Cp4.1LG11g02750 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g02750
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Complex 1 LYR protein
Location	Cp4.1LG11 : 1467133 .. 1469141 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTACCCTTCCGATTCTCCCTTTTCCCTGTTCTTGCGAACTCTTCCCTTTCTTCGTGTGTCAGCTGAATCCTCAAGTTTACGCGCCTTCAAAGACGCTTGATCCTGTTCCTTCCAGCTTATCTCTATCAATCGTCCCTCCCCTCAATCTTCTTCGCCTGGCTGCTTCGAGGTTTGTTCGTGAATTTTCATTTTCCTTTGAGATTCTGTTGTGTTAGGGTTGCTGAAATCACGATTAGATTATTTTTGTGTTATTGTTCGCTATATCTCTCTCACTGTTCCCAAATGTTGTTCCAGAGTCATCTATCATAGATTAATTAGCATTGAATGTACATGTTCTTCCAGCATGAGAATGGATTGAGGATTTGATGATTGTAATTGCTGTTTTGTTTATTACTTATGCACATTTGTGAAAAACTGGCGTTTATCACTTTATTCTAGGCTGAGTACGGTGGATTTGACCTATGGAAGCTGCAATTCCTTCTCGAAACTCTTTGCAATTCTTCACTTGGTAGTAGTTATTGATTAACAGCCGTATATTGTATTTTAGCGCTATCACATACTGCCAGAGGCTTGATTAATGACATATAATGAATTTTAATATTCTTTCCATGATCTTGAAGAAGGAAAAGACTTATAGCTATAACATTCTTGGTTGTTGGACGAATTTCTAAAAGTTGTAATAGTACGAGTAACGTTTGTGACATTTTGAGAATTAAGAGAGAGGTTAACATAAACATGTTTTGGATCTACAATAATGCTGGCATGATTTTGTTTGTAAATGTTAATCACAGTCCTTTTTCTTTAGCAAACCTGAATCCATTTTTGCATTTCTTCTAAAGCCAGTTGCATTGATTCCATGATATATTTAATTTTGCACGATAATCTCAGTAACTTTAGCACCAGCTCTAGATCAAGATTCTGGTCAAAATTGATGCTCTAATACCAATTGATAGGACTCTGATCTCGCAATAGAAATTGACAGAAAATAACACTGAAATTGCATTGCGATGTAAGAAGGAAAATTACAATACTGAACCCCAAGCACTTGTAATGGCTTGGACTCTCCCATTGACCTTTTAGACTATGCTATGGATATCTTTTTGGATTATAAAAAATCTTCTACTGACTTGAAGTGTCAATTTATTTGACTAAAATGGTTTGGTTTGTGCTATGCAACAAAATGGAATTTCATATGTATTATGATATCCATGGGGCTTTTGTTTTGACTTCATGTGCCATTTATCGTTCATAGAGTTTATATAAACTATTTTTAATACACTTTTTCAATCCAGTTTTCTTTGATGGTAGTAATTTATCATACCTGCTCTCTCACTCTTCTTAATTTCCCATGATGTTTTCATTGGTACTTTGTAGGAATTGGTAAGGCTATAAGCATATTGTCCACAATCATGATAGGGAGTTGATTGAGATTGCTGCACATAGACCCGGTCCTTAGAAAATCATTCGGCATTGCGCCTTCGAGCGCGAAAGGAAATATTTAAATTATCCAGTTGACCTCTGCTGTGGAGGAGAGATGAGCATGAGGTTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAATAAAATTGGTTATCGCCCTAGAGCTCTGCATAATGGTCCAGACACCATTGATGAACTCTTAGACAGACATGTGGTAAAGAAAGAAAAGTCCTTTGACGACGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCACGGAAGGAGTTTGAGGACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGATTGATAAGAAACAAAGTGGTCGAGATCGACCCTGA

