Carg05456 (gene) Silver-seed gourd

Overview
NameCarg05456
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRibosomal protein
LocationCucurbita_argyrosperma_scaffold_046 : 490345 .. 494227 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTCGAATCCCCTTTTTACAGTCAGATCCCTTATTTTTCCCAGACTGTGAACTCCATTATTGCGAAGCTCTCATTGGGCTCTCTCTATAACATGCGCAATCTTCTGGTTCCGACCACCGCCATGCCTCCGTCCTCGATTCTCTCCTCATCGTCGTCAATTCCCAAATCCAAGACTTCTGCAAACCCTAACCCTAGCAATTCTCTTCTCTGTAAACATTCGCCATCGGCAACCCTTGACCTTCTTATTCTCATTCTTGTTCTCTTTTCTGGTACCTTTCTTGTAACGTCATATTTCTCCTACATTTTCAACTCTTTGTCGATTCTCTTATCGCATTCAGCCCCGCAGCGTCCTCAATTTCCGTTTCCGTTTATTGCTGGGTTTTTGTTGTTCTTTTGTGTGACTATTGGCATGTTTGAGATTTGTTGTGGCGCCAGATCGAGGAAATGCGCGAAGCCGGGATGTAAAGGGTTGAAAAAGGCTATGGAGTTTGATCTGCAATTGCAAACGGAGGAGTGTGTGAAGAATGGGTCGAAGGAGATAGATAAATTGCCGTGGAAAGGTGGTAATGTGGCCAATCCGGATTATGAGTGCTTGAGGTCCGAGCTGAGGAAGATGGCACCACCCAATGGCCGGGCTGTTCTGCTCTTCCGGGCGCGCTGTGGCTGCCCCATCGCGAAGCTTGAAGGCTGGGGGACTAAGCGCGGGCGGCGGCATAAGAAGTAAGTTCATTATTTATTCGATACAGTGCCCATGAATCTTTTTTGGGGATTGTTTTTGTTTGCTCTGATCATTCGAAGGCTTGATCTCTTTCGCTCCTGTTTTGTAATTCTAGAATTGGGTCTGTTCTGCTGCAATTATCCCGACCTCCTTCTCCCTTGCAAAACCCCATAACTGAAAAGAAAATGATGAAGGAAAATGGTGCATCTGAATTTAGATAGCATTTATTGATGTCCCTGTGACATACATGAAACTCTGGACGAACCTTAGTATTCAACTCATTTTGAAACTGGGGTGAAAATTCTTCCCCCTGTCTAATATTTCAGTTAAGATTATGGAAGAGGAAGACTATCTTCTTTCTGTTTGGTGAATCAAAATCTATTATACATCTTCCTTTTATACGTTGATTTCTCAACAAGAAAAAATGTCGATCAGATCAATTCCCATAGACAGGAATCAGGATTATTGCAGTCTCTCATAGTCATGCTCATAAATTCAAGTTCTGGACTGAATTGTTAAATGAAACTAATTCTGTAGCTAACCTTGCCTCCTGGACTCATTGTTGCAGAGTCCCTCATAGTCTTTACTTTCCCTGTTTTGTTTCTGAGCTTATATTTAAATTCATACCGTTCTCGGTCGGTATAGTACTACTATCTTCTGTTTCTTACCCCTTTTTGACATCTATTGAGGATGGTGAAATTCAATTTATGTAAACTTACTTTCGAACTTGTTCTTCCTGGTGCAAATATTACTTTTAGGGAGATAGCTTCTTGTTTCATGCTTTGATCTAGAGAAGATGTTTAGTCGTTTTTTCCCCCATTTGATGCAAGTTCTCTTCACTCTTGGGTCCATTCTTCAAAGTTGGTTAATTATTTTTCAGTGGGAAGCTATGCAAGCAAGTTTCAGGGACTCGGTTAGCATACCCCAAGTAATTTGTTTCTGGTTAGCAATTATTGACTAGGTTGAAGCATTGATGTTCTGTTCTCCTAGCTTCTAACTAAATTTTATGTATGCATGGTGTTCAGCTCTAGTTGATGTTTAATTTACTTAATCTTGCGAGCTTTACCCAATTTCTTTTTGAGTCATGATTTACCTAATAGACCATATCTAATTGTTTTAATGAACCCTGGCATTGGTATATGATGCATTCTGGAACGTTATCATAGCTAAAAAAACCCAAGAGAACAGCCTAGGGGCGGGCTGGGCAGAGAAAACTCCTTCTCGAAAGGACCATAGAAGAAGAGGCTTCTTGTAACCGCCCAAGCCCACCGCTAGTAGATATTGTCTTCTTTGGGCTTTCCCTTTCAGGCTTCCCCTCAAGGTTTTTAAAACGTGTCTGCTAGGAGAGGTTTCTACACTCTTATAAAGAATGTTCCGTTCTCCTCCCCCAACCGATGTGGGATCTCACACTTCCAATTGCAAAACAAATCTATGTAGAGGCTCGAATTACAACAGAATTTTTTGTGAGAGCACCACCATGAGGAGGTGTGCTGTACATTACCGCACAAATATCTTAACAAACCTTTTTCCTTCAAATCTCTTAGGTTTCTCTCCTACCACACAATTCCACAAAACTTTAGTGTTGACTTTAAACCTCACCTTTCCAGGACTTCCAAAAGCTAATCACTTTATTAGGAAGTAGGAACACGATTTGGATTATACTTGATCTACACAATGATGCTATAGCTTTATTTTGCTTCGACAAAAACCAAACGAAGATTGAATTTATTTGTGTCGATATGTTGCCAAATAATCAACCTCTTGACACAAAACAACTTGAACCAGACTCATTGGTTATTATGAACCTGTTCAACATGAGTGAGATTCATCAGAGGTTTTTCAATTAAAAAGATATACCCAATACTTGGTTAGCTTTTTTTTTCTATGAAAATGCTTAACAAGTCGAGTCTTGTCACGTAGTGTTTCAGCAATTTTATCGATGTTCTATATATGCATGTAGCCTTTCTTCCTGGGAAGCTAATTATGATCATCTAGTTGTGTGGCTAGCTTCATCCTATTTTACTTCACTGGTTTCAGTTTCCACAAAAGATGTGGAAGCATGAAAACTGTAATATAACTTGCAGGTTCTATGGATTGGTAATTTTGTCCCAATTTCCTGTTGTACCCCCATGTGGGCAAATGGAATGGGAACCCAAATGTGTAACGGCACAAGCCCACCGCTAGTAGATATTGTCTTATTTGAGCTTTTCCTCAAAAGTTTTAAAAACACGTCTGCTAGGGAGAGGTTAGTAGATTTGGTGGATTGTGAGATCCCACATCGGTTGGAGAGCAAAACGAAACATCCTTTATAAGGGTGTGGAAACCTCTCCATGGTAAACGCGTTTTATAACCTTGAGGGGAAGCCCGAAAGGAAAAGTCCAAAGAGGACAATATCTACTAGCGGTGGGCTTGAGCTATTACACAATGCTTCCCGATTCCTGGCCCACTACTTAATGGCGAGTAGTAAACAAACATATCAATTGGCTGTAGATTCTAGTGTCTGTCTCATCTCAGCTTTTGTACCGACTCTTTACATCGAGCTTTTATTGAGCTATATCAAACCTGAATCCATATCATTTTCGTACGAAGTTAAATCTGCTTCAAGTTCTTTGTTTCAGAAAGCAAATAACAGGGATTTCTTTTGCCTTTGTTCAAGTCAAGCATTCAAAATTTCAAACATGTTTGTTGGGTTAGTTGGCAAGATTTTTAGAATTTGTTCCTGATGATATATATTGGCAAGATCTATAAGAACATAACTGAATATTCAAGTCCTTGAAAGTAAGATGGTCAAACTCTGATGGAGTGTGCCTAACATTTAGTCCTTAGAAAAAGGTTTTGGATTTCTATTTCTGATGAACTGAGGAAGCTGTATAGCACATCTTACATTTACTATGAAGATCATCTTCATATTGTATCCTCATTATGTTAGGAAAAACACGTTTTCACTGATGAACAATCTCATGCACATCTCTGACCTTATGATTTGCTCAAGAAAATCCTCATTTGATTTTTCGATCACATTAGTAATCTTCAATGCTGCCATTTTCCGCAGGGTTCTGGCAACACTGGATCTCAACGGGGGAGGAGATCATCACTGATCGTCGATAGCGACTTCCCATCATTTTACTTAATTTTAGATGCTCTTTCTGAAACATATGGATGA

