CmaCh07G005200 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh07G005200
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRING/U-box superfamily protein
LocationCma_Chr07 : 2245525 .. 2246761 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGTAAAAAATTGGAAGAATTGGAATCTATCTGTCAATCTCTATCTGGGCAGCCATGGGAGCTCTCTCCGAGTTTTTCTCCCACCTCCACACAATGACCGCCTTCTTCACCACCCTGTTAATTCTCGAACTAGTTATTCTCGTTCGCACGATCTTCGGCTTGAGGCCTAACGGTGACAAGCGCGTGATTCCGACGGCGCAGTTTTTGAAACTGATCGAGGAGAAGAATCCGACGATTCGCTTCTCCAATAAGATTACCTCTAGTCCCGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTCGAGGAAGGGGAGAAGGTACGGAAATTGCAGTGTAACCACACTTTTCACAAGGATTGCCTTGATAATTGGCTGAAACTCTGTTTCGCTACGTGTCCGCTTTGCCGGAGGAAGGTTTTGCCGGACGATATTGTCGCCGGCTATCACAGGCTGCGGGACCGTGTAGAGTACGACGGGAGCGACGAGGAGCTCATCTTTTTGTTATCAGCATTACATGGTAACAGTATATACAGATTTTTCTAGGGAGAAATATAATTTCATTTTGTCCATCACAGAAAATAATCAAATAACATAGGATGTTGATTTTGTGTAGATTAACTAATGAATATTGTTTTCTTCTTGAAACTTGACGAGCAATAGCGTTAGGTAACAGCTCGCTTCTGGTTCGATTGATCTGTTGTTAGATCGAGTAAAATCGTGTATGTTTCTGTTTACCTGTAGTTACTCCAGCCAACTGTTTGATGCTTTGTTTGCTTGATTGCTTCCTACTTTTCCTGGTTCTTCGTCAACGAATCATTAATTTTAGGGACAATCAATTTACATCTTGTCGAGCACCTTTGTTCCAAAACACATTGAAATCCGCTCTAAATCATCCAAATCACAGCAACTTTTCTCCACCAGGAAGTTTACTTAGGCTAATCCAAAGGATCTTTCGAAAAATTGAAGACGTTAGTTAGATAATCCATTAGAGTCTCTTGTTATTGGGATTCCTTGGTACGTAGGGCCAGGACATATAGTTATAGTAGATGTGAGTTGGTGGACTAATTTATGGTGCTCTTACGAGGTAACTAAAGTGGTACATGACAGCATTTATTAAGAACATATAGTGATTAGGAAGAGGAAGTTCATCCAAGTTTAACAGAGTTTCCCTTGATATTTGCATGTGATTTGGGTGGATATGGTAGGAGGACTAAATGCACTGTTGGTGGGCAGCAATTAA

mRNA sequence

GAGTAAAAAATTGGAAGAATTGGAATCTATCTGTCAATCTCTATCTGGGCAGCCATGGGAGCTCTCTCCGAGTTTTTCTCCCACCTCCACACAATGACCGCCTTCTTCACCACCCTGTTAATTCTCGAACTAGTTATTCTCGTTCGCACGATCTTCGGCTTGAGGCCTAACGGTGACAAGCGCGTGATTCCGACGGCGCAGTTTTTGAAACTGATCGAGGAGAAGAATCCGACGATTCGCTTCTCCAATAAGATTACCTCTAGTCCCGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTCGAGGAAGGGGAGAAGGTACGGAAATTGCAGTGTAACCACACTTTTCACAAGGATTGCCTTGATAATTGGCTGAAACTCTGTTTCGCTACGTGTCCGCTTTGCCGGAGGAAGGTTTTGCCGGACGATATTGTCGCCGGCTATCACAGGCTGCGGGACCGTGTAGAGTACGACGGGAGCGACGAGGAGCTCATCTTTTTGTTATCAGCATTACATGGAGGACTAAATGCACTGTTGGTGGGCAGCAATTAA

