Cp4.1LG11g06050 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g06050
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG11 : 3588455 .. 3589384 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTATGGGTTGTGGTAATAGAGCTTTAAGTGACCTTTTTAACTTCTGATTCTCATATTGAATATCCTAGTAACGTTTGCTTGAAGCTGTTTGTTCTCTCTTTCGAAACTATTGCTATTTTTTATGTGGGATGATTGAAACAGTTTGACCTTATAAGCGATATCTTGTAGTTTCAACTATGAAATCTGATTCGTTTTGTTTGTGGTGGTAGAAAAACGCAGCTATGTCAGGGAAGCAGCTAGATCAATGGGGGAATGGGTACCAAAGTTACGACGATGATTTGGATGACTACTCGTACAGTCCTCCTCGCAAGGGAATGTACAAGTGGCAAGAATAGGATATGTGGGTGTTGTTAGTGTAGAAGACAAACAAGTGAGCAGCTATGAACAAAGTTGGAGGACTCACGATCGCAACAGGCATACTGGAACCTATACGACCGCTTCAACAAAGGAGGTTGCTTCTCGTGGTGAAACATTCAAGGAGAGGTCAAGTGGGAGAGTTGGGTCGAAGGATGAGTTCAAAACCACCTCCACTTACAGGGTAGGTGACCGAAATGGATATACCGAGTATCAGCATCAAGAGAGGTTCCGGCGTGTTGATTTTGGCAGCGGCGGCAGCAGCAGCAGCAGAATAAGAGTAGAATTTAGTAGCTGGAACTTGGGTTTGTGGAGTCCCTTTTGTGCAGACTTGCTCTTTGATATGCTGTTTTCTGCCGTAGAAAATAAGATTGAAGAGATAGGCTTTTGTCGTTTTTTTGGTGTTTGCAATGCTCTGATAGATTTAGAGAGCTGAATTGAATATCAGGTATGTTGATAGTCTGTTTGCATATTAGTGTCAAAACTAATCTTCTTTAGGGTAATTTGTTCGTACATTTTGTATCTTTTTGAAGGGTATTATTTTAAGATACAAAATCAAATGAAAATTAA

mRNA sequence

ATGCTTAAAAACGCAGCTATGTCAGGGAAGCAGCTAGATCAATGGGGGAATGGGTACCAAAGTTACGACGATGATTTGGATGACTACTCGTACAGTCCTCCTCGCAAGGGAATTGTAGAAGACAAACAAGTGAGCAGCTATGAACAAAGTTGGAGGACTCACGATCGCAACAGGCATACTGGAACCTATACGACCGCTTCAACAAAGGAGGTTGCTTCTCGTGGTGAAACATTCAAGGAGAGGTCAAGTGGGAGAGTTGGGTCGAAGGATGAGTTCAAAACCACCTCCACTTACAGGGTAGGTGACCGAAATGGATATACCGAGTATCAGCATCAAGAGAGGTTCCGGCGTGTTGATTTTGGCAGCGGCGGCAGCAGCAGCAGCAGAATAAGAGTAGAATTTAGTAGCTGGAACTTGGATACAAAATCAAATGAAAATTAA

Coding sequence (CDS)

ATGCTTAAAAACGCAGCTATGTCAGGGAAGCAGCTAGATCAATGGGGGAATGGGTACCAAAGTTACGACGATGATTTGGATGACTACTCGTACAGTCCTCCTCGCAAGGGAATTGTAGAAGACAAACAAGTGAGCAGCTATGAACAAAGTTGGAGGACTCACGATCGCAACAGGCATACTGGAACCTATACGACCGCTTCAACAAAGGAGGTTGCTTCTCGTGGTGAAACATTCAAGGAGAGGTCAAGTGGGAGAGTTGGGTCGAAGGATGAGTTCAAAACCACCTCCACTTACAGGGTAGGTGACCGAAATGGATATACCGAGTATCAGCATCAAGAGAGGTTCCGGCGTGTTGATTTTGGCAGCGGCGGCAGCAGCAGCAGCAGAATAAGAGTAGAATTTAGTAGCTGGAACTTGGATACAAAATCAAATGAAAATTAA

Protein sequence

MLKNAAMSGKQLDQWGNGYQSYDDDLDDYSYSPPRKGIVEDKQVSSYEQSWRTHDRNRHTGTYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRNGYTEYQHQERFRRVDFGSGGSSSSRIRVEFSSWNLDTKSNEN

Homology

[Close]

BLAST of Cp4.1LG11g06050 vs. TrEMBL
Match: A0A0A0LK69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G049910 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.8e-31
Identity = 76/117 (64.96%), Postives = 93/117 (79.49%), Query Frame = 1


