CmoCh05G007090 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G007090
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr05 : 3632740 .. 3633729 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTTCTTGTTGCTGGGTATTTCATGCACTACAAAAGGATATCACACATTCCTAGACTATGCTTGCATGGGTTGTGGTAATAGAGCTTTAAGTGACCTTTTTAACTTCTGATTCTCATATTGAATATCCTAGTAACGTTTGCTTGAAGCTGTTTGTTCTCTCTTTCGAATCTATTGCTATTTTTTATGTGGGATGATTGAAACACTTATAAGCGATATCTTGTAGTTTCAACTATGAAATCTGGTTAGTTTTGTTTGTGGTGGTAGAAAAACGCAGCTATGTCAGGAAAGCAGCTAGATCAATGGGGGAATGGGTACCAAAGTTACGACGATGATTTGGACGACTACTCGTACAGTCCTCCATTGCAAGGGAATGTACAAGTGGCAAGAATAGGATATGTGGGTGTTGTTAGTGCAGAAGTCAAACAAGTGAGCAGCTATGAACAAAGTTGGAGGACTCACGATCGCAACAGGCAAACTGGAAGCTATACGACCGCTTCAACAAAGGAGGTTGCTTCTCGTGGTGAAACATTCAAGGAGAGGTCAAGTGGGAGAGTTGGGTCGAAGGATGAGTTCAAAACCACCTCCACTTACAGGGTTGGTGACCGAAGTGGATATACCGAGTATCAGCGTCAAGAGAGGTTCCGGCGTGTTGATTTTGGCAGCGGCGGCAGCAGCAGCAACAGCATAAGAGGATCAGCGGGTAGTAAGGGGGGTAAGTAATGCAGCAATGCTGCATGCTTGTATGTCTGGCTGTCTCTCTTGACTAGAATTTGGTAGCTGGAACTTGGGTTTGTGGTGTCCCTTTTGTGCAGACTTGCGCTTTGATATGCTGTTTTCTGCCGTAGAAAATAAGATGGAAGAGAGAGGCTTTTGTTGTTTTTTGGTGTTTGTAATGCTCTGATAGGTTTAGAGAGCTGAATTGAATTTCAGGTATGTTGATCATCTGTTTGAATATTAGTGTCAAAACTAATCGTCTTTTTTAA

mRNA sequence

ATGGCGAAAAACGCAGCTATGTCAGGAAAGCAGCTAGATCAATGGGGGAATGGGTACCAAAGTTACGACGATGATTTGGACGACTACTCGTACAGTCCTCCATTGCAAGGGAATGTACAAGTGGCAAGAATAGGATATGTGGGTGTTGTTAGTGCAGAAGTCAAACAAGTGAGCAGCTATGAACAAAGTTGGAGGACTCACGATCGCAACAGGCAAACTGGAAGCTATACGACCGCTTCAACAAAGGAGGTTGCTTCTCGTGGTGAAACATTCAAGGAGAGGTCAAGTGGGAGAGTTGGGTCGAAGGATGAGTTCAAAACCACCTCCACTTACAGGGTTGGTGACCGAAGTGGATATACCGAGTATCAGCGTCAAGAGAGGTTCCGGCGTGTTGATTTTGGCAGCGGCGGCAGCAGCAGCAACAGCATAAGAGGATCAGCGGGTAGTAAGGGGGGTATGTTGATCATCTGTTTGAATATTAGTGTCAAAACTAATCGTCTTTTTTAA

Coding sequence (CDS)

ATGGCGAAAAACGCAGCTATGTCAGGAAAGCAGCTAGATCAATGGGGGAATGGGTACCAAAGTTACGACGATGATTTGGACGACTACTCGTACAGTCCTCCATTGCAAGGGAATGTACAAGTGGCAAGAATAGGATATGTGGGTGTTGTTAGTGCAGAAGTCAAACAAGTGAGCAGCTATGAACAAAGTTGGAGGACTCACGATCGCAACAGGCAAACTGGAAGCTATACGACCGCTTCAACAAAGGAGGTTGCTTCTCGTGGTGAAACATTCAAGGAGAGGTCAAGTGGGAGAGTTGGGTCGAAGGATGAGTTCAAAACCACCTCCACTTACAGGGTTGGTGACCGAAGTGGATATACCGAGTATCAGCGTCAAGAGAGGTTCCGGCGTGTTGATTTTGGCAGCGGCGGCAGCAGCAGCAACAGCATAAGAGGATCAGCGGGTAGTAAGGGGGGTATGTTGATCATCTGTTTGAATATTAGTGTCAAAACTAATCGTCTTTTTTAA