Coding sequence (CDS)

ATGGGAGCTCTCTCCGAGTTTTTCTCCCACCTCCACACAATGACCGCCTTCTTCACCACCCTGTTAATTCTCGAACTAGTTATTCTCGTTCGCACGATCTTCGGCTTGAGGCCTAACGGTGACAAGCGCGTGATTCCGACGGCGCAGTTTTTGAAACTGATCGAGGAGAAGAATCCGACGATTCGCTTCTCCAATAAGATTACCTCTAGTCCCGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTCGAGGAAGGGGAGAAGGTACGGAAATTGCAGTGTAACCACACTTTTCACAAGGATTGCCTTGATAATTGGCTGAAACTCTGTTTCGCTACGTGTCCGCTTTGCCGGAGGAAGGTTTTGCCGGACGATATTGTCGCCGGCTATCACAGGCTGCGGGACCGTGTAGAGTACGACGGGAGCGACGAGGAGCTCATCTTTTTGTTATCAGCATTACATGGAGGACTAAATGCACTGTTGGTGGGCAGCAATTAA

Protein sequence

MGALSEFFSHLHTMTAFFTTLLILELVILVRTIFGLRPNGDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRRKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGGLNALLVGSN
Homology
[Close]
BLAST of CmaCh07G005200 vs. Swiss-Prot
Match: RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 5.5e-14
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 1 

Query: 24  LELVILVRTIFG------LRPNGDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAV 83
           L L+ L+ T F       L P+    V+ T+    L ++ N    FS + + + A  C V
Sbjct: 17  LMLLALLATFFRHVRSLLLFPSSAPVVVVTSNLSVLADQLNLNRLFSYRYSDNAASDCIV 76

Query: 84  CLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRRKVLP 123
           CLS+ + GE+VRKL C H FHK CL+ WL+     CPLCR  +LP
Sbjct: 77  CLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

[Close]
BLAST of CmaCh07G005200 vs. Swiss-Prot
Match: RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-12
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1 

Query: 75  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRRKVLPDDIVAGYHR 132
           C VCLS+ +EGE+VRKL+C H FHK CL+ WL     TCPLCR  ++ DD V+   R
Sbjct: 86  CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQR 142

[Close]
BLAST of CmaCh07G005200 vs. Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-12
Identity = 33/88 (37.50%), Postives = 51/88 (57.95%), Query Frame = 1 

Query: 41  DKRVIPTAQFLKLIEEKNPTIRFSN--KITSSPADQCAVCLSEFEEGEKVRKLQCNHTFH 100
           D RV     +L+    + PT+RF +  +      ++C+VCLS+F+   ++ KL+C H FH
Sbjct: 67  DFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLKCGHLFH 126

Query: 101 KDCLDNWLKLCFATCPLCRRK--VLPDD 125
           K CL+ W+     TCPLCR    V+P+D
Sbjct: 127 KTCLEKWIDYWNITCPLCRTPLVVVPED 154

[Close]
BLAST of CmaCh07G005200 vs. Swiss-Prot
Match: RHA1B_ARATH (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.0e-12
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 1 

Query: 53  LIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKL-QCNHTFHKDCLDNWLKLC-F 112
           L  E  P +RFS+ +T  P D C VCLS+F   +K+R+L +C H FH  CLD W+  C  
Sbjct: 64  LANELIPVVRFSDLLTD-PEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNK 123

Query: 113 ATCPLCRRKVLPDD 125
            TCP+CR + LP++
Sbjct: 124 ITCPICRNRFLPEE 136

[Close]
BLAST of CmaCh07G005200 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.8e-12
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 1 

Query: 59  PTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRR 118
           PT++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR 
Sbjct: 200 PTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLEL-HNSCPVCRF 259