Query: 10  KQLDQWGNGYQSYDDDLDDYSYSPPRK--------GIVEDKQVSSYEQSWRTHDRNRHTG 69
           KQ+  +  GYQ+YD   +DYSY+  ++         ++ED Q+SSYEQSWRTHDRNR TG
Sbjct: 3   KQVGHYDGGYQNYDYS-NDYSYNQGQEVQATIGYIEVIEDNQMSSYEQSWRTHDRNRQTG 62

Query: 70  TYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRNGYTEYQHQERFRRV 119
           + TT+STK VASRGETFKERS+GRVG+KDEFKTTSTYRVGD++GYTEYQ QER RR+
Sbjct: 63  SCTTSSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERLRRI 118

[Close]

BLAST of Cp4.1LG11g06050 vs. TrEMBL
Match: A0A061GQI1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038892 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.7e-17
Identity = 55/101 (54.46%), Postives = 73/101 (72.28%), Query Frame = 1


Query: 29  YSYSPPRKGIVEDKQVSSYEQSWRTHDRNRHTGTYTTASTKEVASRGETFKERSSGRVGS 88
           Y+Y   + G     Q S  + + +T   ++ TG+YT A+ KEV S GETFKERS+GRVG 
Sbjct: 29  YNYQSQQGG-----QSSCNQTTSKTSYVDKQTGSYTRATNKEVVSTGETFKERSTGRVGY 88

Query: 89  KDEFKTTSTYRVGDRNGYTEYQHQERFRRVDFGSGGSSSSR 130
           KDE+KTTSTY+VGD++GYTEYQ +ERFR V + SG SSS++
Sbjct: 89  KDEYKTTSTYKVGDKSGYTEYQVEERFRNVKY-SGNSSSNK 123

[Close]

BLAST of Cp4.1LG11g06050 vs. TrEMBL
Match: A0A067L9C5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23026 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-15
Identity = 54/126 (42.86%), Postives = 78/126 (61.90%), Query Frame = 1


Query: 13  DQWGNGYQSYDD-----DLDDYSYSPPRKGIVED------KQVSSYEQSWRTHDRNRHTG 72
           D +G G  S DD     D D+ +Y    +G+  D      +Q +S +   +    ++ TG
Sbjct: 25  DSYGLGSDSEDDYNEKSDFDEDNYHSDSEGVGSDLEDNHLQQSNSQQSILKNSIVDKKTG 84

Query: 73  TYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRNGYTEYQHQERFRRVDFG 128
           +Y   + K+  S G+ FKERS+GRVG KDEFKTT T++VGD+ GYTE+Q +ER+RRVD+G
Sbjct: 85  SYARTTMKQSYSSGDVFKERSTGRVGYKDEFKTTKTFKVGDKRGYTEHQVEERYRRVDYG 144

[Close]

BLAST of Cp4.1LG11g06050 vs. TrEMBL
Match: A0A067L5T5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23029 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-13
Identity = 44/90 (48.89%), Postives = 63/90 (70.00%), Query Frame = 1


Query: 42  KQVSSYEQSWRTHDR--NRHTGTYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYR 101
           K   S  Q W + +   ++ TG+Y   + K+  S G+ FKERS+GRVG KDE KTTST++
Sbjct: 37  KGQQSNSQQWISRNSIVDKQTGSYAKTTVKQSYSSGDVFKERSTGRVGHKDELKTTSTFK 96

Query: 102 VGDRNGYTEYQHQERFRRVDFGSGGSSSSR 130
           VGD++GY EYQ +ERFR+VD+G+  SS+ +
Sbjct: 97  VGDKSGYYEYQVEERFRKVDYGNSSSSNKK 126

[Close]

BLAST of Cp4.1LG11g06050 vs. TrEMBL
Match: A0A059CRC8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02392 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 43/96 (44.79%), Postives = 64/96 (66.67%), Query Frame = 1


Query: 44  VSSYEQSWRTHDRNRHTGTYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDR 103
           V+SYE S RT  +++ TG Y  A+ K+  + G+T KERS GRVG KDE++ ++T  +GD+
Sbjct: 130 VTSYEWSLRTRHQDKQTGDYARATVKQTFASGDTIKERSKGRVGFKDEYEQSTTITIGDK 189

Query: 104 NGYTEYQHQERFRRVDF------GSGGSSSSRIRVE 134
            GY+EY+ ++R R V++      GSG SSSS  + E
Sbjct: 190 GGYSEYRVEKRLRTVEYGKSSGKGSGDSSSSGYQQE 225

[Close]