mRNA sequence

TCTCTCGAATCCCCTTTTTACAGTCAGATCCCTTATTTTTCCCAGACTGTGAACTCCATTATTGCGAAGCTCTCATTGGGCTCTCTCTATAACATGCGCAATCTTCTGGTTCCGACCACCGCCATGCCTCCGTCCTCGATTCTCTCCTCATCGTCGTCAATTCCCAAATCCAAGACTTCTGCAAACCCTAACCCTAGCAATTCTCTTCTCTGTAAACATTCGCCATCGGCAACCCTTGACCTTCTTATTCTCATTCTTGTTCTCTTTTCTGGTACCTTTCTTGTAACGTCATATTTCTCCTACATTTTCAACTCTTTGTCGATTCTCTTATCGCATTCAGCCCCGCAGCGTCCTCAATTTCCGTTTCCGTTTATTGCTGGGTTTTTGTTGTTCTTTTGTGTGACTATTGGCATGTTTGAGATTTGTTGTGGCGCCAGATCGAGGAAATGCGCGAAGCCGGGATGTAAAGGGTTGAAAAAGGCTATGGAGTTTGATCTGCAATTGCAAACGGAGGAGTGTGTGAAGAATGGGTCGAAGGAGATAGATAAATTGCCGTGGAAAGGTGGTAATGTGGCCAATCCGGATTATGAGTGCTTGAGGTCCGAGCTGAGGAAGATGGCACCACCCAATGGCCGGGCTGTTCTGCTCTTCCGGGCGCGCTGTGGCTGCCCCATCGCGAAGCTTGAAGGCTGGGGGACTAAGCGCGGGCGGCGGCATAAGAATGGGAAGCTATGCAAGCAAGTTTCAGGGACTCGGTTAGCATACCCCAATAATCTTCAATGCTGCCATTTTCCGCAGGGTTCTGGCAACACTGGATCTCAACGGGGGAGGAGATCATCACTGATCGTCGATAGCGACTTCCCATCATTTTACTTAATTTTAGATGCTCTTTCTGAAACATATGGATGA