Query: 119 KVLPDD 125
           ++  DD
Sbjct: 260 ELPTDD 264

[Close]
BLAST of CmaCh07G005200 vs. TrEMBL
Match: A0A0A0KM08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501220 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.2e-76
Identity = 141/154 (91.56%), Postives = 145/154 (94.16%), Query Frame = 1 

Query: 1   MGALSEFFSHLHTMTAFFTTLLILELVILVRTIFGLRPNGDKRVIPTAQFLKLIEEKNPT 60
           MGALSEFFSHLHTMTA F TLL+LE VIL+RTIFGLRPN DKRVI TAQF KLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60

Query: 61  IRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRRKV 120
           IRFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCR KV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 155
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 154

[Close]
BLAST of CmaCh07G005200 vs. TrEMBL
Match: A0A061DI69_THECC (RING-H2 zinc finger protein RHA2a OS=Theobroma cacao GN=TCM_001205 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.0e-54
Identity = 105/155 (67.74%), Postives = 132/155 (85.16%), Query Frame = 1 

Query: 1   MGALSEFFSHLHTMTAFFTTLLILELVILVRTIFGLRPNGDKRVIPTAQFLKLIEEKNPT 60
           M ALSE+FSHL+TMT  F TLL+LE+VIL+R++ G   + +KR+I T Q+LK IEEKNPT
Sbjct: 1   MAALSEYFSHLYTMTIVFFTLLLLEVVILIRSVTGGVCDSEKRLITTTQYLKFIEEKNPT 60

Query: 61  IRFSNKITSS-PADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRRK 120
           +R+S++ +S   +++CAVCLSE EEGE+VRKL+C HTFHKDCLD WL+  +ATCPLCR K
Sbjct: 61  VRYSSRSSSRLESNECAVCLSELEEGEEVRKLKCKHTFHKDCLDRWLQQYWATCPLCRTK 120

Query: 121 VLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 155
           VLPD+IVA YHRL++RVEYDGSDEE+IFLLSALHG
Sbjct: 121 VLPDEIVANYHRLQNRVEYDGSDEEMIFLLSALHG 155

[Close]
BLAST of CmaCh07G005200 vs. TrEMBL
Match: M5WD85_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012579mg PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.8e-54
Identity = 104/156 (66.67%), Postives = 130/156 (83.33%), Query Frame = 1 

Query: 1   MGALSEFFSHLHTMTAFFTTLLILELVILVRTIFGLRPNGDKRVIPTAQFLKLIEEKNPT 60
           MGALS+FFSHL+T+T  F TLLILE+VILVR+I GL PN  KRVI T Q+LKLIE+KNPT
Sbjct: 1   MGALSQFFSHLYTITLIFFTLLILEIVILVRSIAGLNPNSSKRVITTTQYLKLIEQKNPT 60

Query: 61  IRFSNKITS--SPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRR 120
             ++ K+ S    A +C+VCLS+FEEG+K+R+L+C HTFH++CLD WL+  +ATCPLCR 
Sbjct: 61  TCYTQKLRSVRPEATECSVCLSDFEEGDKIRQLKCKHTFHQNCLDRWLQQYWATCPLCRT 120

Query: 121 KVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 155
           KVL DD+VA YHRLR++V+YDGSDEELIFLLS+L G
Sbjct: 121 KVLSDDVVASYHRLRNQVQYDGSDEELIFLLSSLQG 156

[Close]
BLAST of CmaCh07G005200 vs. TrEMBL
Match: A0A0D2QDA2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G045800 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.6e-52
Identity = 101/156 (64.74%), Postives = 127/156 (81.41%), Query Frame = 1 

Query: 1   MGALSEFFSHLHTMTAFFTTLLILELVILVRTIFGLRPNGDKRVIPTAQFLKLIEEKNPT 60
           M AL+EFFSHL+TMT  F TLL+LE+ IL+R++ G   + +KR+I T Q+LK IEEKNPT
Sbjct: 1   MAALTEFFSHLYTMTVVFFTLLLLEVAILIRSLTGGLSDSEKRLITTTQYLKFIEEKNPT 60

