Cp4.1LG10g01110 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g01110
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionE3 ubiquitin-protein ligase RHA2A
LocationCp4.1LG10 : 3386256 .. 3388389 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGCAGGGACGATTTTTTTCCGAAAGATTATAAAATTAAAAGAATTGAATCAGTGGAAACTATCCGCCAATTTCCATCCCGAAGCCATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCATCACCCTTTTACTTCTCGAATGCGTTACTCTCATTCGCACCATCTTCGGTTTGAGACCTAACGCCGACAAGCGCGTAATTACGACGGCGCAGTTTTTGAAATTGATCGAGGAGAAGAATCCGACCATCCGATTCTCCAAGAAAGTTACCTCGAGTTCGGACGATCAGTGCGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGATGGTACGGAAATTGCAATGCAACCATACTTTTCACAAGGATTGCCTCGATAATTGGTTGAAACTCTTTTTTGCTACCTGTCCGCTTTGCCGGTGTAAGGTTTTGCCGGACGATATCGTCGCCGGTTACCGCAGGCTGCGAGACCGTGTAGAGTACGACGGCAGCGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGGTAACAGTATATATAGGTTTTTCTAGGGCGAAATACCAATTTCATTTTGTTCATCACAGAATAGAATCAAATAGCATAGAATCTTGATTTTCTGTATTAACTAGGAAATATTGTTTTCTCCTTTCACTGACGAACAATAGCGTTAGGGAACAGCTCGTTTCTGGTTCGATTGATCAGGAGCCAGATCGCGATAAATCGTGTATGCTTCTCTTGCAATTACGCAAGCCAACTGTTTGATACTTCGTTTGCATGATTGCTTCCTACTCTTCCTGGTTATTCGTCAACGAATATCATTAATTCTGGGGACAGCCAATTTACTTGATTTTTTTTNGGGGGACCTTTGTTCCCAATAAGACACTGAAATCTGCTCTAGAATCATCCAAAGCATAGCATCTTTTATCCATCCGGAAGTTTACTTGGGCTAATCCGAAGGATCTTTAACAAAATTGAAGATGTTAGTTAGATGATCCCTTAGTGTCATTTGAAGGAGGCTTATTGCCTCGTAGGGCCAGGGGATATTATGCGACTTATAATTATAGTAGATGCGAGTTGGTGGTCTAATTTATGGGGCTTTTAGAGGGTAACTAGAATGGTACTTGACGGCATTTATTAAGAACATAAGTTGAAAGAAAAAGCAAAATTTGTTGGTTTTCCCTTGTGTTTCCATGGGGGTTTAGGTGGAGATGGTAGGAGGAGGACCAAAGGCTCTGTTTGTAGGCTGTAACAAACTGATTTAGCTCATCTTCTCTGTAGTTAAGCCCCAATCTTATGTGTTTCTGTTGCCCATTTTCTTCAATCCTACTCCAACTCTTGAACACCCATCAAAAGATGAGGGAAATTGAGGACATGCTTAATTAGCAGCCTGGTCTGATAAAACAATTTTCAAGAACCATGATTGGGTCAGGTGACTTGTATTATTAAGGTTATATTGCGTAGTTCAAGGAATAACAACTTTAGCATTCTCAGAATCAAGTTTTATATGGTGAACCCAAATACCTTCCCACTGTCTTTAGGACTGTTCCTGAGAATAAGTTCGAAAAATTTCCTCTCCTAAATATTCTGTACGTCGGGCACTTGCAATAAGTTGAAAGGGAGCAGGCTAGACCTGGTGGTGCAGGGAAAGGTAATTGTAAAAGATTTGACATTTAATACCAGATTGTTGAGTAATAGTACCAAACCAAAAGAGCGCATCTGTTCTGGCCGTGAGTTTGGTTAGATGCAACTGATCCCATTTGAAAATTAGCGGTAATCAGGGCTGCTGGACTTTAGCATTATGTTCTTGGTGCTTTGAATTATACTCGTTTATTTTGAGATTAATTTGTGTTAGATTATCTGATGAAGATAGAATTGATTTGATGATTTGATGATTTGATTGATAGCTGTTATATCCGTTGGATTTTAAAATCATAAGGAATCTTTTATAACATGCCTATCATTCTATGTTGTGACAGCTGCCGGCAACAATTATCTGTAAGCTTGGTTTGGGGCCGAAAATAAGGGACATTCTGGATGGTCTAACATTTATATGATTATACAGTTCATGAATATAAAGATTAACCTTTATTTTTTTGTACAGTAAATAACTGA

