CmoCh07G005150 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G005150
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RING/U-box superfamily protein, putative
Location	Cmo_Chr07 : 2347362 .. 2347847 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCTCTCTCCGAGTTTTTCTCCCACCTCCACACAATGACCGCCGTCTTCTTCACCCTGTTAATTCTCGAGCTAGTTATTCTCGTTCGCACGATCTTCGGCTTGAGGCCTAACGTCGACAAGCGCGTGATTCCGACGGCGCAGTTTTTGAAACTGATCGAGGAGAAGAATCCGACGATTCGATTCTCCAATAAGATTACCTCCAGTCCCGCCGATCAGTGTGCAGTTTGCCTCTCTGAATTCGAGGAAGGGGAGAAGGTACGGAAATTGCAGTGTAACCACACTTTTCACAAGGATTGCCTTGATAATTGGCTGAAACTCTGTTTCGCTACGTGTCCGCTTTGCCGGAGTAAGGTTTTGCCGGACGATATTGTCGCCGGCTATCACAGGCTGCGGGACCGTGTAGAGTACGACGGAAGCGACGAGGAGCTCATCTTTTTGTTATCAGCATTACATGGTAATAGTATATACAGATTTTTCTAG

mRNA sequence

ATGGGAGCTCTCTCCGAGTTTTTCTCCCACCTCCACACAATGACCGCCGTCTTCTTCACCCTGTTAATTCTCGAGCTAGTTATTCTCGTTCGCACGATCTTCGGCTTGAGGCCTAACGTCGACAAGCGCGTGATTCCGACGGCGCAGTTTTTGAAACTGATCGAGGAGAAGAATCCGACGATTCGATTCTCCAATAAGATTACCTCCAGTCCCGCCGATCAGTGTGCAGTTTGCCTCTCTGAATTCGAGGAAGGGGAGAAGGTACGGAAATTGCAGTGTAACCACACTTTTCACAAGGATTGCCTTGATAATTGGCTGAAACTCTGTTTCGCTACGTGTCCGCTTTGCCGGAGTAAGGTTTTGCCGGACGATATTGTCGCCGGCTATCACAGGCTGCGGGACCGTGTAGAGTACGACGGAAGCGACGAGGAGCTCATCTTTTTGTTATCAGCATTACATGGTAATAGTATATACAGATTTTTCTAG

Coding sequence (CDS)

ATGGGAGCTCTCTCCGAGTTTTTCTCCCACCTCCACACAATGACCGCCGTCTTCTTCACCCTGTTAATTCTCGAGCTAGTTATTCTCGTTCGCACGATCTTCGGCTTGAGGCCTAACGTCGACAAGCGCGTGATTCCGACGGCGCAGTTTTTGAAACTGATCGAGGAGAAGAATCCGACGATTCGATTCTCCAATAAGATTACCTCCAGTCCCGCCGATCAGTGTGCAGTTTGCCTCTCTGAATTCGAGGAAGGGGAGAAGGTACGGAAATTGCAGTGTAACCACACTTTTCACAAGGATTGCCTTGATAATTGGCTGAAACTCTGTTTCGCTACGTGTCCGCTTTGCCGGAGTAAGGTTTTGCCGGACGATATTGTCGCCGGCTATCACAGGCTGCGGGACCGTGTAGAGTACGACGGAAGCGACGAGGAGCTCATCTTTTTGTTATCAGCATTACATGGTAATAGTATATACAGATTTTTCTAG

Homology

[Close]

BLAST of CmoCh07G005150 vs. Swiss-Prot
Match: RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 4.2e-14
Identity = 42/105 (40.00%), Postives = 58/105 (55.24%), Query Frame = 1


Query: 24  LELVILVRTIFG------LRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAV 83
           L L+ L+ T F       L P+    V+ T+    L ++ N    FS + + + A  C V
Sbjct: 17  LMLLALLATFFRHVRSLLLFPSSAPVVVVTSNLSVLADQLNLNRLFSYRYSDNAASDCIV 76

Query: 84  CLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP 123
           CLS+ + GE+VRKL C H FHK CL+ WL+     CPLCRS +LP
Sbjct: 77  CLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

[Close]

BLAST of CmoCh07G005150 vs. Swiss-Prot
Match: RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-13
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 75  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR 132
           C VCLS+ +EGE+VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V+   R
Sbjct: 86  CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQR 142

[Close]