Query: 61  IRFSNKITSS---PADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCR 120
           I +S + +S     +++C VCLSE EEGEKVRKL+C HTFHKDCLD WL+  +ATCPLCR
Sbjct: 61  IIYSTRSSSRVDLSSNECTVCLSELEEGEKVRKLKCKHTFHKDCLDRWLQQYWATCPLCR 120

Query: 121 RKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH 154
            KVLPD++VA YHRL+++VEYDGSDEE+IFLLSALH
Sbjct: 121 TKVLPDEVVANYHRLQNQVEYDGSDEEMIFLLSALH 156

[Close]
BLAST of CmaCh07G005200 vs. TrEMBL
Match: B9H581_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s08300g PE=4 SV=2)

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-50
Identity = 96/155 (61.94%), Postives = 122/155 (78.71%), Query Frame = 1 

Query: 1   MGALSEFFSHLHTMTAFFTTLLILELVILVRTIFGLRPNGDKRVIPTAQFLKLIEEKNPT 60
           M +LSEFFSHL+TM   F +LL+LE+VIL+R++ G     DK +I T Q+L+ IEEKNPT
Sbjct: 1   MASLSEFFSHLYTMAIVFLSLLLLEIVILIRSVIGSTLKSDKPIISTTQYLRHIEEKNPT 60

Query: 61  IRFSNKIT-SSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRRK 120
           I +S ++     + +CAVCLSEF EGE VRKL+C HTFHKDCLD WL+ C ATCPLCR K
Sbjct: 61  ISYSKQLMRQQDSIECAVCLSEFSEGESVRKLKCKHTFHKDCLDEWLQQCLATCPLCRAK 120

Query: 121 VLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 155
           VLPD+I+A Y R++ ++EYDGSDEE+IF+LSALHG
Sbjct: 121 VLPDEILAKYDRMQSQIEYDGSDEEMIFMLSALHG 155

[Close]
BLAST of CmaCh07G005200 vs. TAIR10
Match: AT2G01150.1 (AT2G01150.1 RING-H2 finger protein 2B)

HSP 1 Score: 79.0 bits (193), Expect = 3.1e-15
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 1 

Query: 24  LELVILVRTIFG------LRPNGDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAV 83
           L L+ L+ T F       L P+    V+ T+    L ++ N    FS + + + A  C V
Sbjct: 17  LMLLALLATFFRHVRSLLLFPSSAPVVVVTSNLSVLADQLNLNRLFSYRYSDNAASDCIV 76

Query: 84  CLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRRKVLP 123
           CLS+ + GE+VRKL C H FHK CL+ WL+     CPLCR  +LP
Sbjct: 77  CLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

[Close]
BLAST of CmaCh07G005200 vs. TAIR10
Match: AT1G15100.1 (AT1G15100.1 RING-H2 finger A2A)

HSP 1 Score: 74.7 bits (182), Expect = 5.9e-14
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1 

Query: 75  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRRKVLPDDIVAGYHR 132
           C VCLS+ +EGE+VRKL+C H FHK CL+ WL     TCPLCR  ++ DD V+   R
Sbjct: 86  CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQR 142

[Close]
BLAST of CmaCh07G005200 vs. TAIR10
Match: AT2G04240.1 (AT2G04240.1 RING/U-box superfamily protein)

HSP 1 Score: 74.3 bits (181), Expect = 7.7e-14
Identity = 33/88 (37.50%), Postives = 51/88 (57.95%), Query Frame = 1 

Query: 41  DKRVIPTAQFLKLIEEKNPTIRFSN--KITSSPADQCAVCLSEFEEGEKVRKLQCNHTFH 100
           D RV     +L+    + PT+RF +  +      ++C+VCLS+F+   ++ KL+C H FH
Sbjct: 67  DFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLKCGHLFH 126