mRNA sequence

AATGCAGGGACGATTTTTTTCCGAAAGATTATAAAATTAAAAGAATTGAATCAGTGGAAACTATCCGCCAATTTCCATCCCGAAGCCATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCATCACCCTTTTACTTCTCGAATGCGTTACTCTCATTCGCACCATCTTCGGTTTGAGACCTAACGCCGACAAGCGCGTAATTACGACGGCGCAGTTTTTGAAATTGATCGAGGAGAAGAATCCGACCATCCGATTCTCCAAGAAAGTTACCTCGAGTTCGGACGATCAGTGCGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGATGGTACGGAAATTGCAATGCAACCATACTTTTCACAAGGATTGCCTCGATAATTGGTTGAAACTCTTTTTTGCTACCTGTCCGCTTTGCCGGTGTAAGGTTTTGCCGGACGATATCGTCGCCGGTTACCGCAGGCTGCGAGACCGTGTAGAGTACGACGGCAGCGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGTAAATAACTGA

Coding sequence (CDS)

AATGCAGGGACGATTTTTTTCCGAAAGATTATAAAATTAAAAGAATTGAATCAGTGGAAACTATCCGCCAATTTCCATCCCGAAGCCATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCATCACCCTTTTACTTCTCGAATGCGTTACTCTCATTCGCACCATCTTCGGTTTGAGACCTAACGCCGACAAGCGCGTAATTACGACGGCGCAGTTTTTGAAATTGATCGAGGAGAAGAATCCGACCATCCGATTCTCCAAGAAAGTTACCTCGAGTTCGGACGATCAGTGCGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGATGGTACGGAAATTGCAATGCAACCATACTTTTCACAAGGATTGCCTCGATAATTGGTTGAAACTCTTTTTTGCTACCTGTCCGCTTTGCCGGTGTAAGGTTTTGCCGGACGATATCGTCGCCGGTTACCGCAGGCTGCGAGACCGTGTAGAGTACGACGGCAGCGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGTAAATAACTGA

Protein sequence

NAGTIFFRKIIKLKELNQWKLSANFHPEAMGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHVNN
Homology
[Close]
BLAST of Cp4.1LG10g01110 vs. Swiss-Prot
Match: RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-13
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1 

Query: 104 CAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKVLPDDIVAGYRR 161
           C VCLS+ +EGE VRKL+C H FHK CL+ WL  F  TCPLCR  ++ DD V+  +R
Sbjct: 86  CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQR 142

[Close]
BLAST of Cp4.1LG10g01110 vs. Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.1e-13
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 1 

Query: 70  DKRVITTAQFLKLIEEKNPTIRFSK--KVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFH 129
           D RV     +L+    + PT+RF    +    +D++C+VCLS+F+    + KL+C H FH
Sbjct: 67  DFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLKCGHLFH 126

Query: 130 KDCLDNWLKLFFATCPLCRCK--VLPDD 154
           K CL+ W+  +  TCPLCR    V+P+D
Sbjct: 127 KTCLEKWIDYWNITCPLCRTPLVVVPED 154

[Close]
BLAST of Cp4.1LG10g01110 vs. Swiss-Prot
Match: RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 9.0e-13
Identity = 39/104 (37.50%), Postives = 56/104 (53.85%), Query Frame = 1 

Query: 50  LLLLECVTLIRTIFGLR--PNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVC 109
           +LL    T  R +  L   P++   V+ T+    L ++ N    FS + + ++   C VC
Sbjct: 18  MLLALLATFFRHVRSLLLFPSSAPVVVVTSNLSVLADQLNLNRLFSYRYSDNAASDCIVC 77

