MELO3C004079 (gene) Melon (DHL92) v3.5.1

NameMELO3C004079
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGlycogen debranching enzyme
Locationchr5 : 22729486 .. 22731904 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCCTAACCCTCCGATTTCTCAGAAGCAGCCAAAACCAAAAGGTAAGAAACCCCACTGCCTCTTCTCTTCATTATTGCTTTATATTTTCTATTCCATGTTTAAAATATTAATTACTAACTTGCTTTCTTGTCGGCTAAACTGAGATCCTCATTTCATTTCCTTTATTATTCTACTTGTTTCATTGATTTTCGTGTTCCTGCTTTGTTCTTTTGTTCTTTGAATTTTCTTTTCCGCTGATCCTGATTTCATATGAAACGAAATGTTAAATATATTTACGTTAATGAGAATCAGCCATTTCCACGAAAATCCTGGTTTCTTGTGGCTGGAAATTTAATATTCAACGAAAATACCGCACATTCTTGTACTATATGCTTGCATGTGTTGTAGTAATAGAGTTTCCAGTGGACTTTTAAATAGTTTCTGATAATATATATTGAATATTGTATGATATAGAGCTGTTCTTTAAATCATTCTTTTGTACTTTATTGTTATTATTGTTTGTTGTATTTTTTGATCTCATGAACTGAGTATATCCTAGCCGAAGAGAGAGTAATGTATCGTGAAAGCTTGGTGTAAAACTGGACGTGGGTAAGATTATGGATTCTTGGACAAGGGAAAGTTGTCAAGGCGTTGGGGCTTTATTGGCGTCAACAAATCTTGAAAAGCATAAATTAATTACAATAATCCTGTAAATTAAAAGGATGAAATGGCTGGAGTTGCGTTTAGTACAAGCTTCTTGTATTTGGTAGATGAGGTTTAGTGACAGGTAGGCAACCAGGTTAGAGAAGTTGTGCTATGTTACATAGAAAGGAATCAAAAAACTATTGTCTCTTTAGAATTAGCTTTAACTTAGGCGGGAAAATGAACGGAGAAAATCAAGCTATAACACTGCTATAGTTGCAAAAAGTTCTTATAAAATCGACAATAAAGTAGAAATGTAGAGACTTTTAGATTTGAGTAATACCCTTTAGCATATCAGAAAAATTTTGTCTTTTTAAAATTGGATGGGACGGTCAAGGTGTTCATAAAAATCTCATTTCTAAAAAGGAATTTAATCGGATAATTAAATTTTTAAAGTGCATCAAATGCATATTAACATGAAAGTCAAGCTTAACAGATTTAGAAAGTGCATTCTTGTAAGAATAAACAAAAGGAGTGAAGGGACACAAACTATATGGTCACTAGAACCGATTGGAGACTTGTGTATAACCAACAATGATTTTTCTTTTGATAAAGCAACTAGTCTGGTATTTTTTGGTGAGCTGGTGTGTTCTAGCTTGGTAAATTAGTTATGCAATAGAAGTAACAAAGTCAAGAGGATTTACATCAGTGTAATTGATCTTCAAAAATTTTGTAATAGTGGAGGTGTAGATCTAATTGCACTGTGGATGCGGACCACATGCAGCTGAACCACTTAAATCCTTGTTCTTATTCACTCTGCTCTTGATTGTGTATTGTCTTTCTTGATTTCAGAACAATAATTAGTGTAACAAGTTAATGCAAACTTTTGACATGCCATTACGTATTATTTGAAATTTTTCATGTATGCTCAACTCAGGAGTTCAATTCCACTTGGGCACATTTACCTTTTTCTCTCTCTTTTAAATTCAACTTCAGAATGAGTTTGCCATACACCTGATTTCACCATAAGCAATTTCTTATAATATCAAGAATGAAATTATATATCTGGACCTTGGTTAATTATGTTATTAATCCTTGCTTTTGGTTGTGGTAGAAAACACAGCAATGTCAAAGCAGGTTGGTCGTTACGATGGTGGGTACCAGAACTATGACTACGATTATTCGGATGACTATTCATACAATCAAGGACCAGAAGTTCAGGCAACAATTGGATATCTTGAGGTTGTGGAGGACAACAACCAGATGAGCAGCTACGAACAAAGTTGGAGGACTCATGATCGTAATAGGCAAACTGGAAGCTATACGACCACCTCAACAAAGGCGGTTGCTTCCCGTGGTGAAACCTTCAAAGAAAGATCAACTGGGAGAGTTGGCGCCAAGGACGAGTTCAAAACCACGTCCACGTACAGGGTTGGAGACAAAAGTGGATATACTGAGTATCAGTGTCAAGAGAGGTTCCGCCGAGTTGATTTCGGCGGAAGCAGCAGTGGATCTGGTAGTAAGGGGGGAAAGGGCAACAAATATCTCAAATGAAGGGGTGTGGTAACTATATGATGATTGGCTCTCTTGCTTAGAAGAATGTAGTTATTTTTGTGCAGACTTCGGTTGGTGTTAATATGATGGTTTCTGATGGTCTGAACTTTGGGTGTTGGACGATAGATCTAAGAGGGCCCTTTTGTTGGTCTGTTTTGGTTGTGCTTGTAAATGCTCTAATAGGTTTAGAGAGATGAATTAAATTCCAAAAACCAAAAAGTAAATGGTATCTCGTTTTGTTG

