 336
           MR+LL   TAMP +S  S S    K   + N NP+ SLLCKHSPSATLD+LILILVLFSG
Sbjct: 1   MRHLLSTITAMPVTS--SPSPKPRKPSMNPNANPNCSLLCKHSPSATLDILILILVLFSG 60

Query: 337 TFLVTSYFSYIFNSLS-----ILLSHSAPQLPQFPFPFPFIAGFLLFFCVTIGVFEICCG 396
           TFL+TSYFSYI  SLS     I+LSHS   L     P P+I GFL+FF V I   E+CCG
Sbjct: 61  TFLITSYFSYIVQSLSLILPSIILSHS---LSFRESPGPYILGFLVFFAVFIVTIELCCG 120

Query: 397 ARSRKCAKPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELR 456
            RSRKC  PGCKGLKKAMEFDLQLQTEEC+K+ SKEID LPWKGG+ ANPDYECLRSELR
Sbjct: 121 YRSRKCDNPGCKGLKKAMEFDLQLQTEECLKSSSKEIDVLPWKGGSEANPDYECLRSELR 180

Query: 457 KMAPPNGRAVLLFRARCGCPIAKLEGWGTKRGRRHK 488
           KMAPPNGRAVLLFRARCGCPIAKLEGWG KRGRRHK
Sbjct: 181 KMAPPNGRAVLLFRARCGCPIAKLEGWGPKRGRRHK 211

[Close]
BLAST of Cp4.1LG12g02300 vs. TrEMBL
Match: A9PHB0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s03100g PE=2 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 8.3e-73
Identity = 151/218 (69.27%), Postives = 177/218 (81.19%), Query Frame = 1 

Query: 277 MRNLLVPTT--AMPPSSILS----SSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILI 336
           M +LL+P     MPPSS  +     SSS   + T++NPN S SLLCKHSPSATLDLLILI
Sbjct: 1   MHHLLLPLFFFTMPPSSSFTPKPHKSSSSNTANTNSNPN-STSLLCKHSPSATLDLLILI 60

Query: 337 LVLFSGTFLVTSYFSYIFNSLSILLSHSAPQLPQFPFPFPFIAGFLLFFCVTIGVFEICC 396
           LVLFSGTFL+TSYFSYIFNSLS+LLS+S+  L  FP PF +I GF   F ++I  FE CC
Sbjct: 61  LVLFSGTFLLTSYFSYIFNSLSLLLSNSSLSL-HFP-PFSYILGFFSLFILSILFFEFCC 120

Query: 397 GARSRKCAKPGCKGLKKAMEFDLQLQTEECVKN-GSKEIDKLPWKGGNVANPDYECLRSE 456
           G RSRKC +PGCKG KKA+EFDLQLQTE+C+K+  + ++DKLPWKGG V+NPDYECLR+E
Sbjct: 121 GPRSRKCHQPGCKGFKKAIEFDLQLQTEDCLKSTAANDVDKLPWKGGTVSNPDYECLRAE 180

Query: 457 LRKMAPPNGRAVLLFRARCGCPIAKLEGWGTKRGRRHK 488
           LRKMAPPNGRAVLLFR++CGCP+AKLEGWG KRGRRHK
Sbjct: 181 LRKMAPPNGRAVLLFRSKCGCPVAKLEGWGPKRGRRHK 215

[Close]
BLAST of Cp4.1LG12g02300 vs. TrEMBL
Match: W9RWJ1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010037 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.1e-72
Identity = 153/219 (69.86%), Postives = 173/219 (79.00%), Query Frame = 1 

Query: 277 MRNLLVPTTAMPPSSILSSSSSIPKSKT-------SANPNPS-NSLLCKHSPSATLDLLI 336
           MR+LL+PT  MP SS  SSSSS   S +       S+NPNP+ NSL CKHSPSATLDLLI
Sbjct: 1   MRHLLLPT--MPASSSSSSSSSAVASPSPTSSKSKSSNPNPNPNSLPCKHSPSATLDLLI 60