Query: 101 KDCLDNWLKLCFATCPLCRRK--VLPDD 125
           K CL+ W+     TCPLCR    V+P+D
Sbjct: 127 KTCLEKWIDYWNITCPLCRTPLVVVPED 154

[Close]
BLAST of CmaCh07G005200 vs. TAIR10
Match: AT4G11360.1 (AT4G11360.1 RING-H2 finger A1B)

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-13
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 1 

Query: 53  LIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKL-QCNHTFHKDCLDNWLKLC-F 112
           L  E  P +RFS+ +T  P D C VCLS+F   +K+R+L +C H FH  CLD W+  C  
Sbjct: 64  LANELIPVVRFSDLLTD-PEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNK 123

Query: 113 ATCPLCRRKVLPDD 125
            TCP+CR + LP++
Sbjct: 124 ITCPICRNRFLPEE 136

[Close]
BLAST of CmaCh07G005200 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 72.0 bits (175), Expect = 3.8e-13
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 1 

Query: 59  PTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRR 118
           PT++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR 
Sbjct: 200 PTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLEL-HNSCPVCRF 259

Query: 119 KVLPDD 125
           ++  DD
Sbjct: 260 ELPTDD 264

[Close]
BLAST of CmaCh07G005200 vs. NCBI nr
Match: gi|700193577|gb|KGN48781.1| (hypothetical protein Csa_6G501220 [Cucumis sativus])

HSP 1 Score: 293.9 bits (751), Expect = 1.7e-76
Identity = 141/154 (91.56%), Postives = 145/154 (94.16%), Query Frame = 1 

Query: 1   MGALSEFFSHLHTMTAFFTTLLILELVILVRTIFGLRPNGDKRVIPTAQFLKLIEEKNPT 60
           MGALSEFFSHLHTMTA F TLL+LE VIL+RTIFGLRPN DKRVI TAQF KLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60

Query: 61  IRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRRKV 120
           IRFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCR KV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 155
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 154

[Close]
BLAST of CmaCh07G005200 vs. NCBI nr
Match: gi|659080170|ref|XP_008440648.1| (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis melo])

HSP 1 Score: 293.1 bits (749), Expect = 3.0e-76
Identity = 141/153 (92.16%), Postives = 145/153 (94.77%), Query Frame = 1 

Query: 1   MGALSEFFSHLHTMTAFFTTLLILELVILVRTIFGLRPNGDKRVIPTAQFLKLIEEKNPT 60
           MGALSEFFSHLHTMTA F TLL+LE VIL+RTIFGLRPN DKRVI TAQFLKLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60

Query: 61  IRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRRKV 120
           IRFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCR KV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH 154
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH 153

[Close]
BLAST of CmaCh07G005200 vs. NCBI nr
Match: gi|590707663|ref|XP_007048067.1| (RING-H2 zinc finger protein RHA2a [Theobroma cacao])

HSP 1 Score: 221.1 bits (562), Expect = 1.4e-54
Identity = 105/155 (67.74%), Postives = 132/155 (85.16%), Query Frame = 1 

Query: 1   MGALSEFFSHLHTMTAFFTTLLILELVILVRTIFGLRPNGDKRVIPTAQFLKLIEEKNPT 60
           M ALSE+FSHL+TMT  F TLL+LE+VIL+R++ G   + +KR+I T Q+LK IEEKNPT
Sbjct: 1   MAALSEYFSHLYTMTIVFFTLLLLEVVILIRSVTGGVCDSEKRLITTTQYLKFIEEKNPT 60

Query: 61  IRFSNKITSS-PADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRRK 120
           +R+S++ +S   +++CAVCLSE EEGE+VRKL+C HTFHKDCLD WL+  +ATCPLCR K
Sbjct: 61  VRYSSRSSSRLESNECAVCLSELEEGEEVRKLKCKHTFHKDCLDRWLQQYWATCPLCRTK 120