Query: 110 LSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKVLP 152
           LS+ + GE VRKL C H FHK CL+ WL+     CPLCR  +LP
Sbjct: 78  LSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

[Close]
BLAST of Cp4.1LG10g01110 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.8e-12
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 1 

Query: 88  PTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRC 147
           PT++ +K +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR 
Sbjct: 200 PTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLEL-HNSCPVCRF 259

Query: 148 KVLPDD 154
           ++  DD
Sbjct: 260 ELPTDD 264

[Close]
BLAST of Cp4.1LG10g01110 vs. Swiss-Prot
Match: RN128_XENLA (E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis GN=rnf128 PE=2 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 4.9e-11
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 1 

Query: 89  TIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCK 148
           TI+   KV     D CAVC+  ++  ++VR L CNH FHK+C+D WL L   TCP+C+C 
Sbjct: 245 TIKQGDKVLGPDGDSCAVCIEPYKPSDVVRILTCNHFFHKNCIDPWL-LEHRTCPMCKCD 304

Query: 149 VL 151
           +L
Sbjct: 305 IL 305

[Close]
BLAST of Cp4.1LG10g01110 vs. TrEMBL
Match: A0A0A0KM08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501220 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 4.1e-73
Identity = 140/156 (89.74%), Postives = 143/156 (91.67%), Query Frame = 1 

Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           MGALSEFFSHLHTMTAVF TLLLLE V LIRTIFGLRPN+DKRVITTAQF KLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60

Query: 90  IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV 149
           IRFS KVT S  DQCAVCLSEFEEGE VRKLQCNHTFHKDCLDNWLKL FATCPLCR KV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 150 LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHVNN 186
           LPDDIVAGY RLRDRVEYDGSDEELIFLLSALH N+
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNS 156

[Close]
BLAST of Cp4.1LG10g01110 vs. TrEMBL
Match: A0A061DI69_THECC (RING-H2 zinc finger protein RHA2a OS=Theobroma cacao GN=TCM_001205 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.9e-54
Identity = 107/157 (68.15%), Postives = 132/157 (84.08%), Query Frame = 1 

Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           M ALSE+FSHL+TMT VF TLLLLE V LIR++ G   +++KR+ITT Q+LK IEEKNPT
Sbjct: 1   MAALSEYFSHLYTMTIVFFTLLLLEVVILIRSVTGGVCDSEKRLITTTQYLKFIEEKNPT 60

Query: 90  IRFSKKVTSSSD-DQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCK 149
           +R+S + +S  + ++CAVCLSE EEGE VRKL+C HTFHKDCLD WL+ ++ATCPLCR K
Sbjct: 61  VRYSSRSSSRLESNECAVCLSELEEGEEVRKLKCKHTFHKDCLDRWLQQYWATCPLCRTK 120

Query: 150 VLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHVNN 186
           VLPD+IVA Y RL++RVEYDGSDEE+IFLLSALH N+
Sbjct: 121 VLPDEIVANYHRLQNRVEYDGSDEEMIFLLSALHGNS 157

[Close]
BLAST of Cp4.1LG10g01110 vs. TrEMBL
Match: A0A0D2QDA2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G045800 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.1e-52
Identity = 104/159 (65.41%), Postives = 129/159 (81.13%), Query Frame = 1 

Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           M AL+EFFSHL+TMT VF TLLLLE   LIR++ G   +++KR+ITT Q+LK IEEKNPT
Sbjct: 1   MAALTEFFSHLYTMTVVFFTLLLLEVAILIRSLTGGLSDSEKRLITTTQYLKFIEEKNPT 60

Query: 90  IRFSKKVTSSSD---DQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCR 149
           I +S + +S  D   ++C VCLSE EEGE VRKL+C HTFHKDCLD WL+ ++ATCPLCR
Sbjct: 61  IIYSTRSSSRVDLSSNECTVCLSELEEGEKVRKLKCKHTFHKDCLDRWLQQYWATCPLCR 120