Coding sequence (CDS)

ATGCGCAATCTTCTGGTTCCGACCACCGCCATGCCTCCGTCCTCGATTCTCTCCTCATCGTCGTCAATTCCCAAATCCAAGACTTCTGCAAACCCTAACCCTAGCAATTCTCTTCTCTGTAAACATTCGCCATCGGCAACCCTTGACCTTCTTATTCTCATTCTTGTTCTCTTTTCTGGTACCTTTCTTGTAACGTCATATTTCTCCTACATTTTCAACTCTTTGTCGATTCTCTTATCGCATTCAGCCCCGCAGCGTCCTCAATTTCCGTTTCCGTTTATTGCTGGGTTTTTGTTGTTCTTTTGTGTGACTATTGGCATGTTTGAGATTTGTTGTGGCGCCAGATCGAGGAAATGCGCGAAGCCGGGATGTAAAGGGTTGAAAAAGGCTATGGAGTTTGATCTGCAATTGCAAACGGAGGAGTGTGTGAAGAATGGGTCGAAGGAGATAGATAAATTGCCGTGGAAAGGTGGTAATGTGGCCAATCCGGATTATGAGTGCTTGAGGTCCGAGCTGAGGAAGATGGCACCACCCAATGGCCGGGCTGTTCTGCTCTTCCGGGCGCGCTGTGGCTGCCCCATCGCGAAGCTTGAAGGCTGGGGGACTAAGCGCGGGCGGCGGCATAAGAATGGGAAGCTATGCAAGCAAGTTTCAGGGACTCGGTTAGCATACCCCAATAATCTTCAATGCTGCCATTTTCCGCAGGGTTCTGGCAACACTGGATCTCAACGGGGGAGGAGATCATCACTGATCGTCGATAGCGACTTCCCATCATTTTACTTAATTTTAGATGCTCTTTCTGAAACATATGGATGA

Protein sequence

MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSGTFLVTSYFSYIFNSLSILLSHSAPQRPQFPFPFIAGFLLFFCVTIGMFEICCGARSRKCAKPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPPNGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGTRLAYPNNLQCCHFPQGSGNTGSQRGRRSSLIVDSDFPSFYLILDALSETYG
Homology
[Close]
BLAST of Carg05456 vs. NCBI nr
Match: XP_023548175.1 (uncharacterized protein At5g19025-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 443.0 bits (1138), Expect = 7.5e-121
Identity = 223/227 (98.24%), Postives = 224/227 (98.68%), Query Frame = 0 

Query: 1   MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSG 60
           MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSG
Sbjct: 1   MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSG 60

Query: 61  TFLVTSYFSYIFNSLSILLSHSAPQRPQ--FPFPFIAGFLLFFCVTIGMFEICCGARSRK 120
           TFLVTSYFSYIFNSLSILLSHSAPQ PQ  FPFPFIAGFLLFFCVTIG+FEICCGARSRK
Sbjct: 61  TFLVTSYFSYIFNSLSILLSHSAPQLPQFPFPFPFIAGFLLFFCVTIGVFEICCGARSRK 120

Query: 121 CAKPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPP 180
           CAKPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPP
Sbjct: 121 CAKPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPP 180

Query: 181 NGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGTRLAYP 226
           NGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGTRLAYP
Sbjct: 181 NGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGTRLAYP 227

[Close]
BLAST of Carg05456 vs. NCBI nr
Match: XP_023513614.1 (uncharacterized protein At5g19025-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 419.1 bits (1076), Expect = 1.2e-113
Identity = 208/225 (92.44%), Postives = 216/225 (96.00%), Query Frame = 0 

Query: 1   MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSG 60
           MRNLLVPTTAMPPSSIL+SSSSI KSKT ANP+PSNSLLCKHSPSATLDLLILILVLFSG
Sbjct: 1   MRNLLVPTTAMPPSSILTSSSSISKSKTCANPSPSNSLLCKHSPSATLDLLILILVLFSG 60

Query: 61  TFLVTSYFSYIFNSLSILLSHSAPQRPQFPFPFIAGFLLFFCVTIGMFEICCGARSRKCA 120
           TFLVTSYFSYIFNSLSILLS+SA Q PQFPFPFI GFLLFFCV +G+FEICCGARSRKCA
Sbjct: 61  TFLVTSYFSYIFNSLSILLSYSALQLPQFPFPFIVGFLLFFCVIVGVFEICCGARSRKCA 120

Query: 121 KPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPPNG 180
           KPGCKGLKKAMEFDLQLQTEECVK GSKEIDKLPWKGG+ ANPDYECLRSELRKMAPPNG
Sbjct: 121 KPGCKGLKKAMEFDLQLQTEECVKGGSKEIDKLPWKGGSEANPDYECLRSELRKMAPPNG 180

Query: 181 RAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGTRLAYP 226
           RA+LLFRARCGCPIAKLEGWGTKRGRRHKNGKLCK+VSG RLAYP
Sbjct: 181 RAILLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKKVSGARLAYP 225