Homology

[Close]

BLAST of CmoCh05G007090 vs. TrEMBL
Match: A0A0A0LK69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G049910 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.0e-34
Identity = 85/122 (69.67%), Postives = 98/122 (80.33%), Query Frame = 1


Query: 10  KQLDQWGNGYQSYDDDLDDYSYSPPLQGNVQVARIGYVGVVSAEVKQVSSYEQSWRTHDR 69
           KQ+  +  GYQ+YD   +DYSY+   QG    A IGY+ V+  E  Q+SSYEQSWRTHDR
Sbjct: 3   KQVGHYDGGYQNYDYS-NDYSYN---QGQEVQATIGYIEVI--EDNQMSSYEQSWRTHDR 62

Query: 70  NRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRSGYTEYQRQERFR 129
           NRQTGS TT+STK VASRGETFKERS+GRVG+KDEFKTTSTYRVGD+SGYTEYQ QER R
Sbjct: 63  NRQTGSCTTSSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERLR 118

Query: 130 RV 132
           R+
Sbjct: 123 RI 118

[Close]

BLAST of CmoCh05G007090 vs. TrEMBL
Match: A0A061GQI1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038892 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.1e-19
Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = 1


Query: 56  QVSSYEQSWRTHDRNRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGD 115
           Q S  + + +T   ++QTGSYT A+ KEV S GETFKERS+GRVG KDE+KTTSTY+VGD
Sbjct: 38  QSSCNQTTSKTSYVDKQTGSYTRATNKEVVSTGETFKERSTGRVGYKDEYKTTSTYKVGD 97

Query: 116 RSGYTEYQRQERFRRVDFGSGGSSSNSIRGSAG 149
           +SGYTEYQ +ERFR V + SG SSSN    S G
Sbjct: 98  KSGYTEYQVEERFRNVKY-SGNSSSNKGNNSGG 129

[Close]

BLAST of CmoCh05G007090 vs. TrEMBL
Match: A0A067L9C5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23026 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-15
Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = 1


Query: 13  DQWGNGYQSYDD-----DLDDYSYSPPLQGNVQVARIGYVGVVSAEVKQVSSYEQSWRTH 72
           D +G G  S DD     D D+ +Y    +G      +G   +    ++Q +S +   +  
Sbjct: 25  DSYGLGSDSEDDYNEKSDFDEDNYHSDSEG------VGS-DLEDNHLQQSNSQQSILKNS 84

Query: 73  DRNRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRSGYTEYQRQER 132
             +++TGSY   + K+  S G+ FKERS+GRVG KDEFKTT T++VGD+ GYTE+Q +ER
Sbjct: 85  IVDKKTGSYARTTMKQSYSSGDVFKERSTGRVGYKDEFKTTKTFKVGDKRGYTEHQVEER 144

Query: 133 FRRVDFGSGGSSSNSIRGSAGSKG 152
           +RRVD+G+  SSS        SKG
Sbjct: 145 YRRVDYGNSSSSSRGKNSCCNSKG 161

[Close]

BLAST of CmoCh05G007090 vs. TrEMBL
Match: A0A067L5T5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23029 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = 1


Query: 55  KQVSSYEQSWRTHDR--NRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYR 114
           K   S  Q W + +   ++QTGSY   + K+  S G+ FKERS+GRVG KDE KTTST++
Sbjct: 37  KGQQSNSQQWISRNSIVDKQTGSYAKTTVKQSYSSGDVFKERSTGRVGHKDELKTTSTFK 96

