CmoCh05G003280 (gene) Cucurbita moschata (Rifu)

NameCmoCh05G003280
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionLYR family of Fe/S cluster biogenesis protein
LocationCmo_Chr05 : 1453585 .. 1454058 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCATGAGGTTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAACAAAGTTGGTTTCCACCCTCGACTTCTGCATAATGGTCCAGACACCATTGATGAACTCTTAGACAGACATGTGGTAAAGAAAGAAAAGTCCTTTGATGATGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCACGGAAGGAGTTTGAGGACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGATTGATAAGAAACAAAGTGGTCGAGATCGACCCTGA

mRNA sequence

ATGAGCATGAGGTTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAACAAAGTTGGTTTCCACCCTCGACTTCTGCATAATGGTCCAGACACCATTGATGAACTCTTAGACAGACATGTGGTAAAGAAAGAAAAGTCCTTTGATGATGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCACGGAAGGAGTTTGAGGACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGATTGATAAGAAACAAAGTGGTCGAGATCGACCCTGA

Coding sequence (CDS)

ATGAGCATGAGGTTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAACAAAGTTGGTTTCCACCCTCGACTTCTGCATAATGGTCCAGACACCATTGATGAACTCTTAGACAGACATGTGGTAAAGAAAGAAAAGTCCTTTGATGATGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCACGGAAGGAGTTTGAGGACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGATTGATAAGAAACAAAGTGGTCGAGATCGACCCTGA
BLAST of CmoCh05G003280 vs. TrEMBL
Match: A0A0A0LMK5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G346590 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.6e-68
Identity = 131/157 (83.44%), Postives = 149/157 (94.90%), Query Frame = 1

Query: 1   MSMRLVEKCVKLST-HKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEE 60
           M+MRLV K + LS+ HKNFL C+K+GFHPR+LHNGPDT++ELLDRHVVKKEK FDD++++
Sbjct: 1   MTMRLVGKYLNLSSIHKNFLTCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKFFDDEDDK 60

Query: 61  LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPE 120
           LITQRRLT+TRREALSLYRDILRATRFFMWPDSRGVLWRDVLR+NARKEFEDAR E+DPE
Sbjct: 61  LITQRRLTTTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFEDARLESDPE 120

Query: 121 IVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR 157
           +VTRLLIGGRDAVQSALDKLAEKQR+EIDKKQ GRD+
Sbjct: 121 MVTRLLIGGRDAVQSALDKLAEKQREEIDKKQGGRDQ 157

BLAST of CmoCh05G003280 vs. TrEMBL
Match: A0A061FEJ8_THECC (LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_034295 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.6e-54
Identity = 110/148 (74.32%), Postives = 130/148 (87.84%), Query Frame = 1

Query: 6   VEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRR 65
           + KC  L+     ++ N V F  R LHNGPDT++ELLDRHVVKKEKS +++EEEL+T+RR
Sbjct: 5   LHKCRNLTICLKPVSGNDVVFIQRFLHNGPDTVEELLDRHVVKKEKSLNEEEEELLTRRR 64

Query: 66  LTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLL 125
           LTSTRREALSLYRDILRATRFFMW DSRGVLWRDVLR+NARKEFE+ARFE DPE+VTRLL
Sbjct: 65  LTSTRREALSLYRDILRATRFFMWADSRGVLWRDVLRENARKEFEEARFEKDPEVVTRLL 124

Query: 126 IGGRDAVQSALDKLAEKQRQEIDKKQSG 154
           IGGRDAVQ+AL+KLAEKQRQ+I+K++ G
Sbjct: 125 IGGRDAVQTALEKLAEKQRQQIEKERGG 152

BLAST of CmoCh05G003280 vs. TrEMBL
Match: W9R727_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025066 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.1e-54
Identity = 108/128 (84.38%), Postives = 122/128 (95.31%), Query Frame = 1