[Close]
BLAST of Carg05456 vs. NCBI nr
Match: XP_022930274.1 (uncharacterized protein At5g19025-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 416.0 bits (1068), Expect = 9.8e-113
Identity = 207/225 (92.00%), Postives = 215/225 (95.56%), Query Frame = 0 

Query: 1   MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSG 60
           MRNLLVPTTAMPPSSIL+SSSSI KSKT ANP+PSNSLLCKHSPSATLDLLILILVLFSG
Sbjct: 1   MRNLLVPTTAMPPSSILTSSSSISKSKTCANPSPSNSLLCKHSPSATLDLLILILVLFSG 60

Query: 61  TFLVTSYFSYIFNSLSILLSHSAPQRPQFPFPFIAGFLLFFCVTIGMFEICCGARSRKCA 120
           TFLVTSYFSYIFNSLSILLS+SA Q PQFPFPFI GFLLFFCV +G+FEICCGARSRKCA
Sbjct: 61  TFLVTSYFSYIFNSLSILLSYSALQLPQFPFPFIVGFLLFFCVIVGVFEICCGARSRKCA 120

Query: 121 KPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPPNG 180
           KPGCKGLKKAMEFDLQLQTEECVK GSKEIDKLPWKGG+ ANPDYECLRSELRKMAPPNG
Sbjct: 121 KPGCKGLKKAMEFDLQLQTEECVKGGSKEIDKLPWKGGSEANPDYECLRSELRKMAPPNG 180

Query: 181 RAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGTRLAYP 226
           RA+LLFRARCGCPIAKLEGWGTKRGRRHKNGKLCK+VSG  LAYP
Sbjct: 181 RAILLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKKVSGAWLAYP 225

[Close]
BLAST of Carg05456 vs. NCBI nr
Match: XP_022959004.1 (uncharacterized protein At5g19025-like [Cucurbita moschata])

HSP 1 Score: 414.5 bits (1064), Expect = 2.9e-112
Identity = 207/209 (99.04%), Postives = 208/209 (99.52%), Query Frame = 0 

Query: 1   MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSG 60
           MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSG
Sbjct: 1   MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSG 60

Query: 61  TFLVTSYFSYIFNSLSILLSHSAPQRPQFPFPFIAGFLLFFCVTIGMFEICCGARSRKCA 120
           TFLVTSYFSYIFNSLSILLSHSAPQ PQFPFPFIAGFLLFFCVTIG+FEICCGARSRKCA
Sbjct: 61  TFLVTSYFSYIFNSLSILLSHSAPQLPQFPFPFIAGFLLFFCVTIGVFEICCGARSRKCA 120

Query: 121 KPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPPNG 180
           KPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPPNG
Sbjct: 121 KPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPPNG 180

Query: 181 RAVLLFRARCGCPIAKLEGWGTKRGRRHK 210
           RAVLLFRARCGCPIAKLEGWGTKRGRRHK
Sbjct: 181 RAVLLFRARCGCPIAKLEGWGTKRGRRHK 209

[Close]
BLAST of Carg05456 vs. NCBI nr
Match: XP_022999809.1 (uncharacterized protein At5g19025-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 414.1 bits (1063), Expect = 3.7e-112
Identity = 206/224 (91.96%), Postives = 214/224 (95.54%), Query Frame = 0 

Query: 1   MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSG 60
           MRNLLVPTTAMPPSSIL+SSSSI KSKT ANP+PSNSLLCKHSPSATLDLLILILVLFSG
Sbjct: 1   MRNLLVPTTAMPPSSILTSSSSISKSKTCANPSPSNSLLCKHSPSATLDLLILILVLFSG 60

Query: 61  TFLVTSYFSYIFNSLSILLSHSAPQRPQFPFPFIAGFLLFFCVTIGMFEICCGARSRKCA 120
           TFLV SYFSYIFNSLSILLS+SA Q PQFPFPFI GFLLFFCV +G+FEICCGARSRKCA
Sbjct: 61  TFLVKSYFSYIFNSLSILLSYSALQLPQFPFPFIVGFLLFFCVIVGVFEICCGARSRKCA 120

Query: 121 KPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPPNG 180
           KPGCKGLKKAMEFDLQLQTEECVK GSKEIDKLPWKGG+ ANPDYECLRSELRKMAPPNG
Sbjct: 121 KPGCKGLKKAMEFDLQLQTEECVKGGSKEIDKLPWKGGSEANPDYECLRSELRKMAPPNG 180

Query: 181 RAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGTRLAY 225
           RA+LLFRARCGCPIAKLEGWGTKRGRRHKNGKLCK+VSG RLAY
Sbjct: 181 RAILLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKKVSGARLAY 224

[Close]
BLAST of Carg05456 vs. TAIR10
Match: AT3G06180.1 (Ribosomal protein L34e superfamily protein)

HSP 1 Score: 252.7 bits (644), Expect = 2.6e-67
Identity = 124/186 (66.67%), Postives = 144/186 (77.42%), Query Frame = 0 