Query: 115 VGDRSGYTEYQRQERFRRVDFGSGGSSS 141
           VGD+SGY EYQ +ERFR+VD+G+  SS+
Sbjct: 97  VGDKSGYYEYQVEERFRKVDYGNSSSSN 124

[Close]

BLAST of CmoCh05G007090 vs. TrEMBL
Match: A0A059CRC8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02392 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.2e-12
Identity = 48/131 (36.64%), Postives = 74/131 (56.49%), Query Frame = 1


Query: 34  PLQGNVQVARIGYVGVVSAEVK---QVSSYEQSWRTHDRNRQTGSYTTASTKEVASRGET 93
           P Q   Q    G +G  S   +    V+SYE S RT  +++QTG Y  A+ K+  + G+T
Sbjct: 104 PGQDGPQQTMTGSIGKQSGVNRGRHPVTSYEWSLRTRHQDKQTGDYARATVKQTFASGDT 163

Query: 94  FKERSSGRVGSKDEFKTTSTYRVGDRSGYTEYQRQERFRRVDFGSGGSSSNSIRGSAGSK 153
            KERS GRVG KDE++ ++T  +GD+ GY+EY+ ++R R V++G      +    S+G +
Sbjct: 164 IKERSKGRVGFKDEYEQSTTITIGDKGGYSEYRVEKRLRTVEYGKSSGKGSGDSSSSGYQ 223

Query: 154 GGMLIICLNIS 162
              L I +  S
Sbjct: 224 QEELRIIMTSS 234

[Close]

BLAST of CmoCh05G007090 vs. NCBI nr
Match: gi|659069861|ref|XP_008452151.1| (PREDICTED: uncharacterized protein LOC103493252 [Cucumis melo])

HSP 1 Score: 174.9 bits (442), Expect = 1.2e-40
Identity = 103/143 (72.03%), Postives = 114/143 (79.72%), Query Frame = 1


Query: 10  KQLDQWGNGYQSYDDDL-DDYSYSPPLQGNVQVARIGYVGVVSAEVKQVSSYEQSWRTHD 69
           KQ+ ++  GYQ+YD D  DDYSY+   QG    A IGY+ VV  +  Q+SSYEQSWRTHD
Sbjct: 3   KQVGRYDGGYQNYDYDYSDDYSYN---QGPEVQATIGYLEVVE-DNNQMSSYEQSWRTHD 62

Query: 70  RNRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRSGYTEYQRQERF 129
           RNRQTGSYTT STK VASRGETFKERS+GRVG+KDEFKTTSTYRVGD+SGYTEYQ QERF
Sbjct: 63  RNRQTGSYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERF 122

Query: 130 RRVDFGSGGSSSNSIRGSAGSKG 152
           RRVDF  GGSSS S  GS G KG
Sbjct: 123 RRVDF--GGSSSGS--GSKGGKG 137

[Close]

BLAST of CmoCh05G007090 vs. NCBI nr
Match: gi|700205983|gb|KGN61102.1| (hypothetical protein Csa_2G049910 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 2.9e-34
Identity = 85/122 (69.67%), Postives = 98/122 (80.33%), Query Frame = 1


Query: 10  KQLDQWGNGYQSYDDDLDDYSYSPPLQGNVQVARIGYVGVVSAEVKQVSSYEQSWRTHDR 69
           KQ+  +  GYQ+YD   +DYSY+   QG    A IGY+ V+  E  Q+SSYEQSWRTHDR
Sbjct: 3   KQVGHYDGGYQNYDYS-NDYSYN---QGQEVQATIGYIEVI--EDNQMSSYEQSWRTHDR 62

Query: 70  NRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRSGYTEYQRQERFR 129
           NRQTGS TT+STK VASRGETFKERS+GRVG+KDEFKTTSTYRVGD+SGYTEYQ QER R
Sbjct: 63  NRQTGSCTTSSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERLR 118

Query: 130 RV 132
           R+
Sbjct: 123 RI 118

[Close]

BLAST of CmoCh05G007090 vs. NCBI nr
Match: gi|590580693|ref|XP_007014142.1| (Uncharacterized protein TCM_038892 [Theobroma cacao])

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-18
Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = 1