Query: 337 LILVLFSGTFLVTSYFSYIFNSLSILLSHSAPQLPQFPFPFPFIAGFLLFFCVTIGVFEI 396
           LILVLFSG+FL+TSYFSYIFNSLS+LLS S+  +       PF+ GF++ F   +   E 
Sbjct: 61  LILVLFSGSFLLTSYFSYIFNSLSLLLSSSSFHVHHVQLHLPFLLGFVVLFAAGVLSAEF 120

Query: 397 CCGARSRKCAKPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRS 456
           C GARSRKC +PGCKGLKKAMEFDL+LQ EE V+  SKEID+LPWKGG+ ANPDYECLRS
Sbjct: 121 CFGARSRKCDRPGCKGLKKAMEFDLKLQNEESVRGASKEIDRLPWKGGSEANPDYECLRS 180

Query: 457 ELRKMAPPNGRAVLLFRARCGCPIAKLEGWGTKRGRRHK 488
           ELRKMAP NGRAVLLFRARCGCP+AKLEGWG KRGRRHK
Sbjct: 181 ELRKMAPSNGRAVLLFRARCGCPVAKLEGWGPKRGRRHK 217

[Close]
BLAST of Cp4.1LG12g02300 vs. TAIR10
Match: AT3G06180.1 (AT3G06180.1 Ribosomal protein L34e superfamily protein)

HSP 1 Score: 262.7 bits (670), Expect = 4.5e-70
Identity = 141/216 (65.28%), Postives = 166/216 (76.85%), Query Frame = 1 

Query: 284 TTAMPPSSILSSSSSIPKSKTSANPNPSNSL-LCKHSPSATLDLLILILVLFSGTFLVTS 343
           T +MPPSS  S S+S   S +S++   S+SL LCKHSPSATLDLLILILVLFSG FL++S
Sbjct: 15  TNSMPPSSSASRSASNHSSSSSSS---SSSLHLCKHSPSATLDLLILILVLFSGAFLLSS 74

Query: 344 YFSYIFNSLSILLSHSAPQLPQFPF----------PFPFIAGFLLFFCVTIGVFEICCGA 403
           YFSY+F+S S+L SH  P L    F          P  +   F +FF  +I   ++CCG 
Sbjct: 75  YFSYLFHSFSLLSSHF-PSLSSLIFSDDEDLSSIPPASYFFAFAVFFAASIAFLDLCCGP 134

Query: 404 RSRKCAKPGCKGLKKAMEFDLQLQTEECVKNGS-KEIDKLPWKGGNVANPDYECLRSELR 463
           RSRKC  P CKGLKKAMEFDLQLQTEECVK+G+ KEID+LPWKGG+ +NPDYECLR+ELR
Sbjct: 135 RSRKCRNPKCKGLKKAMEFDLQLQTEECVKSGATKEIDRLPWKGGSESNPDYECLRAELR 194

Query: 464 KMAPPNGRAVLLFRARCGCPIAKLEGWGTKRGRRHK 488
           +MAPPNGRAVLLFR+RCGCP+AKLEGWG KRGRRHK
Sbjct: 195 RMAPPNGRAVLLFRSRCGCPVAKLEGWGPKRGRRHK 226

[Close]
BLAST of Cp4.1LG12g02300 vs. TAIR10
Match: AT5G19025.1 (AT5G19025.1 Ribosomal protein L34e superfamily protein)

HSP 1 Score: 238.4 bits (607), Expect = 9.1e-63
Identity = 133/239 (55.65%), Postives = 161/239 (67.36%), Query Frame = 1 

Query: 18  SSSSSIPKSKTSANPNPSNSL-LCKHSPSATLDLLILILVLFSGTFLVTSYFSYIFNSLS 77
           +S++  P S+++AN N S+SL LCKHSPSATLDLLILILVLFSGTFL++SYFSY+ +SLS
Sbjct: 20  NSTTMPPSSRSAANQNSSSSLHLCKHSPSATLDLLILILVLFSGTFLLSSYFSYLIHSLS 79