Query: 39  LCKHSPSATLDLLILILVLFSGTFLVTSYFSYIFNSLSILLSHSAPQRPQF--------- 98
           LCKHSPSATLDLLILILVLFSG FL++SYFSY+F+S S+L SH                 
Sbjct: 44  LCKHSPSATLDLLILILVLFSGAFLLSSYFSYLFHSFSLLSSHFPSLSSLIFSDDEDLSS 103

Query: 99  --PFPFIAGFLLFFCVTIGMFEICCGARSRKCAKPGCKGLKKAMEFDLQLQTEECVKNG- 158
             P  +   F +FF  +I   ++CCG RSRKC  P CKGLKKAMEFDLQLQTEECVK+G 
Sbjct: 104 IPPASYFFAFAVFFAASIAFLDLCCGPRSRKCRNPKCKGLKKAMEFDLQLQTEECVKSGA 163

Query: 159 SKEIDKLPWKGGNVANPDYECLRSELRKMAPPNGRAVLLFRARCGCPIAKLEGWGTKRGR 213
           +KEID+LPWKGG+ +NPDYECLR+ELR+MAPPNGRAVLLFR+RCGCP+AKLEGWG KRGR
Sbjct: 164 TKEIDRLPWKGGSESNPDYECLRAELRRMAPPNGRAVLLFRSRCGCPVAKLEGWGPKRGR 223

[Close]
BLAST of Carg05456 vs. TAIR10
Match: AT5G19025.1 (Ribosomal protein L34e superfamily protein)

HSP 1 Score: 227.6 bits (579), Expect = 9.0e-60
Identity = 125/222 (56.31%), Postives = 143/222 (64.41%), Query Frame = 0 

Query: 39  LCKHSPSATLDLLILILVLFSGTFLVTSYFSYIFNSLSILLSHSAPQRPQFPFPFIAGFL 98
           LCKHSPSATLDLLILILVLFSGTFL++SYFSY+ +SLS+L SH         FP I   L
Sbjct: 42  LCKHSPSATLDLLILILVLFSGTFLLSSYFSYLIHSLSLLSSH---------FPSITISL 101

Query: 99  ----------------------------------------LFFCVTIGMFEICCGARSRK 158
                                                        +I   ++CCG+RSRK
Sbjct: 102 SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIAFLDLCCGSRSRK 161

Query: 159 CAKPGCKGLKKAMEFDLQLQTEECVKNGS-KEIDKLPWKGGNVANPDYECLRSELRKMAP 218
           C  P CKG+KKAMEFDLQLQTEECVK+GS KEID+LPWKGG+ +NPDYECLR+ELRKMAP
Sbjct: 162 CRNPKCKGMKKAMEFDLQLQTEECVKSGSVKEIDRLPWKGGSESNPDYECLRAELRKMAP 221

Query: 219 PNGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSG 220
            NGRAVL+FR++CGCPIAKLEGWG KR RRHK       V G
Sbjct: 222 VNGRAVLIFRSKCGCPIAKLEGWGPKRSRRHKKSPAKLAVKG 254

[Close]
BLAST of Carg05456 vs. TAIR10
Match: AT3G01170.1 (Ribosomal protein L34e superfamily protein)

HSP 1 Score: 115.5 bits (288), Expect = 5.0e-26
Identity = 75/197 (38.07%), Postives = 110/197 (55.84%), Query Frame = 0 

Query: 18  SSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSGTFLVTSYFSYI------ 77
           S  S   ++K+S++P  S   +C  S SA +D++ILI V+ +  FL   Y   I      
Sbjct: 23  SPKSRNTRNKSSSSPTCSKFPVCDGSQSAAIDVVILIAVITACGFLFFPYVKLITLKSIE 82

Query: 78  -FNSLSILLSHSAPQRPQFPFPFIAGFLLFFCVTIGMFEICCGARSRKCAKPGCKGLKKA 137
            F+ LS+L+     Q    P  + +  L  FC  I  + +      ++C KP CKGL+KA
Sbjct: 83  VFSDLSLLVKQEILQN---PIVYGSLALSIFCAAISTWLVILLCTMQRCGKPNCKGLRKA 142

Query: 138 MEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPPNGRAVLLFRARC 197
           +EFD+QL+TEECVK+ S +          +    +  L +EL+KMAPPNGRAVL+FRARC
Sbjct: 143 VEFDIQLETEECVKSSSNKRGMF-----ELPRVHHRELEAELKKMAPPNGRAVLVFRARC 202

Query: 198 GCPIAKLEGWGTKRGRR 208
           GC + +L   G K+ +R
Sbjct: 203 GCSVRRLVVSGPKKQQR 211

[Close]
BLAST of Carg05456 vs. TAIR10
Match: AT5G15260.1 (Ribosomal protein L34e superfamily protein)

HSP 1 Score: 95.5 bits (236), Expect = 5.3e-20
Identity = 64/157 (40.76%), Postives = 87/157 (55.41%), Query Frame = 0 

Query: 62  FLVTSYFSY-------IFNSLSILLSHSAPQRPQFPFPFIAGF--LLFFCVTIGMFEICC 121
           FL+  Y  +       IF+ LS L+     + P    P + G   L   C  +  + I  
Sbjct: 74  FLIFPYIKFITIKSVEIFSELSCLVKEEILRNPD---PIVYGLIALSISCTALSAWMIVI 133