mRNA sequence

AACCCTAACCCTCCGATTTCTCAGAAGCAGCCAAAACCAAAAGAAAACACAGCAATGTCAAAGCAGGTTGGTCGTTACGATGGTGGGTACCAGAACTATGACTACGATTATTCGGATGACTATTCATACAATCAAGGACCAGAAGTTCAGGCAACAATTGGATATCTTGAGGTTGTGGAGGACAACAACCAGATGAGCAGCTACGAACAAAGTTGGAGGACTCATGATCGTAATAGGCAAACTGGAAGCTATACGACCACCTCAACAAAGGCGGTTGCTTCCCGTGGTGAAACCTTCAAAGAAAGATCAACTGGGAGAGTTGGCGCCAAGGACGAGTTCAAAACCACGTCCACGTACAGGGTTGGAGACAAAAGTGGATATACTGAGTATCAGTGTCAAGAGAGGTTCCGCCGAGTTGATTTCGGCGGAAGCAGCAGTGGATCTGGTAGTAAGGGGGGAAAGGGCAACAAATATCTCAAATGAAGGGGTGTGGTAACTATATGATGATTGGCTCTCTTGCTTAGAAGAATGTAGTTATTTTTGTGCAGACTTCGGTTGGTGTTAATATGATGGTTTCTGATGGTCTGAACTTTGGGTGTTGGACGATAGATCTAAGAGGGCCCTTTTGTTGGTCTGTTTTGGTTGTGCTTGTAAATGCTCTAATAGGTTTAGAGAGATGAATTAAATTCCAAAAACCAAAAAGTAAATGGTATCTCGTTTTGTTG

Coding sequence (CDS)

ATGTCAAAGCAGGTTGGTCGTTACGATGGTGGGTACCAGAACTATGACTACGATTATTCGGATGACTATTCATACAATCAAGGACCAGAAGTTCAGGCAACAATTGGATATCTTGAGGTTGTGGAGGACAACAACCAGATGAGCAGCTACGAACAAAGTTGGAGGACTCATGATCGTAATAGGCAAACTGGAAGCTATACGACCACCTCAACAAAGGCGGTTGCTTCCCGTGGTGAAACCTTCAAAGAAAGATCAACTGGGAGAGTTGGCGCCAAGGACGAGTTCAAAACCACGTCCACGTACAGGGTTGGAGACAAAAGTGGATATACTGAGTATCAGTGTCAAGAGAGGTTCCGCCGAGTTGATTTCGGCGGAAGCAGCAGTGGATCTGGTAGTAAGGGGGGAAAGGGCAACAAATATCTCAAATGA