mRNA sequence

TTTACCCTTCCGATTCTCCCTTTTCCCTGTTCTTGCGAACTCTTCCCTTTCTTCGTGTGTCAGCTGAATCCTCAAGTTTACGCGCCTTCAAAGACGCTTGATCCTGTTCCTTCCAGCTTATCTCTATCAATCGTCCCTCCCCTCAATCTTCTTCGCCTGGCTGCTTCGAGGGAGTTGATTGAGATTGCTGCACATAGACCCGTTGACCTCTGCTGTGGAGGAGAGATGAGCATGAGGTTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAATAAAATTGGTTATCGCCCTAGAGCTCTGCATAATGGTCCAGACACCATTGATGAACTCTTAGACAGACATGTGGTAAAGAAAGAAAAGTCCTTTGACGACGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCACGGAAGGAGTTTGAGGACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGATTGATAAGAAACAAAGTGGTCGAGATCGACCCTGA

Coding sequence (CDS)

TTTACCCTTCCGATTCTCCCTTTTCCCTGTTCTTGCGAACTCTTCCCTTTCTTCGTGTGTCAGCTGAATCCTCAAGTTTACGCGCCTTCAAAGACGCTTGATCCTGTTCCTTCCAGCTTATCTCTATCAATCGTCCCTCCCCTCAATCTTCTTCGCCTGGCTGCTTCGAGGGAGTTGATTGAGATTGCTGCACATAGACCCGTTGACCTCTGCTGTGGAGGAGAGATGAGCATGAGGTTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAATAAAATTGGTTATCGCCCTAGAGCTCTGCATAATGGTCCAGACACCATTGATGAACTCTTAGACAGACATGTGGTAAAGAAAGAAAAGTCCTTTGACGACGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCACGGAAGGAGTTTGAGGACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGATTGATAAGAAACAAAGTGGTCGAGATCGACCCTGA

Protein sequence

FTLPILPFPCSCELFPFFVCQLNPQVYAPSKTLDPVPSSLSLSIVPPLNLLRLAASRELIEIAAHRPVDLCCGGEMSMRLVEKCVKLSTHKNFLACNKIGYRPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP

Homology

[Close]

BLAST of Cp4.1LG11g02750 vs. TrEMBL
Match: A0A0A0LMK5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G346590 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.3e-67
Identity = 130/157 (82.80%), Postives = 147/157 (93.63%), Query Frame = 1


Query: 76  MSMRLVEKCVKLST-HKNFLACNKIGYRPRALHNGPDTIDELLDRHVVKKEKSFDDDEEE 135
           M+MRLV K + LS+ HKNFL C+KIG+ PR LHNGPDT++ELLDRHVVKKEK FDD++++
Sbjct: 1   MTMRLVGKYLNLSSIHKNFLTCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKFFDDEDDK 60

Query: 136 LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPE 195
           LITQRRLT+TRREALSLYRDILRATRFFMWPDSRGVLWRDVLR+NARKEFEDAR E+DPE
Sbjct: 61  LITQRRLTTTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFEDARLESDPE 120

Query: 196 IVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR 232
           +VTRLLIGGRDAVQSALDKLAEKQR+EIDKKQ GRD+
Sbjct: 121 MVTRLLIGGRDAVQSALDKLAEKQREEIDKKQGGRDQ 157

[Close]

BLAST of Cp4.1LG11g02750 vs. TrEMBL
Match: A0A061FEJ8_THECC (LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_034295 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 9.2e-54
Identity = 108/148 (72.97%), Postives = 130/148 (87.84%), Query Frame = 1


Query: 81  VEKCVKLSTHKNFLACNKIGYRPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRR 140
           + KC  L+     ++ N + +  R LHNGPDT++ELLDRHVVKKEKS +++EEEL+T+RR
Sbjct: 5   LHKCRNLTICLKPVSGNDVVFIQRFLHNGPDTVEELLDRHVVKKEKSLNEEEEELLTRRR 64