Query: 78  ILLSHSAPQLPQFPFPF-PFIAGFLLFFC------------------------------- 137
           +L SH     P         +   ++FF                                
Sbjct: 80  LLSSH----FPSITISLSSLLPPLIIFFSSDHSTEDEDHHHPSGKIPPPASFFFAFAVFF 139

Query: 138 -VTIGVFEICCGARSRKCAKPGCKGLKKAMEFDLQLQTEECVKNGS-KEIDKLPWKGGNV 197
             +I   ++CCG+RSRKC  P CKG+KKAMEFDLQLQTEECVK+GS KEID+LPWKGG+ 
Sbjct: 140 AASIAFLDLCCGSRSRKCRNPKCKGMKKAMEFDLQLQTEECVKSGSVKEIDRLPWKGGSE 199

Query: 198 ANPDYECLRSELRKMAPPNGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSG 222
           +NPDYECLR+ELRKMAP NGRAVL+FR++CGCPIAKLEGWG KR RRHK       V G
Sbjct: 200 SNPDYECLRAELRKMAPVNGRAVLIFRSKCGCPIAKLEGWGPKRSRRHKKSPAKLAVKG 254

[Close]
BLAST of Cp4.1LG12g02300 vs. TAIR10
Match: AT3G01170.1 (AT3G01170.1 Ribosomal protein L34e superfamily protein)

HSP 1 Score: 114.8 bits (286), Expect = 1.5e-25
Identity = 76/199 (38.19%), Postives = 113/199 (56.78%), Query Frame = 1 

Query: 294 SSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSGTFLVTSYFSYI------ 353
           S  S   ++K+S++P  S   +C  S SA +D++ILI V+ +  FL   Y   I      
Sbjct: 23  SPKSRNTRNKSSSSPTCSKFPVCDGSQSAAIDVVILIAVITACGFLFFPYVKLITLKSIE 82

Query: 354 -FNSLSILLSHSAPQLPQFPFPFPFIAGFLLFFCVTIGVFEICCGARSRKCAKPGCKGLK 413
            F+ LS+L+     ++ Q P  +  +A  L  FC  I  + +      ++C KP CKGL+
Sbjct: 83  VFSDLSLLVKQ---EILQNPIVYGSLA--LSIFCAAISTWLVILLCTMQRCGKPNCKGLR 142

Query: 414 KAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPPNGRAVLLFRA 473
           KA+EFD+QL+TEECVK+ S +          +    +  L +EL+KMAPPNGRAVL+FRA
Sbjct: 143 KAVEFDIQLETEECVKSSSNKRGMF-----ELPRVHHRELEAELKKMAPPNGRAVLVFRA 202

Query: 474 RCGCPIAKLEGWGTKRGRR 486
           RCGC + +L   G K+ +R
Sbjct: 203 RCGCSVRRLVVSGPKKQQR 211

[Close]
BLAST of Cp4.1LG12g02300 vs. TAIR10
Match: AT5G15260.1 (AT5G15260.1 Ribosomal protein L34e superfamily protein)

HSP 1 Score: 109.4 bits (272), Expect = 6.4e-24
Identity = 80/201 (39.80%), Postives = 115/201 (57.21%), Query Frame = 1 

Query: 294 SSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSGTFLVTSYFSYI------ 353
           S +SS  +  +S++ + + S+ C  S SA +D++ILI V+ S  FL+  Y  +I      
Sbjct: 30  SRTSSSNRKSSSSSCSSNFSVCCDGSRSAAIDVVILIAVITSSGFLIFPYIKFITIKSVE 89