Query: 150 CKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHVNN 186
            KVLPD++VA Y RL+++VEYDGSDEE+IFLLSALH N+
Sbjct: 121 TKVLPDEVVANYHRLQNQVEYDGSDEEMIFLLSALHDNS 159

[Close]
BLAST of Cp4.1LG10g01110 vs. TrEMBL
Match: M5WD85_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012579mg PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.1e-52
Identity = 99/158 (62.66%), Postives = 132/158 (83.54%), Query Frame = 1 

Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           MGALS+FFSHL+T+T +F TLL+LE V L+R+I GL PN+ KRVITT Q+LKLIE+KNPT
Sbjct: 1   MGALSQFFSHLYTITLIFFTLLILEIVILVRSIAGLNPNSSKRVITTTQYLKLIEQKNPT 60

Query: 90  IRFSKKVTSSSDD--QCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRC 149
             +++K+ S   +  +C+VCLS+FEEG+ +R+L+C HTFH++CLD WL+ ++ATCPLCR 
Sbjct: 61  TCYTQKLRSVRPEATECSVCLSDFEEGDKIRQLKCKHTFHQNCLDRWLQQYWATCPLCRT 120

Query: 150 KVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHVNN 186
           KVL DD+VA Y RLR++V+YDGSDEELIFLLS+L  N+
Sbjct: 121 KVLSDDVVASYHRLRNQVQYDGSDEELIFLLSSLQGNS 158

[Close]
BLAST of Cp4.1LG10g01110 vs. TrEMBL
Match: B9H581_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s08300g PE=4 SV=2)

HSP 1 Score: 208.0 bits (528), Expect = 9.9e-51
Identity = 99/157 (63.06%), Postives = 125/157 (79.62%), Query Frame = 1 

Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           M +LSEFFSHL+TM  VF++LLLLE V LIR++ G    +DK +I+T Q+L+ IEEKNPT
Sbjct: 1   MASLSEFFSHLYTMAIVFLSLLLLEIVILIRSVIGSTLKSDKPIISTTQYLRHIEEKNPT 60

Query: 90  IRFSKKVTSSSDD-QCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCK 149
           I +SK++    D  +CAVCLSEF EGE VRKL+C HTFHKDCLD WL+   ATCPLCR K
Sbjct: 61  ISYSKQLMRQQDSIECAVCLSEFSEGESVRKLKCKHTFHKDCLDEWLQQCLATCPLCRAK 120

Query: 150 VLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHVNN 186
           VLPD+I+A Y R++ ++EYDGSDEE+IF+LSALH N+
Sbjct: 121 VLPDEILAKYDRMQSQIEYDGSDEEMIFMLSALHGNS 157

[Close]
BLAST of Cp4.1LG10g01110 vs. TAIR10
Match: AT1G15100.1 (AT1G15100.1 RING-H2 finger A2A)

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-14
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1 

Query: 104 CAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKVLPDDIVAGYRR 161
           C VCLS+ +EGE VRKL+C H FHK CL+ WL  F  TCPLCR  ++ DD V+  +R
Sbjct: 86  CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQR 142

[Close]
BLAST of Cp4.1LG10g01110 vs. TAIR10
Match: AT2G04240.1 (AT2G04240.1 RING/U-box superfamily protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-14
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 1 

Query: 70  DKRVITTAQFLKLIEEKNPTIRFSK--KVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFH 129
           D RV     +L+    + PT+RF    +    +D++C+VCLS+F+    + KL+C H FH
Sbjct: 67  DFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLKCGHLFH 126

Query: 130 KDCLDNWLKLFFATCPLCRCK--VLPDD 154
           K CL+ W+  +  TCPLCR    V+P+D
Sbjct: 127 KTCLEKWIDYWNITCPLCRTPLVVVPED 154

[Close]
BLAST of Cp4.1LG10g01110 vs. TAIR10
Match: AT2G01150.1 (AT2G01150.1 RING-H2 finger protein 2B)

HSP 1 Score: 75.1 bits (183), Expect = 5.1e-14
Identity = 39/104 (37.50%), Postives = 56/104 (53.85%), Query Frame = 1 