BLAST of CmoCh07G005150 vs. Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.8e-13
Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = 1


Query: 41  DKRVIPTAQFLKLIEEKNPTIRFSN--KITSSPADQCAVCLSEFEEGEKVRKLQCNHTFH 100
           D RV     +L+    + PT+RF +  +      ++C+VCLS+F+   ++ KL+C H FH
Sbjct: 67  DFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLKCGHLFH 126

Query: 101 KDCLDNWLKLCFATCPLCRSK--VLPDD 125
           K CL+ W+     TCPLCR+   V+P+D
Sbjct: 127 KTCLEKWIDYWNITCPLCRTPLVVVPED 154

[Close]

BLAST of CmoCh07G005150 vs. Swiss-Prot
Match: RHA1B_ARATH (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-12
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 1


Query: 53  LIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKL-QCNHTFHKDCLDNWLKLC-F 112
           L  E  P +RFS+ +T  P D C VCLS+F   +K+R+L +C H FH  CLD W+  C  
Sbjct: 64  LANELIPVVRFSDLLTD-PEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNK 123

Query: 113 ATCPLCRSKVLPDD 125
            TCP+CR++ LP++
Sbjct: 124 ITCPICRNRFLPEE 136

[Close]

BLAST of CmoCh07G005150 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.1e-12
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 1


Query: 59  PTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRS 118
           PT++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR 
Sbjct: 200 PTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLEL-HNSCPVCRF 259

Query: 119 KVLPDD 125
           ++  DD
Sbjct: 260 ELPTDD 264

[Close]

BLAST of CmoCh07G005150 vs. TrEMBL
Match: A0A0A0KM08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501220 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.5e-82
Identity = 151/161 (93.79%), Postives = 155/161 (96.27%), Query Frame = 1


Query: 1   MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPT 60
           MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DKRVI TAQF KLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60

Query: 61  IRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 162
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 161

[Close]

BLAST of CmoCh07G005150 vs. TrEMBL
Match: A0A061DI69_THECC (RING-H2 zinc finger protein RHA2a OS=Theobroma cacao GN=TCM_001205 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.5e-58
Identity = 111/162 (68.52%), Postives = 141/162 (87.04%), Query Frame = 1


Query: 1   MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPT 60
           M ALSE+FSHL+TMT VFFTLL+LE+VIL+R++ G   + +KR+I T Q+LK IEEKNPT
Sbjct: 1   MAALSEYFSHLYTMTIVFFTLLLLEVVILIRSVTGGVCDSEKRLITTTQYLKFIEEKNPT 60

Query: 61  IRFSNKITSS-PADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSK 120
           +R+S++ +S   +++CAVCLSE EEGE+VRKL+C HTFHKDCLD WL+  +ATCPLCR+K
Sbjct: 61  VRYSSRSSSRLESNECAVCLSELEEGEEVRKLKCKHTFHKDCLDRWLQQYWATCPLCRTK 120

Query: 121 VLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 162
           VLPD+IVA YHRL++RVEYDGSDEE+IFLLSALHGNS++R F
Sbjct: 121 VLPDEIVANYHRLQNRVEYDGSDEEMIFLLSALHGNSLHRLF 162

[Close]

BLAST of CmoCh07G005150 vs. TrEMBL
Match: M5WD85_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012579mg PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.9e-58
Identity = 110/163 (67.48%), Postives = 140/163 (85.89%), Query Frame = 1


Query: 1   MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPT 60
           MGALS+FFSHL+T+T +FFTLLILE+VILVR+I GL PN  KRVI T Q+LKLIE+KNPT
Sbjct: 1   MGALSQFFSHLYTITLIFFTLLILEIVILVRSIAGLNPNSSKRVITTTQYLKLIEQKNPT 60

Query: 61  IRFSNKITS--SPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRS 120
             ++ K+ S    A +C+VCLS+FEEG+K+R+L+C HTFH++CLD WL+  +ATCPLCR+
Sbjct: 61  TCYTQKLRSVRPEATECSVCLSDFEEGDKIRQLKCKHTFHQNCLDRWLQQYWATCPLCRT 120

Query: 121 KVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 162
           KVL DD+VA YHRLR++V+YDGSDEELIFLLS+L GNS++RFF
Sbjct: 121 KVLSDDVVASYHRLRNQVQYDGSDEELIFLLSSLQGNSLHRFF 163

[Close]