Query: 121 VLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 155
           VLPD+IVA YHRL++RVEYDGSDEE+IFLLSALHG
Sbjct: 121 VLPDEIVANYHRLQNRVEYDGSDEEMIFLLSALHG 155

[Close]
BLAST of CmaCh07G005200 vs. NCBI nr
Match: gi|470132684|ref|XP_004302206.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Fragaria vesca subsp. vesca])

HSP 1 Score: 220.7 bits (561), Expect = 1.9e-54
Identity = 103/156 (66.03%), Postives = 132/156 (84.62%), Query Frame = 1 

Query: 1   MGALSEFFSHLHTMTAFFTTLLILELVILVRTIFGLRPNGDKRVIPTAQFLKLIEEKNPT 60
           MGALS+FFSHL+T++  F TL  LE+VILVR+I GL+PN +KRVI TAQ+LKLI++KNPT
Sbjct: 1   MGALSQFFSHLYTISIIFFTLFALEVVILVRSITGLKPNSEKRVITTAQYLKLIDQKNPT 60

Query: 61  IRFSNKITS--SPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRR 120
           + +S+K  +     ++C+VCLSEFEEGEK+R+L+C H FHKDC+D WL+  +ATCPLCR 
Sbjct: 61  VSYSSKKKNLLRAHEECSVCLSEFEEGEKIRQLKCKHRFHKDCVDKWLQQYWATCPLCRT 120

Query: 121 KVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 155
           KV+PDD+VA YHRLR++VEYDGSDEELIFLLS+L G
Sbjct: 121 KVVPDDVVASYHRLRNQVEYDGSDEELIFLLSSLQG 156

[Close]
BLAST of CmaCh07G005200 vs. NCBI nr
Match: gi|645303061|ref|XP_008245902.1| (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Prunus mume])

HSP 1 Score: 220.3 bits (560), Expect = 2.5e-54
Identity = 105/156 (67.31%), Postives = 130/156 (83.33%), Query Frame = 1 

Query: 1   MGALSEFFSHLHTMTAFFTTLLILELVILVRTIFGLRPNGDKRVIPTAQFLKLIEEKNPT 60
           MGALS+FFSHL+T+T  F TLLILE+VILVR+I GL PN  KRVI T Q+LKLIE+KNPT
Sbjct: 1   MGALSQFFSHLYTITLIFFTLLILEIVILVRSIAGLNPNSSKRVITTTQYLKLIEQKNPT 60

Query: 61  IRFSNKITS--SPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRR 120
             ++ K+ S    A +C+VCLSEFEEG+K+R+L+C HTFH++CLD WL+  +ATCPLCR 
Sbjct: 61  TCYTQKLRSVRPEATECSVCLSEFEEGDKIRQLKCKHTFHQNCLDRWLQQYWATCPLCRT 120

Query: 121 KVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 155
           KVL DD+VA YHRLR++V+YDGSDEELIFLLS+L G
Sbjct: 121 KVLSDDVVASYHRLRNQVQYDGSDEELIFLLSSLQG 156