Query: 56  QVSSYEQSWRTHDRNRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGD 115
           Q S  + + +T   ++QTGSYT A+ KEV S GETFKERS+GRVG KDE+KTTSTY+VGD
Sbjct: 38  QSSCNQTTSKTSYVDKQTGSYTRATNKEVVSTGETFKERSTGRVGYKDEYKTTSTYKVGD 97

Query: 116 RSGYTEYQRQERFRRVDFGSGGSSSNSIRGSAG 149
           +SGYTEYQ +ERFR V + SG SSSN    S G
Sbjct: 98  KSGYTEYQVEERFRNVKY-SGNSSSNKGNNSGG 129

[Close]

BLAST of CmoCh05G007090 vs. NCBI nr
Match: gi|1000951849|ref|XP_015579087.1| (PREDICTED: uncharacterized protein LOC107261812 [Ricinus communis])

HSP 1 Score: 90.9 bits (224), Expect = 2.3e-15
Identity = 58/144 (40.28%), Postives = 83/144 (57.64%), Query Frame = 1


Query: 9   GKQLDQWGNGYQSYDDDLDDYSYSP--PLQGNVQVARIGYVGVVSAEVKQVSSYEQSWRT 68
           G   +  GN   SY +     S S   P +     ++  Y G+  +   Q SS+E + + 
Sbjct: 72  GTTKNHGGNSKSSYSNIAPRQSNSNQGPTKNYGGNSKPSYKGIAPS---QSSSHEWTTKN 131

Query: 69  HDRNRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRSGYTEYQRQE 128
              N+QTG Y   + KE +S G+ FK R +GRVG KDE+KTTS++RVGD++GY EYQ++E
Sbjct: 132 SIVNKQTGGYMRTTMKESSSTGDVFKGRFTGRVGYKDEYKTTSSFRVGDKNGYFEYQKEE 191

Query: 129 RFRRVDFGSGGSSSNSIRGSAGSK 151
           RFRRVD+G G  S      S+ +K
Sbjct: 192 RFRRVDYGKGSGSREKSSNSSSNK 212

[Close]

BLAST of CmoCh05G007090 vs. NCBI nr
Match: gi|802555198|ref|XP_012065303.1| (PREDICTED: uncharacterized protein LOC105628496 [Jatropha curcas])

HSP 1 Score: 90.5 bits (223), Expect = 3.0e-15
Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = 1


Query: 13  DQWGNGYQSYDD-----DLDDYSYSPPLQGNVQVARIGYVGVVSAEVKQVSSYEQSWRTH 72
           D +G G  S DD     D D+ +Y    +G      +G   +    ++Q +S +   +  
Sbjct: 25  DSYGLGSDSEDDYNEKSDFDEDNYHSDSEG------VGS-DLEDNHLQQSNSQQSILKNS 84

Query: 73  DRNRQTGSYTTASTKEVASRGETFKERSSGRVGSKDEFKTTSTYRVGDRSGYTEYQRQER 132
             +++TGSY   + K+  S G+ FKERS+GRVG KDEFKTT T++VGD+ GYTE+Q +ER
Sbjct: 85  IVDKKTGSYARTTMKQSYSSGDVFKERSTGRVGYKDEFKTTKTFKVGDKRGYTEHQVEER 144

Query: 133 FRRVDFGSGGSSSNSIRGSAGSKG 152
           +RRVD+G+  SSS        SKG
Sbjct: 145 YRRVDYGNSSSSSRGKNSCCNSKG 161

The following BLAST results are available for this feature:

BLAST of CmoCh05G007090 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G007090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK69_CUCSA	2.0e-34	69.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G049910 PE=4 SV=1	[more]
A0A061GQI1_THECC	9.1e-19	62.37	Uncharacterized protein OS=Theobroma cacao GN=TCM_038892 PE=4 SV=1	[more]
A0A067L9C5_JATCU	2.1e-15	40.28	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23026 PE=4 SV=1	[more]
A0A067L5T5_JATCU	1.4e-14	53.41	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23029 PE=4 SV=1	[more]
A0A059CRC8_EUCGR	8.2e-12	36.64	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02392 PE=4 SV=1	[more]