BLAST of Cp4.1LG11g06050 vs. NCBI nr
Match: gi|659069861|ref|XP_008452151.1| (PREDICTED: uncharacterized protein LOC103493252 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.7e-35
Identity = 87/128 (67.97%), Postives = 100/128 (78.12%), Query Frame = 1


Query: 10  KQLDQWGNGYQSYDDDL-DDYSYSPPRK--------GIVEDK-QVSSYEQSWRTHDRNRH 69
           KQ+ ++  GYQ+YD D  DDYSY+   +         +VED  Q+SSYEQSWRTHDRNR 
Sbjct: 3   KQVGRYDGGYQNYDYDYSDDYSYNQGPEVQATIGYLEVVEDNNQMSSYEQSWRTHDRNRQ 62

Query: 70  TGTYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRNGYTEYQHQERFRRVD 128
           TG+YTT STK VASRGETFKERS+GRVG+KDEFKTTSTYRVGD++GYTEYQ QERFRRVD
Sbjct: 63  TGSYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERFRRVD 122

[Close]

BLAST of Cp4.1LG11g06050 vs. NCBI nr
Match: gi|700205983|gb|KGN61102.1| (hypothetical protein Csa_2G049910 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-31
Identity = 76/117 (64.96%), Postives = 93/117 (79.49%), Query Frame = 1


Query: 10  KQLDQWGNGYQSYDDDLDDYSYSPPRK--------GIVEDKQVSSYEQSWRTHDRNRHTG 69
           KQ+  +  GYQ+YD   +DYSY+  ++         ++ED Q+SSYEQSWRTHDRNR TG
Sbjct: 3   KQVGHYDGGYQNYDYS-NDYSYNQGQEVQATIGYIEVIEDNQMSSYEQSWRTHDRNRQTG 62

Query: 70  TYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRNGYTEYQHQERFRRV 119
           + TT+STK VASRGETFKERS+GRVG+KDEFKTTSTYRVGD++GYTEYQ QER RR+
Sbjct: 63  SCTTSSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERLRRI 118

[Close]

BLAST of Cp4.1LG11g06050 vs. NCBI nr
Match: gi|590580693|ref|XP_007014142.1| (Uncharacterized protein TCM_038892 [Theobroma cacao])

HSP 1 Score: 95.5 bits (236), Expect = 8.1e-17
Identity = 55/101 (54.46%), Postives = 73/101 (72.28%), Query Frame = 1


Query: 29  YSYSPPRKGIVEDKQVSSYEQSWRTHDRNRHTGTYTTASTKEVASRGETFKERSSGRVGS 88
           Y+Y   + G     Q S  + + +T   ++ TG+YT A+ KEV S GETFKERS+GRVG 
Sbjct: 29  YNYQSQQGG-----QSSCNQTTSKTSYVDKQTGSYTRATNKEVVSTGETFKERSTGRVGY 88

Query: 89  KDEFKTTSTYRVGDRNGYTEYQHQERFRRVDFGSGGSSSSR 130
           KDE+KTTSTY+VGD++GYTEYQ +ERFR V + SG SSS++
Sbjct: 89  KDEYKTTSTYKVGDKSGYTEYQVEERFRNVKY-SGNSSSNK 123

[Close]

BLAST of Cp4.1LG11g06050 vs. NCBI nr
Match: gi|802555198|ref|XP_012065303.1| (PREDICTED: uncharacterized protein LOC105628496 [Jatropha curcas])

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-15
Identity = 54/126 (42.86%), Postives = 78/126 (61.90%), Query Frame = 1


Query: 13  DQWGNGYQSYDD-----DLDDYSYSPPRKGIVED------KQVSSYEQSWRTHDRNRHTG 72
           D +G G  S DD     D D+ +Y    +G+  D      +Q +S +   +    ++ TG
Sbjct: 25  DSYGLGSDSEDDYNEKSDFDEDNYHSDSEGVGSDLEDNHLQQSNSQQSILKNSIVDKKTG 84

Query: 73  TYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRNGYTEYQHQERFRRVDFG 128
           +Y   + K+  S G+ FKERS+GRVG KDEFKTT T++VGD+ GYTE+Q +ER+RRVD+G
Sbjct: 85  SYARTTMKQSYSSGDVFKERSTGRVGYKDEFKTTKTFKVGDKRGYTEHQVEERYRRVDYG 144

[Close]

BLAST of Cp4.1LG11g06050 vs. NCBI nr
Match: gi|1000951849|ref|XP_015579087.1| (PREDICTED: uncharacterized protein LOC107261812 [Ricinus communis])

HSP 1 Score: 90.5 bits (223), Expect = 2.6e-15
Identity = 50/97 (51.55%), Postives = 65/97 (67.01%), Query Frame = 1