Query: 50  LLLLECVTLIRTIFGLR--PNADKRVITTAQFLKLIEEKNPTIRFSKKVTSSSDDQCAVC 109
           +LL    T  R +  L   P++   V+ T+    L ++ N    FS + + ++   C VC
Sbjct: 18  MLLALLATFFRHVRSLLLFPSSAPVVVVTSNLSVLADQLNLNRLFSYRYSDNAASDCIVC 77

Query: 110 LSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKVLP 152
           LS+ + GE VRKL C H FHK CL+ WL+     CPLCR  +LP
Sbjct: 78  LSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

[Close]
BLAST of Cp4.1LG10g01110 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-13
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 1 

Query: 88  PTIRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRC 147
           PT++ +K +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR 
Sbjct: 200 PTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLEL-HNSCPVCRF 259

Query: 148 KVLPDD 154
           ++  DD
Sbjct: 260 ELPTDD 264

[Close]
BLAST of Cp4.1LG10g01110 vs. TAIR10
Match: AT3G61460.1 (AT3G61460.1 brassinosteroid-responsive RING-H2)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-12
Identity = 34/76 (44.74%), Postives = 45/76 (59.21%), Query Frame = 1 

Query: 82  LIEEKNPTIRFSKKVTSSSD--DQCAVCLSEFEEGEMVRKLQ-CNHTFHKDCLDNWLKLF 141
           LI E  P I+F +   S  D  + CAVCL EFE  + +R L+ C H FH+ CLD W+   
Sbjct: 70  LIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHD 129

Query: 142 FATCPLCRCKVLPDDI 155
             TCPLCR   +PD++
Sbjct: 130 QKTCPLCRTPFVPDEM 145

[Close]
BLAST of Cp4.1LG10g01110 vs. NCBI nr
Match: gi|659080170|ref|XP_008440648.1| (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis melo])

HSP 1 Score: 285.0 bits (728), Expect = 9.2e-74
Identity = 142/154 (92.21%), Postives = 143/154 (92.86%), Query Frame = 1 

Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           MGALSEFFSHLHTMTAVF TLLLLE V LIRTIFGLRPNADKRVITTAQFLKLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60

Query: 90  IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV 149
           IRFS KVT S  DQCAVCLSEFEEGE VRKLQCNHTFHKDCLDNWLKL FATCPLCR KV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 150 LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHV 184
           LPDDIVAGY RLRDRVEYDGSDEELIFLLSALHV
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHV 154

[Close]
BLAST of Cp4.1LG10g01110 vs. NCBI nr
Match: gi|700193577|gb|KGN48781.1| (hypothetical protein Csa_6G501220 [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 5.9e-73
Identity = 140/156 (89.74%), Postives = 143/156 (91.67%), Query Frame = 1 

Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           MGALSEFFSHLHTMTAVF TLLLLE V LIRTIFGLRPN+DKRVITTAQF KLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60

Query: 90  IRFSKKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCKV 149
           IRFS KVT S  DQCAVCLSEFEEGE VRKLQCNHTFHKDCLDNWLKL FATCPLCR KV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 150 LPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHVNN 186
           LPDDIVAGY RLRDRVEYDGSDEELIFLLSALH N+
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNS 156

[Close]
BLAST of Cp4.1LG10g01110 vs. NCBI nr
Match: gi|470132684|ref|XP_004302206.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Fragaria vesca subsp. vesca])

HSP 1 Score: 220.3 bits (560), Expect = 2.8e-54
Identity = 102/158 (64.56%), Postives = 133/158 (84.18%), Query Frame = 1 

Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           MGALS+FFSHL+T++ +F TL  LE V L+R+I GL+PN++KRVITTAQ+LKLI++KNPT
Sbjct: 1   MGALSQFFSHLYTISIIFFTLFALEVVILVRSITGLKPNSEKRVITTAQYLKLIDQKNPT 60

Query: 90  IRFS--KKVTSSSDDQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRC 149
           + +S  KK    + ++C+VCLSEFEEGE +R+L+C H FHKDC+D WL+ ++ATCPLCR 
Sbjct: 61  VSYSSKKKNLLRAHEECSVCLSEFEEGEKIRQLKCKHRFHKDCVDKWLQQYWATCPLCRT 120