BLAST of CmoCh07G005150 vs. TrEMBL
Match: A0A0D2QDA2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G045800 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 6.8e-56
Identity = 107/164 (65.24%), Postives = 136/164 (82.93%), Query Frame = 1


Query: 1   MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPT 60
           M AL+EFFSHL+TMT VFFTLL+LE+ IL+R++ G   + +KR+I T Q+LK IEEKNPT
Sbjct: 1   MAALTEFFSHLYTMTVVFFTLLLLEVAILIRSLTGGLSDSEKRLITTTQYLKFIEEKNPT 60

Query: 61  IRFSNKITSS---PADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCR 120
           I +S + +S     +++C VCLSE EEGEKVRKL+C HTFHKDCLD WL+  +ATCPLCR
Sbjct: 61  IIYSTRSSSRVDLSSNECTVCLSELEEGEKVRKLKCKHTFHKDCLDRWLQQYWATCPLCR 120

Query: 121 SKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 162
           +KVLPD++VA YHRL+++VEYDGSDEE+IFLLSALH NS++R F
Sbjct: 121 TKVLPDEVVANYHRLQNQVEYDGSDEEMIFLLSALHDNSLHRLF 164

[Close]

BLAST of CmoCh07G005150 vs. TrEMBL
Match: B9H581_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s08300g PE=4 SV=2)

HSP 1 Score: 216.5 bits (550), Expect = 2.4e-53
Identity = 101/162 (62.35%), Postives = 129/162 (79.63%), Query Frame = 1


Query: 1   MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPT 60
           M +LSEFFSHL+TM  VF +LL+LE+VIL+R++ G     DK +I T Q+L+ IEEKNPT
Sbjct: 1   MASLSEFFSHLYTMAIVFLSLLLLEIVILIRSVIGSTLKSDKPIISTTQYLRHIEEKNPT 60

Query: 61  IRFSNKIT-SSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSK 120
           I +S ++     + +CAVCLSEF EGE VRKL+C HTFHKDCLD WL+ C ATCPLCR+K
Sbjct: 61  ISYSKQLMRQQDSIECAVCLSEFSEGESVRKLKCKHTFHKDCLDEWLQQCLATCPLCRAK 120

Query: 121 VLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 162
           VLPD+I+A Y R++ ++EYDGSDEE+IF+LSALHGNS+ R F
Sbjct: 121 VLPDEILAKYDRMQSQIEYDGSDEEMIFMLSALHGNSLQRIF 162

[Close]

BLAST of CmoCh07G005150 vs. TAIR10
Match: AT2G01150.1 (AT2G01150.1 RING-H2 finger protein 2B)

HSP 1 Score: 79.3 bits (194), Expect = 2.3e-15
Identity = 42/105 (40.00%), Postives = 58/105 (55.24%), Query Frame = 1


Query: 24  LELVILVRTIFG------LRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAV 83
           L L+ L+ T F       L P+    V+ T+    L ++ N    FS + + + A  C V
Sbjct: 17  LMLLALLATFFRHVRSLLLFPSSAPVVVVTSNLSVLADQLNLNRLFSYRYSDNAASDCIV 76

Query: 84  CLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP 123
           CLS+ + GE+VRKL C H FHK CL+ WL+     CPLCRS +LP
Sbjct: 77  CLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

[Close]

BLAST of CmoCh07G005150 vs. TAIR10
Match: AT1G15100.1 (AT1G15100.1 RING-H2 finger A2A)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-14
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 75  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR 132
           C VCLS+ +EGE+VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V+   R
Sbjct: 86  CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQR 142

[Close]

BLAST of CmoCh07G005150 vs. TAIR10
Match: AT2G04240.1 (AT2G04240.1 RING/U-box superfamily protein)

HSP 1 Score: 75.1 bits (183), Expect = 4.4e-14
Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = 1


Query: 41  DKRVIPTAQFLKLIEEKNPTIRFSN--KITSSPADQCAVCLSEFEEGEKVRKLQCNHTFH 100
           D RV     +L+    + PT+RF +  +      ++C+VCLS+F+   ++ KL+C H FH
Sbjct: 67  DFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLKCGHLFH 126

Query: 101 KDCLDNWLKLCFATCPLCRSK--VLPDD 125
           K CL+ W+     TCPLCR+   V+P+D
Sbjct: 127 KTCLEKWIDYWNITCPLCRTPLVVVPED 154

[Close]