Query: 29  RLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFM 88
           RLLH+GPDT++ELLDRH+VKK+KS DD+E+EL  +RRLTSTRREALSLYRDILRATRFF 
Sbjct: 24  RLLHDGPDTVEELLDRHLVKKDKSVDDEEDELSARRRLTSTRREALSLYRDILRATRFFT 83

Query: 89  WPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEID 148
           WPDSRGVLWRDVLR+NARKEFEDARFETDPEIVTRL+IGGRDAVQSALDKL EKQRQEI+
Sbjct: 84  WPDSRGVLWRDVLRENARKEFEDARFETDPEIVTRLVIGGRDAVQSALDKLIEKQRQEIE 143

Query: 149 KKQSGRDR 157
           +++SG DR
Sbjct: 144 QERSGGDR 151

BLAST of CmoCh05G003280 vs. TrEMBL
Match: F6H0E1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00900 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.4e-53
Identity = 105/149 (70.47%), Postives = 127/149 (85.23%), Query Frame = 1

Query: 8   KCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLT 67
           KC  L+   N +  N +    R LH GPDT++ELL+RH+VKK  S+DD+E+E++T+RRLT
Sbjct: 5   KCRNLAIFLNQMIRNDIVLQRRFLHEGPDTVEELLERHIVKKGNSYDDEEDEILTRRRLT 64

Query: 68  STRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIG 127
           STRREALSLYRDILRATRFFMWPDSRGVLWRDVLR+NARKEFE+ARFE DPEI+TRLLIG
Sbjct: 65  STRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFEEARFEKDPEIITRLLIG 124

Query: 128 GRDAVQSALDKLAEKQRQEIDKKQSGRDR 157
           GRDAVQSALDKL EKQ++ ++K++  RDR
Sbjct: 125 GRDAVQSALDKLVEKQKELVEKERRDRDR 153

BLAST of CmoCh05G003280 vs. TrEMBL
Match: A0A068UFL1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024581001 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.1e-53
Identity = 104/131 (79.39%), Postives = 123/131 (93.89%), Query Frame = 1

Query: 27  HPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRF 86
           H RLLH+GPDT++ELLDRHVVKKE+S DDDE EL+T++RLTSTRREALSLYRDI+RA+RF
Sbjct: 24  HLRLLHHGPDTVEELLDRHVVKKERSLDDDENELLTRQRLTSTRREALSLYRDIIRASRF 83

Query: 87  FMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQE 146
           FMWPDSRGVLWRDVLR+NARKEFE+ARFE DPEI+TRLLIGGRDAVQ+ALDKL EKQ+Q+
Sbjct: 84  FMWPDSRGVLWRDVLRENARKEFEEARFEKDPEIITRLLIGGRDAVQAALDKLVEKQKQQ 143

Query: 147 IDKKQSGRDRP 158
           I+K+++   RP
Sbjct: 144 IEKERNDSTRP 154

BLAST of CmoCh05G003280 vs. TAIR10
Match: AT1G76060.1 (AT1G76060.1 LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 187.6 bits (475), Expect = 6.0e-48
Identity = 96/129 (74.42%), Postives = 109/129 (84.50%), Query Frame = 1

Query: 29  RLLHNGPDTIDELLDRHVVKKEKSF-DDDEEELITQRRLTSTRREALSLYRDILRATRFF 88
           R LH GPDT++ELL+RH+ KKEK   D DE E + +RRLTSTRREALSLYRDILRATRFF
Sbjct: 29  RFLHEGPDTVEELLERHLAKKEKPIIDHDEAEFLNRRRLTSTRREALSLYRDILRATRFF 88

Query: 89  MWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEI 148
            W DSRG LWRDVLR+NARKEFE ARFETDPE++TRLLIGG DAV SALDKLAEKQR+ I
Sbjct: 89  TWIDSRGNLWRDVLRENARKEFEAARFETDPEVITRLLIGGSDAVSSALDKLAEKQREMI 148