Protein sequence

MSKQVGRYDGGYQNYDYDYSDDYSYNQGPEVQATIGYLEVVEDNNQMSSYEQSWRTHDRNRQTGSYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERFRRVDFGGSSSGSGSKGGKGNKYLK*
BLAST of MELO3C004079 vs. TrEMBL
Match: A0A0A0LK69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G049910 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 6.7e-55
Identity = 109/121 (90.08%), Postives = 114/121 (94.21%), Query Frame = 1

Query: 1   MSKQVGRYDGGYQNYDYDYSDDYSYNQGPEVQATIGYLEVVEDNNQMSSYEQSWRTHDRN 60
           MSKQVG YDGGYQNYDY  S+DYSYNQG EVQATIGY+EV+EDN QMSSYEQSWRTHDRN
Sbjct: 1   MSKQVGHYDGGYQNYDY--SNDYSYNQGQEVQATIGYIEVIEDN-QMSSYEQSWRTHDRN 60

Query: 61  RQTGSYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERFRR 120
           RQTGS TT+STKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQER RR
Sbjct: 61  RQTGSCTTSSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERLRR 118

Query: 121 V 122
           +
Sbjct: 121 I 118

BLAST of MELO3C004079 vs. TrEMBL
Match: A0A061GQI1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038892 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.6e-24
Identity = 62/111 (55.86%), Postives = 76/111 (68.47%), Query Frame = 1

Query: 34  TIGYLEVVEDNNQMSSYEQSWRTHDRNRQTGSYTTTSTKAVASRGETFKERSTGRVGAKD 93
           T  Y    +   Q S  + + +T   ++QTGSYT  + K V S GETFKERSTGRVG KD
Sbjct: 26  TSSYNYQSQQGGQSSCNQTTSKTSYVDKQTGSYTRATNKEVVSTGETFKERSTGRVGYKD 85

Query: 94  EFKTTSTYRVGDKSGYTEYQCQERFRRVDFGGSSSGS--GSKGGKGNKYLK 143
           E+KTTSTY+VGDKSGYTEYQ +ERFR V + G+SS +   + GG  NKYLK
Sbjct: 86  EYKTTSTYKVGDKSGYTEYQVEERFRNVKYSGNSSSNKGNNSGGWNNKYLK 136

BLAST of MELO3C004079 vs. TrEMBL
Match: A0A067L9C5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23026 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.0e-20
Identity = 57/118 (48.31%), Postives = 79/118 (66.95%), Query Frame = 1

Query: 18  DYSDDYSYNQGPEVQATIGYLEVVEDNN-QMSSYEQS-WRTHDRNRQTGSYTTTSTKAVA 77
           DY++   +++      + G    +EDN+ Q S+ +QS  +    +++TGSY  T+ K   
Sbjct: 36  DYNEKSDFDEDNYHSDSEGVGSDLEDNHLQQSNSQQSILKNSIVDKKTGSYARTTMKQSY 95

Query: 78  SRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERFRRVDFGGSSSGSGSK 134
           S G+ FKERSTGRVG KDEFKTT T++VGDK GYTE+Q +ER+RRVD+G SSS S  K
Sbjct: 96  SSGDVFKERSTGRVGYKDEFKTTKTFKVGDKRGYTEHQVEERYRRVDYGNSSSSSRGK 153

BLAST of MELO3C004079 vs. TrEMBL
Match: A0A067L5T5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23029 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.5e-19
Identity = 54/96 (56.25%), Postives = 66/96 (68.75%), Query Frame = 1

Query: 49  SYEQSWRTHDR--NRQTGSYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDK 108
           S  Q W + +   ++QTGSY  T+ K   S G+ FKERSTGRVG KDE KTTST++VGDK
Sbjct: 41  SNSQQWISRNSIVDKQTGSYAKTTVKQSYSSGDVFKERSTGRVGHKDELKTTSTFKVGDK 100