Query: 141 LTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLL 200
           LTSTRREALSLYRDILRATRFFMW DSRGVLWRDVLR+NARKEFE+ARFE DPE+VTRLL
Sbjct: 65  LTSTRREALSLYRDILRATRFFMWADSRGVLWRDVLRENARKEFEEARFEKDPEVVTRLL 124

Query: 201 IGGRDAVQSALDKLAEKQRQEIDKKQSG 229
           IGGRDAVQ+AL+KLAEKQRQ+I+K++ G
Sbjct: 125 IGGRDAVQTALEKLAEKQRQQIEKERGG 152

[Close]

BLAST of Cp4.1LG11g02750 vs. TrEMBL
Match: W9R727_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025066 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 3.5e-53
Identity = 107/128 (83.59%), Postives = 121/128 (94.53%), Query Frame = 1


Query: 104 RALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFM 163
           R LH+GPDT++ELLDRH+VKK+KS DD+E+EL  +RRLTSTRREALSLYRDILRATRFF 
Sbjct: 24  RLLHDGPDTVEELLDRHLVKKDKSVDDEEDELSARRRLTSTRREALSLYRDILRATRFFT 83

Query: 164 WPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEID 223
           WPDSRGVLWRDVLR+NARKEFEDARFETDPEIVTRL+IGGRDAVQSALDKL EKQRQEI+
Sbjct: 84  WPDSRGVLWRDVLRENARKEFEDARFETDPEIVTRLVIGGRDAVQSALDKLIEKQRQEIE 143

Query: 224 KKQSGRDR 232
           +++SG DR
Sbjct: 144 QERSGGDR 151

[Close]

BLAST of Cp4.1LG11g02750 vs. TrEMBL
Match: F6H0E1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00900 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 3.5e-53
Identity = 106/149 (71.14%), Postives = 128/149 (85.91%), Query Frame = 1


Query: 83  KCVKLSTHKNFLACNKIGYRPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLT 142
           KC  L+   N +  N I  + R LH GPDT++ELL+RH+VKK  S+DD+E+E++T+RRLT
Sbjct: 5   KCRNLAIFLNQMIRNDIVLQRRFLHEGPDTVEELLERHIVKKGNSYDDEEDEILTRRRLT 64

Query: 143 STRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIG 202
           STRREALSLYRDILRATRFFMWPDSRGVLWRDVLR+NARKEFE+ARFE DPEI+TRLLIG
Sbjct: 65  STRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFEEARFEKDPEIITRLLIG 124

Query: 203 GRDAVQSALDKLAEKQRQEIDKKQSGRDR 232
           GRDAVQSALDKL EKQ++ ++K++  RDR
Sbjct: 125 GRDAVQSALDKLVEKQKELVEKERRDRDR 153

[Close]

BLAST of Cp4.1LG11g02750 vs. TrEMBL
Match: A0A068UFL1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024581001 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.0e-52
Identity = 106/151 (70.20%), Postives = 130/151 (86.09%), Query Frame = 1


Query: 86  KLSTHKNFLACNKIGYRP----RALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRL 145
           KL  ++  L  +   ++P    R LH+GPDT++ELLDRHVVKKE+S DDDE EL+T++RL
Sbjct: 4   KLHAYRALLLTHPRSHQPNSHLRLLHHGPDTVEELLDRHVVKKERSLDDDENELLTRQRL 63

Query: 146 TSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLI 205
           TSTRREALSLYRDI+RA+RFFMWPDSRGVLWRDVLR+NARKEFE+ARFE DPEI+TRLLI
Sbjct: 64  TSTRREALSLYRDIIRASRFFMWPDSRGVLWRDVLRENARKEFEEARFEKDPEIITRLLI 123

Query: 206 GGRDAVQSALDKLAEKQRQEIDKKQSGRDRP 233
           GGRDAVQ+ALDKL EKQ+Q+I+K+++   RP
Sbjct: 124 GGRDAVQAALDKLVEKQKQQIEKERNDSTRP 154

[Close]