Query: 149 DKKQSGRDR 157
           +K++ G  R
Sbjct: 149 EKQRRGDQR 157

BLAST of CmoCh05G003280 vs. NCBI nr
Match: gi|700207150|gb|KGN62269.1| (hypothetical protein Csa_2G346590 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.7e-68
Identity = 131/157 (83.44%), Postives = 149/157 (94.90%), Query Frame = 1

Query: 1   MSMRLVEKCVKLST-HKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEE 60
           M+MRLV K + LS+ HKNFL C+K+GFHPR+LHNGPDT++ELLDRHVVKKEK FDD++++
Sbjct: 1   MTMRLVGKYLNLSSIHKNFLTCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKFFDDEDDK 60

Query: 61  LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPE 120
           LITQRRLT+TRREALSLYRDILRATRFFMWPDSRGVLWRDVLR+NARKEFEDAR E+DPE
Sbjct: 61  LITQRRLTTTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFEDARLESDPE 120

Query: 121 IVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR 157
           +VTRLLIGGRDAVQSALDKLAEKQR+EIDKKQ GRD+
Sbjct: 121 MVTRLLIGGRDAVQSALDKLAEKQREEIDKKQGGRDQ 157

BLAST of CmoCh05G003280 vs. NCBI nr
Match: gi|659089585|ref|XP_008445589.1| (PREDICTED: uncharacterized protein LOC103488569 [Cucumis melo])

HSP 1 Score: 252.3 bits (643), Expect = 5.6e-64
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 1

Query: 18  FLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLY 77
           F A +K+GFHPR+LHNGPDT++ELLDRHVVKKEKS DDD ++LITQRRLTSTRREALSLY
Sbjct: 59  FAASSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADKLITQRRLTSTRREALSLY 118

Query: 78  RDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALD 137
           RDILRATRFFMWPDS+GVLWRDVLRQNARKEFEDARFE+DPEIVTRLLIGGRDAVQSALD
Sbjct: 119 RDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPEIVTRLLIGGRDAVQSALD 178

Query: 138 KLAEKQRQEIDKKQSGRDR 157
           KLAEKQR+EIDKKQSGRD+
Sbjct: 179 KLAEKQRKEIDKKQSGRDQ 197

BLAST of CmoCh05G003280 vs. NCBI nr
Match: gi|778674266|ref|XP_011650175.1| (PREDICTED: uncharacterized protein LOC101214249 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 4.0e-62
Identity = 119/139 (85.61%), Postives = 134/139 (96.40%), Query Frame = 1

Query: 18  FLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLY 77
           F A +K+GFHPR+LHNGPDT++ELLDRHVVKKEK FDD++++LITQRRLT+TRREALSLY
Sbjct: 76  FAASSKIGFHPRVLHNGPDTVEELLDRHVVKKEKFFDDEDDKLITQRRLTTTRREALSLY 135

Query: 78  RDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALD 137
           RDILRATRFFMWPDSRGVLWRDVLR+NARKEFEDAR E+DPE+VTRLLIGGRDAVQSALD
Sbjct: 136 RDILRATRFFMWPDSRGVLWRDVLRENARKEFEDARLESDPEMVTRLLIGGRDAVQSALD 195

Query: 138 KLAEKQRQEIDKKQSGRDR 157
           KLAEKQR+EIDKKQ GRD+
Sbjct: 196 KLAEKQREEIDKKQGGRDQ 214

BLAST of CmoCh05G003280 vs. NCBI nr
Match: gi|590594637|ref|XP_007017907.1| (LYR family of Fe/S cluster biogenesis protein [Theobroma cacao])

HSP 1 Score: 220.3 bits (560), Expect = 2.4e-54
Identity = 110/148 (74.32%), Postives = 130/148 (87.84%), Query Frame = 1