Query: 109 SGYTEYQCQERFRRVDFGGSSSGSGSKGGKGNKYLK 143
           SGY EYQ +ERFR+VD+G SSS +        KYLK
Sbjct: 101 SGYYEYQVEERFRKVDYGNSSSSN-------KKYLK 129

BLAST of MELO3C004079 vs. TrEMBL
Match: A0A059CRC8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02392 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.2e-15
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 1

Query: 47  MSSYEQSWRTHDRNRQTGSYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDK 106
           ++SYE S RT  +++QTG Y   + K   + G+T KERS GRVG KDE++ ++T  +GDK
Sbjct: 130 VTSYEWSLRTRHQDKQTGDYARATVKQTFASGDTIKERSKGRVGFKDEYEQSTTITIGDK 189

Query: 107 SGYTEYQCQERFRRVDFGGSS-SGSGSKGGKG 138
            GY+EY+ ++R R V++G SS  GSG     G
Sbjct: 190 GGYSEYRVEKRLRTVEYGKSSGKGSGDSSSSG 221

BLAST of MELO3C004079 vs. NCBI nr
Match: gi|659069861|ref|XP_008452151.1| (PREDICTED: uncharacterized protein LOC103493252 [Cucumis melo])

HSP 1 Score: 297.0 bits (759), Expect = 1.8e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1

Query: 1   MSKQVGRYDGGYQNYDYDYSDDYSYNQGPEVQATIGYLEVVEDNNQMSSYEQSWRTHDRN 60
           MSKQVGRYDGGYQNYDYDYSDDYSYNQGPEVQATIGYLEVVEDNNQMSSYEQSWRTHDRN
Sbjct: 1   MSKQVGRYDGGYQNYDYDYSDDYSYNQGPEVQATIGYLEVVEDNNQMSSYEQSWRTHDRN 60

Query: 61  RQTGSYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERFRR 120
           RQTGSYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERFRR
Sbjct: 61  RQTGSYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERFRR 120

Query: 121 VDFGGSSSGSGSKGGKGNKYLK 143
           VDFGGSSSGSGSKGGKGNKYLK
Sbjct: 121 VDFGGSSSGSGSKGGKGNKYLK 142

BLAST of MELO3C004079 vs. NCBI nr
Match: gi|700205983|gb|KGN61102.1| (hypothetical protein Csa_2G049910 [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 9.6e-55
Identity = 109/121 (90.08%), Postives = 114/121 (94.21%), Query Frame = 1

Query: 1   MSKQVGRYDGGYQNYDYDYSDDYSYNQGPEVQATIGYLEVVEDNNQMSSYEQSWRTHDRN 60
           MSKQVG YDGGYQNYDY  S+DYSYNQG EVQATIGY+EV+EDN QMSSYEQSWRTHDRN
Sbjct: 1   MSKQVGHYDGGYQNYDY--SNDYSYNQGQEVQATIGYIEVIEDN-QMSSYEQSWRTHDRN 60

Query: 61  RQTGSYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERFRR 120
           RQTGS TT+STKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQER RR
Sbjct: 61  RQTGSCTTSSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERLRR 118

Query: 121 V 122
           +
Sbjct: 121 I 118

BLAST of MELO3C004079 vs. NCBI nr
Match: gi|590580693|ref|XP_007014142.1| (Uncharacterized protein TCM_038892 [Theobroma cacao])

HSP 1 Score: 119.4 bits (298), Expect = 5.1e-24
Identity = 62/111 (55.86%), Postives = 76/111 (68.47%), Query Frame = 1

Query: 34  TIGYLEVVEDNNQMSSYEQSWRTHDRNRQTGSYTTTSTKAVASRGETFKERSTGRVGAKD 93
           T  Y    +   Q S  + + +T   ++QTGSYT  + K V S GETFKERSTGRVG KD
Sbjct: 26  TSSYNYQSQQGGQSSCNQTTSKTSYVDKQTGSYTRATNKEVVSTGETFKERSTGRVGYKD 85