Query: 354 -FNSLSILLSHSAPQLPQFPFPFPFIAGFLLFFCVTIGVFEICCGARSR-KCAKPGCKGL 413
            F+ LS L+     + P  P  +  IA  L   C  +  + I     SR +C KP CKGL
Sbjct: 90  IFSELSCLVKEEILRNPD-PIVYGLIA--LSISCTALSAWMIVILLCSRHRCGKPNCKGL 149

Query: 414 KKA-MEFDLQLQTEECVK--NGSKEIDKLPWKG-GNVANPDYECLRSELRKMAPPNGRAV 473
           +KA  EFD+QL+TE+CVK  N  K + K   KG   +    +  L +EL+KMAPPNGRAV
Sbjct: 150 RKANAEFDIQLETEDCVKSSNSGKSVSK---KGLFELPRDHHRELEAELKKMAPPNGRAV 209

Query: 474 LLFRARCGCPIAKLEGWGTKR 483
           L+FRA+CGC + +LE  G K+
Sbjct: 210 LVFRAKCGCSVGRLEVPGPKK 224

[Close]
BLAST of Cp4.1LG12g02300 vs. NCBI nr
Match: gi|778714189|ref|XP_011657202.1| (PREDICTED: uncharacterized protein At5g19025 isoform X1 [Cucumis sativus])

HSP 1 Score: 427.9 bits (1099), Expect = 2.3e-116
Identity = 217/227 (95.59%), Postives = 220/227 (96.92%), Query Frame = 1 

Query: 1   MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSG 60
           MRNLLVPTTAMPPSSILSSSSSI KSKTS NP+PSNSLLCKHSPSATLDLLILILVLFSG
Sbjct: 1   MRNLLVPTTAMPPSSILSSSSSISKSKTSTNPSPSNSLLCKHSPSATLDLLILILVLFSG 60

Query: 61  TFLVTSYFSYIFNSLSILLSHSAPQLPQFPFPFPFIAGFLLFFCVTIGVFEICCGARSRK 120
           TFLVTSYFSYIFNSLSILLSHSAPQLPQ  FPF FIAGFLLFFCVTIGVFEICCGARSRK
Sbjct: 61  TFLVTSYFSYIFNSLSILLSHSAPQLPQ--FPFTFIAGFLLFFCVTIGVFEICCGARSRK 120

Query: 121 CAKPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPP 180
           CAKPGCKGLKKAMEFDLQLQTEECVK+GSKEIDKLPWKGG+ ANPDYECLRSELRKMAPP
Sbjct: 121 CAKPGCKGLKKAMEFDLQLQTEECVKSGSKEIDKLPWKGGSEANPDYECLRSELRKMAPP 180

Query: 181 NGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGTRLAYP 228
           NGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSG RLAYP
Sbjct: 181 NGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGARLAYP 225

[Close]
BLAST of Cp4.1LG12g02300 vs. NCBI nr
Match: gi|659117340|ref|XP_008458549.1| (PREDICTED: uncharacterized protein At5g19025 isoform X1 [Cucumis melo])

HSP 1 Score: 423.3 bits (1087), Expect = 5.7e-115
Identity = 215/226 (95.13%), Postives = 218/226 (96.46%), Query Frame = 1 

Query: 1   MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSG 60
           MRNLLVPTTAMPPSSILSSSSSI KSKTS NP+PSNSLLCKHSPSATLDLLILILVLFSG
Sbjct: 1   MRNLLVPTTAMPPSSILSSSSSISKSKTSTNPSPSNSLLCKHSPSATLDLLILILVLFSG 60

Query: 61  TFLVTSYFSYIFNSLSILLSHSAPQLPQFPFPFPFIAGFLLFFCVTIGVFEICCGARSRK 120
           TFLVTSYFSYIFNSLSILLSHSAPQLPQFPF   FIAGFLLFFC TIGVFEICCGARSRK
Sbjct: 61  TFLVTSYFSYIFNSLSILLSHSAPQLPQFPFT--FIAGFLLFFCFTIGVFEICCGARSRK 120