BLAST of Cp4.1LG11g02750 vs. TAIR10
Match: AT1G76060.1 (AT1G76060.1 LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-47
Identity = 96/129 (74.42%), Postives = 109/129 (84.50%), Query Frame = 1


Query: 104 RALHNGPDTIDELLDRHVVKKEKSF-DDDEEELITQRRLTSTRREALSLYRDILRATRFF 163
           R LH GPDT++ELL+RH+ KKEK   D DE E + +RRLTSTRREALSLYRDILRATRFF
Sbjct: 29  RFLHEGPDTVEELLERHLAKKEKPIIDHDEAEFLNRRRLTSTRREALSLYRDILRATRFF 88

Query: 164 MWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEI 223
            W DSRG LWRDVLR+NARKEFE ARFETDPE++TRLLIGG DAV SALDKLAEKQR+ I
Sbjct: 89  TWIDSRGNLWRDVLRENARKEFEAARFETDPEVITRLLIGGSDAVSSALDKLAEKQREMI 148

Query: 224 DKKQSGRDR 232
           +K++ G  R
Sbjct: 149 EKQRRGDQR 157

[Close]

BLAST of Cp4.1LG11g02750 vs. NCBI nr
Match: gi|700207150|gb|KGN62269.1| (hypothetical protein Csa_2G346590 [Cucumis sativus])

HSP 1 Score: 263.1 bits (671), Expect = 4.7e-67
Identity = 130/157 (82.80%), Postives = 147/157 (93.63%), Query Frame = 1


Query: 76  MSMRLVEKCVKLST-HKNFLACNKIGYRPRALHNGPDTIDELLDRHVVKKEKSFDDDEEE 135
           M+MRLV K + LS+ HKNFL C+KIG+ PR LHNGPDT++ELLDRHVVKKEK FDD++++
Sbjct: 1   MTMRLVGKYLNLSSIHKNFLTCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKFFDDEDDK 60

Query: 136 LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPE 195
           LITQRRLT+TRREALSLYRDILRATRFFMWPDSRGVLWRDVLR+NARKEFEDAR E+DPE
Sbjct: 61  LITQRRLTTTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFEDARLESDPE 120

Query: 196 IVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR 232
           +VTRLLIGGRDAVQSALDKLAEKQR+EIDKKQ GRD+
Sbjct: 121 MVTRLLIGGRDAVQSALDKLAEKQREEIDKKQGGRDQ 157

[Close]

BLAST of Cp4.1LG11g02750 vs. NCBI nr
Match: gi|659089585|ref|XP_008445589.1| (PREDICTED: uncharacterized protein LOC103488569 [Cucumis melo])

HSP 1 Score: 248.4 bits (633), Expect = 1.2e-62
Identity = 123/139 (88.49%), Postives = 133/139 (95.68%), Query Frame = 1


Query: 93  FLACNKIGYRPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLY 152
           F A +KIG+ PR LHNGPDT++ELLDRHVVKKEKS DDD ++LITQRRLTSTRREALSLY
Sbjct: 59  FAASSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADKLITQRRLTSTRREALSLY 118

Query: 153 RDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALD 212
           RDILRATRFFMWPDS+GVLWRDVLRQNARKEFEDARFE+DPEIVTRLLIGGRDAVQSALD
Sbjct: 119 RDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPEIVTRLLIGGRDAVQSALD 178

Query: 213 KLAEKQRQEIDKKQSGRDR 232
           KLAEKQR+EIDKKQSGRD+
Sbjct: 179 KLAEKQRKEIDKKQSGRDQ 197

[Close]

BLAST of Cp4.1LG11g02750 vs. NCBI nr
Match: gi|778674266|ref|XP_011650175.1| (PREDICTED: uncharacterized protein LOC101214249 [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 8.5e-61
Identity = 118/139 (84.89%), Postives = 132/139 (94.96%), Query Frame = 1


Query: 93  FLACNKIGYRPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLY 152
           F A +KIG+ PR LHNGPDT++ELLDRHVVKKEK FDD++++LITQRRLT+TRREALSLY
Sbjct: 76  FAASSKIGFHPRVLHNGPDTVEELLDRHVVKKEKFFDDEDDKLITQRRLTTTRREALSLY 135