Query: 94  EFKTTSTYRVGDKSGYTEYQCQERFRRVDFGGSSSGS--GSKGGKGNKYLK 143
           E+KTTSTY+VGDKSGYTEYQ +ERFR V + G+SS +   + GG  NKYLK
Sbjct: 86  EYKTTSTYKVGDKSGYTEYQVEERFRNVKYSGNSSSNKGNNSGGWNNKYLK 136

BLAST of MELO3C004079 vs. NCBI nr
Match: gi|1000951849|ref|XP_015579087.1| (PREDICTED: uncharacterized protein LOC107261812 [Ricinus communis])

HSP 1 Score: 107.1 bits (266), Expect = 2.6e-20
Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 1

Query: 45  NQMSSYEQSWRTHDRNRQTGSYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVG 104
           +Q SS+E + +    N+QTG Y  T+ K  +S G+ FK R TGRVG KDE+KTTS++RVG
Sbjct: 117 SQSSSHEWTTKNSIVNKQTGGYMRTTMKESSSTGDVFKGRFTGRVGYKDEYKTTSSFRVG 176

Query: 105 DKSGYTEYQCQERFRRVDFG-GSSSGSGSKGGKGNKYLK 143
           DK+GY EYQ +ERFRRVD+G GS S   S     NKYLK
Sbjct: 177 DKNGYFEYQKEERFRRVDYGKGSGSREKSSNSSSNKYLK 215

BLAST of MELO3C004079 vs. NCBI nr
Match: gi|802555198|ref|XP_012065303.1| (PREDICTED: uncharacterized protein LOC105628496 [Jatropha curcas])

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-19
Identity = 57/118 (48.31%), Postives = 79/118 (66.95%), Query Frame = 1

Query: 18  DYSDDYSYNQGPEVQATIGYLEVVEDNN-QMSSYEQS-WRTHDRNRQTGSYTTTSTKAVA 77
           DY++   +++      + G    +EDN+ Q S+ +QS  +    +++TGSY  T+ K   
Sbjct: 36  DYNEKSDFDEDNYHSDSEGVGSDLEDNHLQQSNSQQSILKNSIVDKKTGSYARTTMKQSY 95

Query: 78  SRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERFRRVDFGGSSSGSGSK 134
           S G+ FKERSTGRVG KDEFKTT T++VGDK GYTE+Q +ER+RRVD+G SSS S  K
Sbjct: 96  SSGDVFKERSTGRVGYKDEFKTTKTFKVGDKRGYTEHQVEERYRRVDYGNSSSSSRGK 153

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LK69_CUCSA6.7e-5590.08Uncharacterized protein OS=Cucumis sativus GN=Csa_2G049910 PE=4 SV=1[more]
A0A061GQI1_THECC3.6e-2455.86Uncharacterized protein OS=Theobroma cacao GN=TCM_038892 PE=4 SV=1[more]
A0A067L9C5_JATCU7.0e-2048.31Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23026 PE=4 SV=1[more]
A0A067L5T5_JATCU3.5e-1956.25Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23029 PE=4 SV=1[more]
A0A059CRC8_EUCGR5.2e-1545.65Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02392 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659069861|ref|XP_008452151.1|1.8e-77100.00PREDICTED: uncharacterized protein LOC103493252 [Cucumis melo][more]
gi|700205983|gb|KGN61102.1|9.6e-5590.08hypothetical protein Csa_2G049910 [Cucumis sativus][more]
gi|590580693|ref|XP_007014142.1|5.1e-2455.86Uncharacterized protein TCM_038892 [Theobroma cacao][more]
gi|1000951849|ref|XP_015579087.1|2.6e-2055.56PREDICTED: uncharacterized protein LOC107261812 [Ricinus communis][more]
gi|802555198|ref|XP_012065303.1|1.0e-1948.31PREDICTED: uncharacterized protein LOC105628496 [Jatropha curcas][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU61043melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004079T1MELO3C004079T1mRNA
MELO3C004079T2MELO3C004079T2mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU61043MU61043transcribed_cluster


The following gene(s) are paralogous to this gene:

None