Query: 121 CAKPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPP 180
           CAKPGCKGLKKAMEFDLQLQTEECVK+GSKEIDKLPWKGG+ ANPDYECLRSELRKMAPP
Sbjct: 121 CAKPGCKGLKKAMEFDLQLQTEECVKSGSKEIDKLPWKGGSEANPDYECLRSELRKMAPP 180

Query: 181 NGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGTRLAY 227
           NGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSG RLAY
Sbjct: 181 NGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGARLAY 224

[Close]
BLAST of Cp4.1LG12g02300 vs. NCBI nr
Match: gi|778714192|ref|XP_011657203.1| (PREDICTED: uncharacterized protein At5g19025 isoform X2 [Cucumis sativus])

HSP 1 Score: 397.1 bits (1019), Expect = 4.4e-107
Identity = 204/223 (91.48%), Postives = 209/223 (93.72%), Query Frame = 1 

Query: 1   MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSG 60
           MRNLLVPTTAMPPSSILSSSSSI KSKTS NP+PSNSLLCKHSPSATLDLLILILVLFSG
Sbjct: 1   MRNLLVPTTAMPPSSILSSSSSISKSKTSTNPSPSNSLLCKHSPSATLDLLILILVLFSG 60

Query: 61  TFLVTSYFSYIFNSLSILLSHSAPQLPQFPFPFPFIAGFLLFFCVTIGVFEICCGARSRK 120
           TFLVTSYFSYIFNSLSILLSHSAPQLPQFPF   FIAGFLLFFCVTIGVFEICCGARSRK
Sbjct: 61  TFLVTSYFSYIFNSLSILLSHSAPQLPQFPFT--FIAGFLLFFCVTIGVFEICCGARSRK 120

Query: 121 CAKPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPP 180
           CAKPGCKGLKKAMEFDLQLQTEECVK+GSKEIDKLPWKGG+ ANPDYECLRSELRKMAPP
Sbjct: 121 CAKPGCKGLKKAMEFDLQLQTEECVKSGSKEIDKLPWKGGSEANPDYECLRSELRKMAPP 180

Query: 181 NGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGTR 224
           NGRAVLLFRARCGCPIAKLEGWGTKRGRRHK       ++G R
Sbjct: 181 NGRAVLLFRARCGCPIAKLEGWGTKRGRRHKKALATLGLNGGR 221

[Close]
BLAST of Cp4.1LG12g02300 vs. NCBI nr
Match: gi|659117342|ref|XP_008458550.1| (PREDICTED: uncharacterized protein At5g19025 isoform X2 [Cucumis melo])

HSP 1 Score: 395.2 bits (1014), Expect = 1.7e-106
Identity = 203/223 (91.03%), Postives = 208/223 (93.27%), Query Frame = 1 

Query: 1   MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSG 60
           MRNLLVPTTAMPPSSILSSSSSI KSKTS NP+PSNSLLCKHSPSATLDLLILILVLFSG
Sbjct: 1   MRNLLVPTTAMPPSSILSSSSSISKSKTSTNPSPSNSLLCKHSPSATLDLLILILVLFSG 60

Query: 61  TFLVTSYFSYIFNSLSILLSHSAPQLPQFPFPFPFIAGFLLFFCVTIGVFEICCGARSRK 120
           TFLVTSYFSYIFNSLSILLSHSAPQLPQFPF   FIAGFLLFFC TIGVFEICCGARSRK
Sbjct: 61  TFLVTSYFSYIFNSLSILLSHSAPQLPQFPFT--FIAGFLLFFCFTIGVFEICCGARSRK 120

Query: 121 CAKPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPP 180
           CAKPGCKGLKKAMEFDLQLQTEECVK+GSKEIDKLPWKGG+ ANPDYECLRSELRKMAPP
Sbjct: 121 CAKPGCKGLKKAMEFDLQLQTEECVKSGSKEIDKLPWKGGSEANPDYECLRSELRKMAPP 180