The following BLAST results are available for this feature:
BLAST of CmaCh07G005200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RHA2B_ARATH5.5e-1439.05E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2[more]
RHA2A_ARATH1.0e-1254.39E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1[more]
XERIC_ARATH1.4e-1237.50Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE... [more]
RHA1B_ARATH3.0e-1245.95E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1[more]
RNG1L_ARATH6.8e-1243.94E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
BLAST of CmaCh07G005200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KM08_CUCSA1.2e-7691.56Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501220 PE=4 SV=1[more]
A0A061DI69_THECC1.0e-5467.74RING-H2 zinc finger protein RHA2a OS=Theobroma cacao GN=TCM_001205 PE=4 SV=1[more]
M5WD85_PRUPE3.8e-5466.67Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012579mg PE=4 SV=1[more]
A0A0D2QDA2_GOSRA3.6e-5264.74Uncharacterized protein OS=Gossypium raimondii GN=B456_003G045800 PE=4 SV=1[more]
B9H581_POPTR1.1e-5061.94Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s08300g PE=4 SV=2[more]
BLAST of CmaCh07G005200 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G01150.13.1e-1539.05 RING-H2 finger protein 2B[more]
AT1G15100.15.9e-1454.39 RING-H2 finger A2A[more]
AT2G04240.17.7e-1437.50 RING/U-box superfamily protein[more]
AT4G11360.11.7e-1345.95 RING-H2 finger A1B[more]
AT3G19950.13.8e-1343.94 RING/U-box superfamily protein[more]
BLAST of CmaCh07G005200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193577|gb|KGN48781.1|1.7e-7691.56hypothetical protein Csa_6G501220 [Cucumis sativus][more]
gi|659080170|ref|XP_008440648.1|3.0e-7692.16PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis melo][more]
gi|590707663|ref|XP_007048067.1|1.4e-5467.74RING-H2 zinc finger protein RHA2a [Theobroma cacao][more]
gi|470132684|ref|XP_004302206.1|1.9e-5466.03PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Fragaria vesca subsp. ve... [more]
gi|645303061|ref|XP_008245902.1|2.5e-5467.31PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G005200.1CmaCh07G005200.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 73..117
score: 1.4
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 75..116
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 75..117
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 72..120
score: 3.8
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 59..142
score: 8.0
NoneNo IPR availablePANTHERPTHR14155:SF175E3 UBIQUITIN-PROTEIN LIGASE RHA2B-RELATEDcoord: 59..142
score: 8.0
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 74..123
score: 7.07

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh07G005200Cucsa.104680Cucumber (Gy14) v1cgycmaB0235
CmaCh07G005200Cla014172Watermelon (97103) v1cmawmB826
CmaCh07G005200Csa6G501220Cucumber (Chinese Long) v2cmacuB877
CmaCh07G005200MELO3C007785Melon (DHL92) v3.5.1cmameB809
CmaCh07G005200ClCG01G019070Watermelon (Charleston Gray)cmawcgB754
CmaCh07G005200CSPI06G30530Wild cucumber (PI 183967)cmacpiB893
CmaCh07G005200CmoCh07G005150Cucurbita moschata (Rifu)cmacmoB875
CmaCh07G005200CmoCh03G008250Cucurbita moschata (Rifu)cmacmoB858
CmaCh07G005200Lsi01G007320Bottle gourd (USVL1VR-Ls)cmalsiB786
CmaCh07G005200Cp4.1LG10g01110Cucurbita pepo (Zucchini)cmacpeB866
CmaCh07G005200Cp4.1LG19g09770Cucurbita pepo (Zucchini)cmacpeB880
CmaCh07G005200MELO3C007785.2Melon (DHL92) v3.6.1cmamedB907
CmaCh07G005200CsaV3_6G045750Cucumber (Chinese Long) v3cmacucB1035
CmaCh07G005200Cla97C01G018530Watermelon (97103) v2cmawmbB875
CmaCh07G005200Bhi03G000946Wax gourdcmawgoB1072
CmaCh07G005200CsGy6G030020Cucumber (Gy14) v2cgybcmaB861
CmaCh07G005200Carg16020Silver-seed gourdcarcmaB1056
CmaCh07G005200Carg00676Silver-seed gourdcarcmaB0571
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh07G005200CmaCh03G007910Cucurbita maxima (Rimu)cmacmaB523
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh07G005200Silver-seed gourdcarcmaB1289
CmaCh07G005200Silver-seed gourdcarcmaB1415
CmaCh07G005200Cucurbita maxima (Rimu)cmacmaB546
CmaCh07G005200Melon (DHL92) v3.5.1cmameB796
CmaCh07G005200Cucurbita pepo (Zucchini)cmacpeB876