Query: 6   VEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRR 65
           + KC  L+     ++ N V F  R LHNGPDT++ELLDRHVVKKEKS +++EEEL+T+RR
Sbjct: 5   LHKCRNLTICLKPVSGNDVVFIQRFLHNGPDTVEELLDRHVVKKEKSLNEEEEELLTRRR 64

Query: 66  LTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLL 125
           LTSTRREALSLYRDILRATRFFMW DSRGVLWRDVLR+NARKEFE+ARFE DPE+VTRLL
Sbjct: 65  LTSTRREALSLYRDILRATRFFMWADSRGVLWRDVLRENARKEFEEARFEKDPEVVTRLL 124

Query: 126 IGGRDAVQSALDKLAEKQRQEIDKKQSG 154
           IGGRDAVQ+AL+KLAEKQRQ+I+K++ G
Sbjct: 125 IGGRDAVQTALEKLAEKQRQQIEKERGG 152

BLAST of CmoCh05G003280 vs. NCBI nr
Match: gi|703076699|ref|XP_010090401.1| (hypothetical protein L484_025066 [Morus notabilis])

HSP 1 Score: 218.0 bits (554), Expect = 1.2e-53
Identity = 108/128 (84.38%), Postives = 122/128 (95.31%), Query Frame = 1

Query: 29  RLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFM 88
           RLLH+GPDT++ELLDRH+VKK+KS DD+E+EL  +RRLTSTRREALSLYRDILRATRFF 
Sbjct: 24  RLLHDGPDTVEELLDRHLVKKDKSVDDEEDELSARRRLTSTRREALSLYRDILRATRFFT 83

Query: 89  WPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEID 148
           WPDSRGVLWRDVLR+NARKEFEDARFETDPEIVTRL+IGGRDAVQSALDKL EKQRQEI+
Sbjct: 84  WPDSRGVLWRDVLRENARKEFEDARFETDPEIVTRLVIGGRDAVQSALDKLIEKQRQEIE 143

Query: 149 KKQSGRDR 157
           +++SG DR
Sbjct: 144 QERSGGDR 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LMK5_CUCSA2.6e-6883.44Uncharacterized protein OS=Cucumis sativus GN=Csa_2G346590 PE=3 SV=1[more]
A0A061FEJ8_THECC1.6e-5474.32LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_034295 P... [more]
W9R727_9ROSA8.1e-5484.38Uncharacterized protein OS=Morus notabilis GN=L484_025066 PE=3 SV=1[more]
F6H0E1_VITVI2.4e-5370.47Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00900 PE=3 SV=... [more]
A0A068UFL1_COFCA3.1e-5379.39Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024581001 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT1G76060.16.0e-4874.42 LYR family of Fe/S cluster biogenesis protein[more]
Match NameE-valueIdentityDescription
gi|700207150|gb|KGN62269.1|3.7e-6883.44hypothetical protein Csa_2G346590 [Cucumis sativus][more]
gi|659089585|ref|XP_008445589.1|5.6e-6489.21PREDICTED: uncharacterized protein LOC103488569 [Cucumis melo][more]
gi|778674266|ref|XP_011650175.1|4.0e-6285.61PREDICTED: uncharacterized protein LOC101214249 [Cucumis sativus][more]
gi|590594637|ref|XP_007017907.1|2.4e-5474.32LYR family of Fe/S cluster biogenesis protein [Theobroma cacao][more]
gi|703076699|ref|XP_010090401.1|1.2e-5384.38hypothetical protein L484_025066 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005623 cell
molecular_function GO:0003674 molecular_function
molecular_function GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
molecular_function GO:0015035 protein disulfide oxidoreductase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G003280.1CmoCh05G003280.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 71..131
score: 7.4
NoneNo IPR availablePANTHERPTHR13166PROTEIN C6ORF149coord: 62..139
score: 7.1
NoneNo IPR availablePANTHERPTHR13166:SF4SUBFAMILY NOT NAMEDcoord: 62..139
score: 7.1

The following gene(s) are paralogous to this gene:

None