Query: 181 NGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGTR 224
           NGRAVLLFRARCGCPIAKLEGWGTKRGRRHK       ++G R
Sbjct: 181 NGRAVLLFRARCGCPIAKLEGWGTKRGRRHKKALATLGLNGGR 221

[Close]
BLAST of Cp4.1LG12g02300 vs. NCBI nr
Match: gi|645232755|ref|XP_008223014.1| (PREDICTED: uncharacterized protein At5g19025-like [Prunus mume])

HSP 1 Score: 307.8 bits (787), Expect = 3.5e-80
Identity = 160/217 (73.73%), Postives = 180/217 (82.95%), Query Frame = 1 

Query: 277 MRNLLVPT--TAMPPSSILSSSSS-IPKSKTS---ANPNPSNSLLCKHSPSATLDLLILI 336
           MR++L  T  T MP S+  +SSSS  PK K+S   +N NP+ +LLCKHSPSATLDLLILI
Sbjct: 1   MRHMLFATITTTMPSSAAATSSSSPTPKPKSSNPNSNGNPNCTLLCKHSPSATLDLLILI 60

Query: 337 LVLFSGTFLVTSYFSYIFNSLSILLSHSAPQLPQFPFPFPFIAGFLLFFCVTIGVFEICC 396
           LVLFSGTFL+TSYFSYIFNSLS+LLSHS+  L     P P++ GF+ FF V + + E CC
Sbjct: 61  LVLFSGTFLITSYFSYIFNSLSLLLSHSSIHLHH--IPVPYVVGFVAFFAVALFIVEFCC 120

Query: 397 GARSRKCAKPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSEL 456
           G RSRKC +PGCKGLKKAMEFDLQLQTEECVK GSK+IDKLPWKGG+  NPDYECLRSEL
Sbjct: 121 GTRSRKCDRPGCKGLKKAMEFDLQLQTEECVKTGSKDIDKLPWKGGSEGNPDYECLRSEL 180

Query: 457 RKMAPPNGRAVLLFRARCGCPIAKLEGWGTKRGRRHK 488
           RKMAPPNGRAVLLFRARCGCP+AKLEGWG KRGRRHK
Sbjct: 181 RKMAPPNGRAVLLFRARCGCPVAKLEGWGPKRGRRHK 215