Query: 122 GARSR-KCAKPGCKGLKKA-MEFDLQLQTEECVK--NGSKEIDKLPWKG-GNVANPDYEC 181
              SR +C KP CKGL+KA  EFD+QL+TE+CVK  N  K + K   KG   +    +  
Sbjct: 134 LLCSRHRCGKPNCKGLRKANAEFDIQLETEDCVKSSNSGKSVSK---KGLFELPRDHHRE 193

Query: 182 LRSELRKMAPPNGRAVLLFRARCGCPIAKLEGWGTKR 205
           L +EL+KMAPPNGRAVL+FRA+CGC + +LE  G K+
Sbjct: 194 LEAELKKMAPPNGRAVLVFRAKCGCSVGRLEVPGPKK 224

[Close]
BLAST of Carg05456 vs. Swiss-Prot
Match: sp|P0C8Q9|Y5902_ARATH (Uncharacterized protein At5g19025 OS=Arabidopsis thaliana OX=3702 GN=At5g19025 PE=2 SV=3)

HSP 1 Score: 227.6 bits (579), Expect = 1.6e-58
Identity = 125/222 (56.31%), Postives = 143/222 (64.41%), Query Frame = 0 

Query: 39  LCKHSPSATLDLLILILVLFSGTFLVTSYFSYIFNSLSILLSHSAPQRPQFPFPFIAGFL 98
           LCKHSPSATLDLLILILVLFSGTFL++SYFSY+ +SLS+L SH         FP I   L
Sbjct: 42  LCKHSPSATLDLLILILVLFSGTFLLSSYFSYLIHSLSLLSSH---------FPSITISL 101

Query: 99  ----------------------------------------LFFCVTIGMFEICCGARSRK 158
                                                        +I   ++CCG+RSRK
Sbjct: 102 SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIAFLDLCCGSRSRK 161

Query: 159 CAKPGCKGLKKAMEFDLQLQTEECVKNGS-KEIDKLPWKGGNVANPDYECLRSELRKMAP 218
           C  P CKG+KKAMEFDLQLQTEECVK+GS KEID+LPWKGG+ +NPDYECLR+ELRKMAP
Sbjct: 162 CRNPKCKGMKKAMEFDLQLQTEECVKSGSVKEIDRLPWKGGSESNPDYECLRAELRKMAP 221

Query: 219 PNGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSG 220
            NGRAVL+FR++CGCPIAKLEGWG KR RRHK       V G
Sbjct: 222 VNGRAVLIFRSKCGCPIAKLEGWGPKRSRRHKKSPAKLAVKG 254

[Close]
BLAST of Carg05456 vs. TrEMBL
Match: tr|A0A0A0KEK4|A0A0A0KEK4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G238650 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 3.3e-93
Identity = 180/225 (80.00%), Postives = 183/225 (81.33%), Query Frame = 0 

Query: 1   MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSG 60
           MRNLLVPTTAMPPSSILSS                                      FSG
Sbjct: 1   MRNLLVPTTAMPPSSILSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSG 60

Query: 61  TFLVTSYFSYIFNSLSILLSHSAPQRPQFPFPFIAGFLLFFCVTIGMFEICCGARSRKCA 120
           TFLVTSYFSYIFNSLSILLSHSAPQ PQFPF FIAGFLLFFCVTIG+FEICCGARSRKCA
Sbjct: 61  TFLVTSYFSYIFNSLSILLSHSAPQLPQFPFTFIAGFLLFFCVTIGVFEICCGARSRKCA 120

Query: 121 KPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPPNG 180
           KPGCKGLKKAMEFDLQLQTEECVK+GSKEIDKLPWKGG+ ANPDYECLRSELRKMAPPNG
Sbjct: 121 KPGCKGLKKAMEFDLQLQTEECVKSGSKEIDKLPWKGGSEANPDYECLRSELRKMAPPNG 180

Query: 181 RAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGTRLAYP 226
           RAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSG RLAYP
Sbjct: 181 RAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGARLAYP 225

[Close]
BLAST of Carg05456 vs. TrEMBL
Match: tr|A0A1S3C841|A0A1S3C841_CUCME (uncharacterized protein At5g19025 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497920 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 8.2e-92
Identity = 178/224 (79.46%), Postives = 181/224 (80.80%), Query Frame = 0 

Query: 1   MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSG 60
           MRNLLVPTTAMPPSSILSS                                      FSG
Sbjct: 1   MRNLLVPTTAMPPSSILSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSG 60

Query: 61  TFLVTSYFSYIFNSLSILLSHSAPQRPQFPFPFIAGFLLFFCVTIGMFEICCGARSRKCA 120
           TFLVTSYFSYIFNSLSILLSHSAPQ PQFPF FIAGFLLFFC TIG+FEICCGARSRKCA
Sbjct: 61  TFLVTSYFSYIFNSLSILLSHSAPQLPQFPFTFIAGFLLFFCFTIGVFEICCGARSRKCA 120

Query: 121 KPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPPNG 180
           KPGCKGLKKAMEFDLQLQTEECVK+GSKEIDKLPWKGG+ ANPDYECLRSELRKMAPPNG
Sbjct: 121 KPGCKGLKKAMEFDLQLQTEECVKSGSKEIDKLPWKGGSEANPDYECLRSELRKMAPPNG 180