Query: 153 RDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALD 212
           RDILRATRFFMWPDSRGVLWRDVLR+NARKEFEDAR E+DPE+VTRLLIGGRDAVQSALD
Sbjct: 136 RDILRATRFFMWPDSRGVLWRDVLRENARKEFEDARLESDPEMVTRLLIGGRDAVQSALD 195

Query: 213 KLAEKQRQEIDKKQSGRDR 232
           KLAEKQR+EIDKKQ GRD+
Sbjct: 196 KLAEKQREEIDKKQGGRDQ 214

[Close]

BLAST of Cp4.1LG11g02750 vs. NCBI nr
Match: gi|590594637|ref|XP_007017907.1| (LYR family of Fe/S cluster biogenesis protein [Theobroma cacao])

HSP 1 Score: 218.4 bits (555), Expect = 1.3e-53
Identity = 108/148 (72.97%), Postives = 130/148 (87.84%), Query Frame = 1


Query: 81  VEKCVKLSTHKNFLACNKIGYRPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRR 140
           + KC  L+     ++ N + +  R LHNGPDT++ELLDRHVVKKEKS +++EEEL+T+RR
Sbjct: 5   LHKCRNLTICLKPVSGNDVVFIQRFLHNGPDTVEELLDRHVVKKEKSLNEEEEELLTRRR 64

Query: 141 LTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLL 200
           LTSTRREALSLYRDILRATRFFMW DSRGVLWRDVLR+NARKEFE+ARFE DPE+VTRLL
Sbjct: 65  LTSTRREALSLYRDILRATRFFMWADSRGVLWRDVLRENARKEFEEARFEKDPEVVTRLL 124

Query: 201 IGGRDAVQSALDKLAEKQRQEIDKKQSG 229
           IGGRDAVQ+AL+KLAEKQRQ+I+K++ G
Sbjct: 125 IGGRDAVQTALEKLAEKQRQQIEKERGG 152

[Close]

BLAST of Cp4.1LG11g02750 vs. NCBI nr
Match: gi|703076699|ref|XP_010090401.1| (hypothetical protein L484_025066 [Morus notabilis])

HSP 1 Score: 216.5 bits (550), Expect = 5.0e-53
Identity = 107/128 (83.59%), Postives = 121/128 (94.53%), Query Frame = 1


Query: 104 RALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFM 163
           R LH+GPDT++ELLDRH+VKK+KS DD+E+EL  +RRLTSTRREALSLYRDILRATRFF 
Sbjct: 24  RLLHDGPDTVEELLDRHLVKKDKSVDDEEDELSARRRLTSTRREALSLYRDILRATRFFT 83

Query: 164 WPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEID 223
           WPDSRGVLWRDVLR+NARKEFEDARFETDPEIVTRL+IGGRDAVQSALDKL EKQRQEI+
Sbjct: 84  WPDSRGVLWRDVLRENARKEFEDARFETDPEIVTRLVIGGRDAVQSALDKLIEKQRQEIE 143

Query: 224 KKQSGRDR 232
           +++SG DR
Sbjct: 144 QERSGGDR 151

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g02750 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g02750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMK5_CUCSA	3.3e-67	82.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G346590 PE=3 SV=1	[more]
A0A061FEJ8_THECC	9.2e-54	72.97	LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_034295 P...	[more]
W9R727_9ROSA	3.5e-53	83.59	Uncharacterized protein OS=Morus notabilis GN=L484_025066 PE=3 SV=1	[more]
F6H0E1_VITVI	3.5e-53	71.14	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00900 PE=3 SV=...	[more]
A0A068UFL1_COFCA	1.0e-52	70.20	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024581001 PE=3 SV=1	[more]