BLAST of CmoCh05G007090 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh05G007090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069861\|ref\|XP_008452151.1\|	1.2e-40	72.03	PREDICTED: uncharacterized protein LOC103493252 [Cucumis melo]	[more]
gi\|700205983\|gb\|KGN61102.1\|	2.9e-34	69.67	hypothetical protein Csa_2G049910 [Cucumis sativus]	[more]
gi\|590580693\|ref\|XP_007014142.1\|	1.3e-18	62.37	Uncharacterized protein TCM_038892 [Theobroma cacao]	[more]
gi\|1000951849\|ref\|XP_015579087.1\|	2.3e-15	40.28	PREDICTED: uncharacterized protein LOC107261812 [Ricinus communis]	[more]
gi\|802555198\|ref\|XP_012065303.1\|	3.0e-15	40.28	PREDICTED: uncharacterized protein LOC105628496 [Jatropha curcas]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006855	drug transmembrane transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0015297	antiporter activity
molecular_function	GO:0015238	drug transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G007090.1	CmoCh05G007090.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G007090	CmaCh05G006740	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G007090	Cla022851	Watermelon (97103) v1	cmowmB764
CmoCh05G007090	Csa2G049910	Cucumber (Chinese Long) v2	cmocuB779
CmoCh05G007090	MELO3C004079	Melon (DHL92) v3.5.1	cmomeB725
CmoCh05G007090	ClCG11G012490	Watermelon (Charleston Gray)	cmowcgB696
CmoCh05G007090	CSPI02G05680	Wild cucumber (PI 183967)	cmocpiB784
CmoCh05G007090	Lsi11G007320	Bottle gourd (USVL1VR-Ls)	cmolsiB703
CmoCh05G007090	Cp4.1LG11g06050	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G007090	MELO3C004079.2	Melon (DHL92) v3.6.1	cmomedB822
CmoCh05G007090	CsaV3_2G008040	Cucumber (Chinese Long) v3	cmocucB0920
CmoCh05G007090	Cla97C11G218330	Watermelon (97103) v2	cmowmbB784
CmoCh05G007090	Bhi06G001158	Wax gourd	cmowgoB0927
CmoCh05G007090	CsGy2G005850	Cucumber (Gy14) v2	cgybcmoB240
CmoCh05G007090	Carg08363	Silver-seed gourd	carcmoB0087

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G007090	Melon (DHL92) v3.6.1	cmomedB807
CmoCh05G007090	Cucumber (Chinese Long) v3	cmocucB0912
CmoCh05G007090	Watermelon (97103) v2	cmowmbB795
CmoCh05G007090	Watermelon (97103) v2	cmowmbB799
CmoCh05G007090	Wax gourd	cmowgoB0969
CmoCh05G007090	Cucurbita moschata (Rifu)	cmocmoB076
CmoCh05G007090	Cucurbita moschata (Rifu)	cmocmoB128
CmoCh05G007090	Cucurbita moschata (Rifu)	cmocmoB154
CmoCh05G007090	Cucumber (Gy14) v1	cgycmoB0180
CmoCh05G007090	Cucurbita maxima (Rimu)	cmacmoB096
CmoCh05G007090	Cucurbita maxima (Rimu)	cmacmoB160
CmoCh05G007090	Cucurbita maxima (Rimu)	cmacmoB196
CmoCh05G007090	Wild cucumber (PI 183967)	cmocpiB779
CmoCh05G007090	Cucumber (Chinese Long) v2	cmocuB772
CmoCh05G007090	Melon (DHL92) v3.5.1	cmomeB711
CmoCh05G007090	Watermelon (Charleston Gray)	cmowcgB709
CmoCh05G007090	Watermelon (97103) v1	cmowmB766
CmoCh05G007090	Cucurbita pepo (Zucchini)	cmocpeB729
CmoCh05G007090	Cucurbita pepo (Zucchini)	cmocpeB736
CmoCh05G007090	Cucurbita pepo (Zucchini)	cmocpeB749
CmoCh05G007090	Cucumber (Gy14) v2	cgybcmoB126