Query: 181 RAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGTRLAY 225
           RAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSG RLAY
Sbjct: 181 RAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGARLAY 224

[Close]
BLAST of Carg05456 vs. TrEMBL
Match: tr|A0A1S3C8P6|A0A1S3C8P6_CUCME (uncharacterized protein At5g19025 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497920 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 1.8e-83
Identity = 166/221 (75.11%), Postives = 171/221 (77.38%), Query Frame = 0 

Query: 1   MRNLLVPTTAMPPSSILSSSSSIPKSKTSANPNPSNSLLCKHSPSATLDLLILILVLFSG 60
           MRNLLVPTTAMPPSSILSS                                      FSG
Sbjct: 1   MRNLLVPTTAMPPSSILSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSG 60

Query: 61  TFLVTSYFSYIFNSLSILLSHSAPQRPQFPFPFIAGFLLFFCVTIGMFEICCGARSRKCA 120
           TFLVTSYFSYIFNSLSILLSHSAPQ PQFPF FIAGFLLFFC TIG+FEICCGARSRKCA
Sbjct: 61  TFLVTSYFSYIFNSLSILLSHSAPQLPQFPFTFIAGFLLFFCFTIGVFEICCGARSRKCA 120

Query: 121 KPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKLPWKGGNVANPDYECLRSELRKMAPPNG 180
           KPGCKGLKKAMEFDLQLQTEECVK+GSKEIDKLPWKGG+ ANPDYECLRSELRKMAPPNG
Sbjct: 121 KPGCKGLKKAMEFDLQLQTEECVKSGSKEIDKLPWKGGSEANPDYECLRSELRKMAPPNG 180

Query: 181 RAVLLFRARCGCPIAKLEGWGTKRGRRHKNGKLCKQVSGTR 222
           RAVLLFRARCGCPIAKLEGWGTKRGRRHK       ++G R
Sbjct: 181 RAVLLFRARCGCPIAKLEGWGTKRGRRHKKALATLGLNGGR 221

[Close]
BLAST of Carg05456 vs. TrEMBL
Match: tr|A0A0D2VN85|A0A0D2VN85_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G170000 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.2e-72
Identity = 138/177 (77.97%), Postives = 153/177 (86.44%), Query Frame = 0 

Query: 38  LLCKHSPSATLDLLILILVLFSGTFLVTSYFSYIFNSLSILLSH-SAPQRPQFPFPFIA- 97
           LLCKHSPSATLDLLILILVLFSGTFL++SYFSY+F+SLS+LLS   + Q   F  PF++ 
Sbjct: 49  LLCKHSPSATLDLLILILVLFSGTFLLSSYFSYLFHSLSLLLSPLLSTQSASFSLPFVSY 108

Query: 98  --GFLLFFCVTIGMFEICCGARSRKCAKPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKL 157
             G  LFF  T+   E CCG+RSRKC KPGCKGLKKA+EFDLQLQTE+CVKNGSKEID+L
Sbjct: 109 LLGCTLFFVTTLISIEFCCGSRSRKCEKPGCKGLKKALEFDLQLQTEDCVKNGSKEIDRL 168

Query: 158 PWKGGNVANPDYECLRSELRKMAPPNGRAVLLFRARCGCPIAKLEGWGTKRGRRHKN 211
           PWKGG+  NPDYECLR+ELRKMAPPNGRAVLLFRARCGCPIAKLEGWG KRGRRHKN
Sbjct: 169 PWKGGSEGNPDYECLRAELRKMAPPNGRAVLLFRARCGCPIAKLEGWGPKRGRRHKN 225

[Close]
BLAST of Carg05456 vs. TrEMBL
Match: tr|A0A0D2UU87|A0A0D2UU87_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G170000 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.6e-72
Identity = 138/178 (77.53%), Postives = 153/178 (85.96%), Query Frame = 0 

Query: 38  LLCKHSPSATLDLLILILVLFSGTFLVTSYFSYIFNSLSILLSH-SAPQRPQFPFPFIA- 97
           LLCKHSPSATLDLLILILVLFSGTFL++SYFSY+F+SLS+LLS   + Q   F  PF++ 
Sbjct: 49  LLCKHSPSATLDLLILILVLFSGTFLLSSYFSYLFHSLSLLLSPLLSTQSASFSLPFVSY 108

Query: 98  --GFLLFFCVTIGMFEICCGARSRKCAKPGCKGLKKAMEFDLQLQTEECVKNGSKEIDKL 157
             G  LFF  T+   E CCG+RSRKC KPGCKGLKKA+EFDLQLQTE+CVKNGSKEID+L
Sbjct: 109 LLGCTLFFVTTLISIEFCCGSRSRKCEKPGCKGLKKALEFDLQLQTEDCVKNGSKEIDRL 168

Query: 158 PWKGGNVANPDYECLRSELRKMAPPNGRAVLLFRARCGCPIAKLEGWGTKRGRRHKNG 212
           PWKGG+  NPDYECLR+ELRKMAPPNGRAVLLFRARCGCPIAKLEGWG KRGRRHK G
Sbjct: 169 PWKGGSEGNPDYECLRAELRKMAPPNGRAVLLFRARCGCPIAKLEGWGPKRGRRHKKG 226