BLAST of Cp4.1LG11g02750 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76060.1	1.1e-47	74.42	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of Cp4.1LG11g02750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207150\|gb\|KGN62269.1\|	4.7e-67	82.80	hypothetical protein Csa_2G346590 [Cucumis sativus]	[more]
gi\|659089585\|ref\|XP_008445589.1\|	1.2e-62	88.49	PREDICTED: uncharacterized protein LOC103488569 [Cucumis melo]	[more]
gi\|778674266\|ref\|XP_011650175.1\|	8.5e-61	84.89	PREDICTED: uncharacterized protein LOC101214249 [Cucumis sativus]	[more]
gi\|590594637\|ref\|XP_007017907.1\|	1.3e-53	72.97	LYR family of Fe/S cluster biogenesis protein [Theobroma cacao]	[more]
gi\|703076699\|ref\|XP_010090401.1\|	5.0e-53	83.59	hypothetical protein L484_025066 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008011	Complex1_LYR

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005623	cell
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g02750.1	Cp4.1LG11g02750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 146..206 score: 1.6
None	No IPR available	PANTHER	PTHR13166	PROTEIN C6ORF149	coord: 137..214 score: 7.1
None	No IPR available	PANTHER	PTHR13166:SF4	SUBFAMILY NOT NAMED	coord: 137..214 score: 7.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g02750	Cucsa.394010	Cucumber (Gy14) v1	cgycpeB1040
Cp4.1LG11g02750	CmaCh05G003250	Cucurbita maxima (Rimu)	cmacpeB766
Cp4.1LG11g02750	CmoCh05G003280	Cucurbita moschata (Rifu)	cmocpeB720
Cp4.1LG11g02750	Cla022398	Watermelon (97103) v1	cpewmB101
Cp4.1LG11g02750	Csa2G346590	Cucumber (Chinese Long) v2	cpecuB099
Cp4.1LG11g02750	MELO3C011341	Melon (DHL92) v3.5.1	cpemeB089
Cp4.1LG11g02750	ClCG08G014030	Watermelon (Charleston Gray)	cpewcgB125
Cp4.1LG11g02750	CSPI02G16840	Wild cucumber (PI 183967)	cpecpiB096
Cp4.1LG11g02750	Lsi08G012940	Bottle gourd (USVL1VR-Ls)	cpelsiB100
Cp4.1LG11g02750	MELO3C011341.2	Melon (DHL92) v3.6.1	cpemedB112
Cp4.1LG11g02750	CsaV3_2G024420	Cucumber (Chinese Long) v3	cpecucB0109
Cp4.1LG11g02750	Bhi04G000092	Wax gourd	cpewgoB0142
Cp4.1LG11g02750	CsGy2G016820	Cucumber (Gy14) v2	cgybcpeB165
Cp4.1LG11g02750	Carg09386	Silver-seed gourd	carcpeB0199

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g02750	Cucurbita pepo (Zucchini)	cpecpeB061
Cp4.1LG11g02750	Cucurbita pepo (Zucchini)	cpecpeB110
Cp4.1LG11g02750	Cucurbita pepo (Zucchini)	cpecpeB112
Cp4.1LG11g02750	Cucurbita pepo (Zucchini)	cpecpeB146
Cp4.1LG11g02750	Cucurbita maxima (Rimu)	cmacpeB179
Cp4.1LG11g02750	Cucurbita moschata (Rifu)	cmocpeB154
Cp4.1LG11g02750	Wild cucumber (PI 183967)	cpecpiB124
Cp4.1LG11g02750	Watermelon (Charleston Gray)	cpewcgB106
Cp4.1LG11g02750	Watermelon (97103) v1	cpewmB115
Cp4.1LG11g02750	Cucumber (Gy14) v2	cgybcpeB716
Cp4.1LG11g02750	Cucumber (Gy14) v2	cgybcpeB897
Cp4.1LG11g02750	Silver-seed gourd	carcpeB1352
Cp4.1LG11g02750	Cucumber (Chinese Long) v3	cpecucB0133
Cp4.1LG11g02750	Wax gourd	cpewgoB0153