Query: 33  PPRKGIVEDKQVSSYEQSWRTHDRNRHTGTYTTASTKEVASRGETFKERSSGRVGSKDEF 92
           P  KGI    Q SS+E + +    N+ TG Y   + KE +S G+ FK R +GRVG KDE+
Sbjct: 109 PSYKGIAPS-QSSSHEWTTKNSIVNKQTGGYMRTTMKESSSTGDVFKGRFTGRVGYKDEY 168

Query: 93  KTTSTYRVGDRNGYTEYQHQERFRRVDFGSGGSSSSR 130
           KTTS++RVGD+NGY EYQ +ERFRRVD+G G  S  +
Sbjct: 169 KTTSSFRVGDKNGYFEYQKEERFRRVDYGKGSGSREK 204

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g06050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g06050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK69_CUCSA	1.8e-31	64.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G049910 PE=4 SV=1	[more]
A0A061GQI1_THECC	5.7e-17	54.46	Uncharacterized protein OS=Theobroma cacao GN=TCM_038892 PE=4 SV=1	[more]
A0A067L9C5_JATCU	1.1e-15	42.86	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23026 PE=4 SV=1	[more]
A0A067L5T5_JATCU	1.0e-13	48.89	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23029 PE=4 SV=1	[more]
A0A059CRC8_EUCGR	1.2e-11	44.79	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02392 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g06050 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g06050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069861\|ref\|XP_008452151.1\|	1.7e-35	67.97	PREDICTED: uncharacterized protein LOC103493252 [Cucumis melo]	[more]
gi\|700205983\|gb\|KGN61102.1\|	2.6e-31	64.96	hypothetical protein Csa_2G049910 [Cucumis sativus]	[more]
gi\|590580693\|ref\|XP_007014142.1\|	8.1e-17	54.46	Uncharacterized protein TCM_038892 [Theobroma cacao]	[more]
gi\|802555198\|ref\|XP_012065303.1\|	1.5e-15	42.86	PREDICTED: uncharacterized protein LOC105628496 [Jatropha curcas]	[more]
gi\|1000951849\|ref\|XP_015579087.1\|	2.6e-15	51.55	PREDICTED: uncharacterized protein LOC107261812 [Ricinus communis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006855	drug transmembrane transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0015297	antiporter activity
molecular_function	GO:0015238	drug transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g06050.1	Cp4.1LG11g06050.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g06050	CmaCh05G006740	Cucurbita maxima (Rimu)	cmacpeB766
Cp4.1LG11g06050	CmoCh05G007090	Cucurbita moschata (Rifu)	cmocpeB720
Cp4.1LG11g06050	Cla022851	Watermelon (97103) v1	cpewmB123
Cp4.1LG11g06050	Csa2G049910	Cucumber (Chinese Long) v2	cpecuB098
Cp4.1LG11g06050	MELO3C004079	Melon (DHL92) v3.5.1	cpemeB103
Cp4.1LG11g06050	ClCG11G012490	Watermelon (Charleston Gray)	cpewcgB099
Cp4.1LG11g06050	CSPI02G05680	Wild cucumber (PI 183967)	cpecpiB095
Cp4.1LG11g06050	Lsi11G007320	Bottle gourd (USVL1VR-Ls)	cpelsiB070
Cp4.1LG11g06050	MELO3C004079.2	Melon (DHL92) v3.6.1	cpemedB129
Cp4.1LG11g06050	CsaV3_2G008040	Cucumber (Chinese Long) v3	cpecucB0108
Cp4.1LG11g06050	Bhi06G001158	Wax gourd	cpewgoB0126
Cp4.1LG11g06050	CsGy2G005850	Cucumber (Gy14) v2	cgybcpeB164
Cp4.1LG11g06050	Carg08363	Silver-seed gourd	carcpeB0079

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g06050	Cucurbita pepo (Zucchini)	cpecpeB129
Cp4.1LG11g06050	Cucurbita pepo (Zucchini)	cpecpeB144
Cp4.1LG11g06050	Cucumber (Gy14) v1	cgycpeB0170
Cp4.1LG11g06050	Cucurbita maxima (Rimu)	cmacpeB110
Cp4.1LG11g06050	Cucurbita maxima (Rimu)	cmacpeB177
Cp4.1LG11g06050	Cucurbita moschata (Rifu)	cmocpeB086
Cp4.1LG11g06050	Cucurbita moschata (Rifu)	cmocpeB152
Cp4.1LG11g06050	Watermelon (Charleston Gray)	cpewcgB116
Cp4.1LG11g06050	Cucumber (Gy14) v2	cgybcpeB030