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g02300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y5902_ARATH1.6e-6155.65Uncharacterized protein At5g19025 OS=Arabidopsis thaliana GN=At5g19025 PE=2 SV=3[more]
BLAST of Cp4.1LG12g02300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEK4_CUCSA1.6e-11695.59Uncharacterized protein OS=Cucumis sativus GN=Csa_6G238650 PE=4 SV=1[more]
M5Y586_PRUPE3.5e-7974.63Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011602mg PE=4 SV=1[more]
F6HDL0_VITVI3.4e-7472.69Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02590 PE=4 SV=... [more]
A9PHB0_POPTR8.3e-7369.27Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s03100g PE=2 SV=1[more]
W9RWJ1_9ROSA1.1e-7269.86Uncharacterized protein OS=Morus notabilis GN=L484_010037 PE=4 SV=1[more]
BLAST of Cp4.1LG12g02300 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G06180.14.5e-7065.28 Ribosomal protein L34e superfamily protein[more]
AT5G19025.19.1e-6355.65 Ribosomal protein L34e superfamily protein[more]
AT3G01170.11.5e-2538.19 Ribosomal protein L34e superfamily protein[more]
AT5G15260.16.4e-2439.80 Ribosomal protein L34e superfamily protein[more]
BLAST of Cp4.1LG12g02300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778714189|ref|XP_011657202.1|2.3e-11695.59PREDICTED: uncharacterized protein At5g19025 isoform X1 [Cucumis sativus][more]
gi|659117340|ref|XP_008458549.1|5.7e-11595.13PREDICTED: uncharacterized protein At5g19025 isoform X1 [Cucumis melo][more]
gi|778714192|ref|XP_011657203.1|4.4e-10791.48PREDICTED: uncharacterized protein At5g19025 isoform X2 [Cucumis sativus][more]
gi|659117342|ref|XP_008458550.1|1.7e-10691.03PREDICTED: uncharacterized protein At5g19025 isoform X2 [Cucumis melo][more]
gi|645232755|ref|XP_008223014.1|3.5e-8073.73PREDICTED: uncharacterized protein At5g19025-like [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR008195Ribosomal_L34Ae
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g02300.1Cp4.1LG12g02300.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008195Ribosomal protein L34AePANTHERPTHR1075960S RIBOSOMAL PROTEIN L34coord: 262..487
score: 3.5E
NoneNo IPR availableunknownCoilCoilcoord: 486..487
scor
NoneNo IPR availablePANTHERPTHR10759:SF3SUBFAMILY NOT NAMEDcoord: 262..487
score: 3.5E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g02300Cucsa.260930Cucumber (Gy14) v1cgycpeB0691
Cp4.1LG12g02300CmaCh17G002750Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g02300CmaCh08G011730Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g02300CmoCh17G002620Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g02300Cla009369Watermelon (97103) v1cpewmB161
Cp4.1LG12g02300Csa6G238650Cucumber (Chinese Long) v2cpecuB150
Cp4.1LG12g02300MELO3C021397Melon (DHL92) v3.5.1cpemeB112
Cp4.1LG12g02300ClCG06G005760Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g02300CSPI06G15610Wild cucumber (PI 183967)cpecpiB152
Cp4.1LG12g02300Lsi09G013610Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g02300MELO3C021397.2Melon (DHL92) v3.6.1cpemedB138
Cp4.1LG12g02300CsaV3_6G018540Cucumber (Chinese Long) v3cpecucB0180
Cp4.1LG12g02300Bhi12G001594Wax gourdcpewgoB0180
Cp4.1LG12g02300CsGy6G014890Cucumber (Gy14) v2cgybcpeB736
Cp4.1LG12g02300Carg15929Silver-seed gourdcarcpeB0450
Cp4.1LG12g02300Carg05456Silver-seed gourdcarcpeB0099
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g02300Cp4.1LG17g01280Cucurbita pepo (Zucchini)cpecpeB169
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g02300Wax gourdcpewgoB0188
Cp4.1LG12g02300Wax gourdcpewgoB0195
Cp4.1LG12g02300Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g02300Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG12g02300Cucumber (Gy14) v1cgycpeB0671
Cp4.1LG12g02300Cucurbita maxima (Rimu)cmacpeB262
Cp4.1LG12g02300Cucurbita maxima (Rimu)cmacpeB810
Cp4.1LG12g02300Cucurbita moschata (Rifu)cmocpeB225
Cp4.1LG12g02300Cucurbita moschata (Rifu)cmocpeB765
Cp4.1LG12g02300Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g02300Wild cucumber (PI 183967)cpecpiB133
Cp4.1LG12g02300Cucumber (Chinese Long) v2cpecuB132
Cp4.1LG12g02300Bottle gourd (USVL1VR-Ls)cpelsiB118
Cp4.1LG12g02300Bottle gourd (USVL1VR-Ls)cpelsiB123
Cp4.1LG12g02300Watermelon (Charleston Gray)cpewcgB139
Cp4.1LG12g02300Watermelon (Charleston Gray)cpewcgB149
Cp4.1LG12g02300Watermelon (97103) v1cpewmB146
Cp4.1LG12g02300Watermelon (97103) v1cpewmB152
Cp4.1LG12g02300Melon (DHL92) v3.5.1cpemeB140
Cp4.1LG12g02300Cucumber (Gy14) v2cgybcpeB303
Cp4.1LG12g02300Melon (DHL92) v3.6.1cpemedB170
Cp4.1LG12g02300Silver-seed gourdcarcpeB0315
Cp4.1LG12g02300Silver-seed gourdcarcpeB0857
Cp4.1LG12g02300Cucumber (Chinese Long) v3cpecucB0154