Query: 150 KVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHVNN 186
           KV+PDD+VA Y RLR++VEYDGSDEELIFLLS+L  NN
Sbjct: 121 KVVPDDVVASYHRLRNQVEYDGSDEELIFLLSSLQGNN 158

[Close]
BLAST of Cp4.1LG10g01110 vs. NCBI nr
Match: gi|590707663|ref|XP_007048067.1| (RING-H2 zinc finger protein RHA2a [Theobroma cacao])

HSP 1 Score: 220.3 bits (560), Expect = 2.8e-54
Identity = 107/157 (68.15%), Postives = 132/157 (84.08%), Query Frame = 1 

Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           M ALSE+FSHL+TMT VF TLLLLE V LIR++ G   +++KR+ITT Q+LK IEEKNPT
Sbjct: 1   MAALSEYFSHLYTMTIVFFTLLLLEVVILIRSVTGGVCDSEKRLITTTQYLKFIEEKNPT 60

Query: 90  IRFSKKVTSSSD-DQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCRCK 149
           +R+S + +S  + ++CAVCLSE EEGE VRKL+C HTFHKDCLD WL+ ++ATCPLCR K
Sbjct: 61  VRYSSRSSSRLESNECAVCLSELEEGEEVRKLKCKHTFHKDCLDRWLQQYWATCPLCRTK 120

Query: 150 VLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHVNN 186
           VLPD+IVA Y RL++RVEYDGSDEE+IFLLSALH N+
Sbjct: 121 VLPDEIVANYHRLQNRVEYDGSDEEMIFLLSALHGNS 157

[Close]
BLAST of Cp4.1LG10g01110 vs. NCBI nr
Match: gi|823140038|ref|XP_012469879.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Gossypium raimondii])

HSP 1 Score: 214.5 bits (545), Expect = 1.5e-52
Identity = 104/159 (65.41%), Postives = 129/159 (81.13%), Query Frame = 1 

Query: 30  MGALSEFFSHLHTMTAVFITLLLLECVTLIRTIFGLRPNADKRVITTAQFLKLIEEKNPT 89
           M AL+EFFSHL+TMT VF TLLLLE   LIR++ G   +++KR+ITT Q+LK IEEKNPT
Sbjct: 1   MAALTEFFSHLYTMTVVFFTLLLLEVAILIRSLTGGLSDSEKRLITTTQYLKFIEEKNPT 60

Query: 90  IRFSKKVTSSSD---DQCAVCLSEFEEGEMVRKLQCNHTFHKDCLDNWLKLFFATCPLCR 149
           I +S + +S  D   ++C VCLSE EEGE VRKL+C HTFHKDCLD WL+ ++ATCPLCR
Sbjct: 61  IIYSTRSSSRVDLSSNECTVCLSELEEGEKVRKLKCKHTFHKDCLDRWLQQYWATCPLCR 120

Query: 150 CKVLPDDIVAGYRRLRDRVEYDGSDEELIFLLSALHVNN 186
            KVLPD++VA Y RL+++VEYDGSDEE+IFLLSALH N+
Sbjct: 121 TKVLPDEVVANYHRLQNQVEYDGSDEEMIFLLSALHDNS 159