The following BLAST results are available for this feature:
BLAST of Carg05456 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023548175.17.5e-12198.24uncharacterized protein At5g19025-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023513614.11.2e-11392.44uncharacterized protein At5g19025-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022930274.19.8e-11392.00uncharacterized protein At5g19025-like isoform X1 [Cucurbita moschata][more]
XP_022959004.12.9e-11299.04uncharacterized protein At5g19025-like [Cucurbita moschata][more]
XP_022999809.13.7e-11291.96uncharacterized protein At5g19025-like isoform X1 [Cucurbita maxima][more]
BLAST of Carg05456 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G06180.12.6e-6766.67Ribosomal protein L34e superfamily protein[more]
AT5G19025.19.0e-6056.31Ribosomal protein L34e superfamily protein[more]
AT3G01170.15.0e-2638.07Ribosomal protein L34e superfamily protein[more]
AT5G15260.15.3e-2040.76Ribosomal protein L34e superfamily protein[more]
BLAST of Carg05456 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P0C8Q9|Y5902_ARATH1.6e-5856.31Uncharacterized protein At5g19025 OS=Arabidopsis thaliana OX=3702 GN=At5g19025 P... [more]
BLAST of Carg05456 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KEK4|A0A0A0KEK4_CUCSA3.3e-9380.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G238650 PE=4 SV=1[more]
tr|A0A1S3C841|A0A1S3C841_CUCME8.2e-9279.46uncharacterized protein At5g19025 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349... [more]
tr|A0A1S3C8P6|A0A1S3C8P6_CUCME1.8e-8375.11uncharacterized protein At5g19025 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349... [more]
tr|A0A0D2VN85|A0A0D2VN85_GOSRA4.2e-7277.97Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G170000 PE=4 ... [more]
tr|A0A0D2UU87|A0A0D2UU87_GOSRA5.6e-7277.53Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G170000 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR008195Ribosomal_L34Ae
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05456-RACarg05456-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availablePANTHERPTHR10759:SF32SUBFAMILY NOT NAMEDcoord: 1..213
IPR008195Ribosomal protein L34AePANTHERPTHR1075960S RIBOSOMAL PROTEIN L34coord: 1..213

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg05456Cla009369Watermelon (97103) v1carwmB0073
Carg05456Csa6G238650Cucumber (Chinese Long) v2carcuB0076
Carg05456MELO3C021397Melon (DHL92) v3.5.1carmeB0067
Carg05456ClCG06G005760Watermelon (Charleston Gray)carwcgB0073
Carg05456CSPI06G15610Wild cucumber (PI 183967)carcpiB0080
Carg05456Cucsa.260930Cucumber (Gy14) v1carcgyB0084
Carg05456CmaCh08G011730Cucurbita maxima (Rimu)carcmaB0096
Carg05456CmaCh17G002750Cucurbita maxima (Rimu)carcmaB0091
Carg05456CmoCh17G002620Cucurbita moschata (Rifu)carcmoB0097
Carg05456Lsi09G013610Bottle gourd (USVL1VR-Ls)carlsiB061
Carg05456Cp4.1LG12g02300Cucurbita pepo (Zucchini)carcpeB0099
Carg05456Cp4.1LG17g01280Cucurbita pepo (Zucchini)carcpeB0104
Carg05456CsGy6G014890Cucumber (Gy14) v2carcgybB0082
Carg05456MELO3C021397.2Melon (DHL92) v3.6.1carmedB0068
Carg05456CsaV3_6G018540Cucumber (Chinese Long) v3carcucB0089
Carg05456Cla97C06G115270Watermelon (97103) v2carwmbB0070
Carg05456Bhi12G001594Wax gourdcarwgoB0083
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg05456Carg15929Silver-seed gourdcarcarB080
The following block(s) are covering this gene:
GeneOrganismBlock
Carg05456Melon (DHL92) v3.5.1carmeB0073
Carg05456Melon (DHL92) v3.6.1carmedB0074
Carg05456Watermelon (Charleston Gray)carwcgB0072
Carg05456Watermelon (97103) v1carwmB0070
Carg05456Watermelon (97103) v2carwmbB0069
Carg05456Wax gourdcarwgoB0086
Carg05456Silver-seed gourdcarcarB078
Carg05456Silver-seed gourdcarcarB083
Carg05456Cucumber (Gy14) v2carcgybB0071
Carg05456Cucumber (Gy14) v1carcgyB0083
Carg05456Cucurbita maxima (Rimu)carcmaB0090
Carg05456Cucurbita maxima (Rimu)carcmaB0094
Carg05456Cucurbita moschata (Rifu)carcmoB0096
Carg05456Cucurbita moschata (Rifu)carcmoB0102
Carg05456Cucurbita moschata (Rifu)carcmoB0104
Carg05456Cucurbita pepo (Zucchini)carcpeB0106
Carg05456Cucurbita pepo (Zucchini)carcpeB0109
Carg05456Wild cucumber (PI 183967)carcpiB0074
Carg05456Cucumber (Chinese Long) v2carcuB0071
Carg05456Cucumber (Chinese Long) v3carcucB0078
Carg05456Bottle gourd (USVL1VR-Ls)carlsiB065