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g01110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RHA2A_ARATH1.8e-1356.14E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1[more]
XERIC_ARATH3.1e-1338.64Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE... [more]
RHA2B_ARATH9.0e-1337.50E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2[more]
RNG1L_ARATH5.8e-1245.45E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
RN128_XENLA4.9e-1146.77E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis GN=rnf128 PE=2 SV=2[more]
BLAST of Cp4.1LG10g01110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KM08_CUCSA4.1e-7389.74Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501220 PE=4 SV=1[more]
A0A061DI69_THECC1.9e-5468.15RING-H2 zinc finger protein RHA2a OS=Theobroma cacao GN=TCM_001205 PE=4 SV=1[more]
A0A0D2QDA2_GOSRA1.1e-5265.41Uncharacterized protein OS=Gossypium raimondii GN=B456_003G045800 PE=4 SV=1[more]
M5WD85_PRUPE3.1e-5262.66Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012579mg PE=4 SV=1[more]
B9H581_POPTR9.9e-5163.06Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s08300g PE=4 SV=2[more]
BLAST of Cp4.1LG10g01110 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G15100.11.0e-1456.14 RING-H2 finger A2A[more]
AT2G04240.11.7e-1438.64 RING/U-box superfamily protein[more]
AT2G01150.15.1e-1437.50 RING-H2 finger protein 2B[more]
AT3G19950.13.3e-1345.45 RING/U-box superfamily protein[more]
AT3G61460.12.8e-1244.74 brassinosteroid-responsive RING-H2[more]
BLAST of Cp4.1LG10g01110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659080170|ref|XP_008440648.1|9.2e-7492.21PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis melo][more]
gi|700193577|gb|KGN48781.1|5.9e-7389.74hypothetical protein Csa_6G501220 [Cucumis sativus][more]
gi|470132684|ref|XP_004302206.1|2.8e-5464.56PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Fragaria vesca subsp. ve... [more]
gi|590707663|ref|XP_007048067.1|2.8e-5468.15RING-H2 zinc finger protein RHA2a [Theobroma cacao][more]
gi|823140038|ref|XP_012469879.1|1.5e-5265.41PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g01110.1Cp4.1LG10g01110.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 102..146
score: 1.6
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 104..145
score: 2.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 104..146
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 99..149
score: 1.8
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 88..171
score: 6.7
NoneNo IPR availablePANTHERPTHR14155:SF175E3 UBIQUITIN-PROTEIN LIGASE RHA2B-RELATEDcoord: 88..171
score: 6.7
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 93..152
score: 1.18

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g01110Cucsa.104680Cucumber (Gy14) v1cgycpeB0211
Cp4.1LG10g01110CmaCh03G007910Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g01110CmaCh07G005200Cucurbita maxima (Rimu)cmacpeB866
Cp4.1LG10g01110CmoCh07G005150Cucurbita moschata (Rifu)cmocpeB806
Cp4.1LG10g01110CmoCh03G008250Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g01110Cla014172Watermelon (97103) v1cpewmB073
Cp4.1LG10g01110Csa6G501220Cucumber (Chinese Long) v2cpecuB085
Cp4.1LG10g01110MELO3C007785Melon (DHL92) v3.5.1cpemeB060
Cp4.1LG10g01110ClCG01G019070Watermelon (Charleston Gray)cpewcgB061
Cp4.1LG10g01110CSPI06G30530Wild cucumber (PI 183967)cpecpiB080
Cp4.1LG10g01110Lsi01G007320Bottle gourd (USVL1VR-Ls)cpelsiB054
Cp4.1LG10g01110MELO3C007785.2Melon (DHL92) v3.6.1cpemedB080
Cp4.1LG10g01110CsaV3_6G045750Cucumber (Chinese Long) v3cpecucB0092
Cp4.1LG10g01110Bhi03G000946Wax gourdcpewgoB0084
Cp4.1LG10g01110CsGy6G030020Cucumber (Gy14) v2cgybcpeB710
Cp4.1LG10g01110Carg16020Silver-seed gourdcarcpeB1064
Cp4.1LG10g01110Carg00676Silver-seed gourdcarcpeB0554
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG10g01110Cp4.1LG19g09770Cucurbita pepo (Zucchini)cpecpeB076
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g01110Cucurbita pepo (Zucchini)cpecpeB065
Cp4.1LG10g01110Cucurbita pepo (Zucchini)cpecpeB073
Cp4.1LG10g01110Cucurbita maxima (Rimu)cmacpeB702
Cp4.1LG10g01110Cucurbita moschata (Rifu)cmocpeB655
Cp4.1LG10g01110Melon (DHL92) v3.6.1cpemedB079
Cp4.1LG10g01110Silver-seed gourdcarcpeB1300
Cp4.1LG10g01110Silver-seed gourdcarcpeB1413