BLAST of CmoCh07G005150 vs. TAIR10
Match: AT4G11360.1 (AT4G11360.1 RING-H2 finger A1B)

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-13
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 1


Query: 53  LIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKL-QCNHTFHKDCLDNWLKLC-F 112
           L  E  P +RFS+ +T  P D C VCLS+F   +K+R+L +C H FH  CLD W+  C  
Sbjct: 64  LANELIPVVRFSDLLTD-PEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNK 123

Query: 113 ATCPLCRSKVLPDD 125
            TCP+CR++ LP++
Sbjct: 124 ITCPICRNRFLPEE 136

[Close]

BLAST of CmoCh07G005150 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-13
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 1


Query: 59  PTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRS 118
           PT++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR 
Sbjct: 200 PTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLEL-HNSCPVCRF 259

Query: 119 KVLPDD 125
           ++  DD
Sbjct: 260 ELPTDD 264

[Close]

BLAST of CmoCh07G005150 vs. NCBI nr
Match: gi|700193577|gb|KGN48781.1| (hypothetical protein Csa_6G501220 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 3.6e-82
Identity = 151/161 (93.79%), Postives = 155/161 (96.27%), Query Frame = 1


Query: 1   MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPT 60
           MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DKRVI TAQF KLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60

Query: 61  IRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 162
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 161

[Close]

BLAST of CmoCh07G005150 vs. NCBI nr
Match: gi|659080170|ref|XP_008440648.1| (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis melo])

HSP 1 Score: 298.5 bits (763), Expect = 7.0e-78
Identity = 144/153 (94.12%), Postives = 148/153 (96.73%), Query Frame = 1


Query: 1   MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPT 60
           MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DKRVI TAQFLKLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60

Query: 61  IRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH 154
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH 153

[Close]

BLAST of CmoCh07G005150 vs. NCBI nr
Match: gi|645303061|ref|XP_008245902.1| (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Prunus mume])

HSP 1 Score: 234.6 bits (597), Expect = 1.2e-58
Identity = 111/163 (68.10%), Postives = 140/163 (85.89%), Query Frame = 1


Query: 1   MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPT 60
           MGALS+FFSHL+T+T +FFTLLILE+VILVR+I GL PN  KRVI T Q+LKLIE+KNPT
Sbjct: 1   MGALSQFFSHLYTITLIFFTLLILEIVILVRSIAGLNPNSSKRVITTTQYLKLIEQKNPT 60

Query: 61  IRFSNKITS--SPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRS 120
             ++ K+ S    A +C+VCLSEFEEG+K+R+L+C HTFH++CLD WL+  +ATCPLCR+
Sbjct: 61  TCYTQKLRSVRPEATECSVCLSEFEEGDKIRQLKCKHTFHQNCLDRWLQQYWATCPLCRT 120

Query: 121 KVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 162
           KVL DD+VA YHRLR++V+YDGSDEELIFLLS+L GNS++RFF
Sbjct: 121 KVLSDDVVASYHRLRNQVQYDGSDEELIFLLSSLQGNSLHRFF 163

[Close]

BLAST of CmoCh07G005150 vs. NCBI nr
Match: gi|590707663|ref|XP_007048067.1| (RING-H2 zinc finger protein RHA2a [Theobroma cacao])

HSP 1 Score: 233.8 bits (595), Expect = 2.1e-58
Identity = 111/162 (68.52%), Postives = 141/162 (87.04%), Query Frame = 1


Query: 1   MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPT 60
           M ALSE+FSHL+TMT VFFTLL+LE+VIL+R++ G   + +KR+I T Q+LK IEEKNPT
Sbjct: 1   MAALSEYFSHLYTMTIVFFTLLLLEVVILIRSVTGGVCDSEKRLITTTQYLKFIEEKNPT 60

Query: 61  IRFSNKITSS-PADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSK 120
           +R+S++ +S   +++CAVCLSE EEGE+VRKL+C HTFHKDCLD WL+  +ATCPLCR+K
Sbjct: 61  VRYSSRSSSRLESNECAVCLSELEEGEEVRKLKCKHTFHKDCLDRWLQQYWATCPLCRTK 120

Query: 121 VLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 162
           VLPD+IVA YHRL++RVEYDGSDEE+IFLLSALHGNS++R F
Sbjct: 121 VLPDEIVANYHRLQNRVEYDGSDEEMIFLLSALHGNSLHRLF 162

[Close]

BLAST of CmoCh07G005150 vs. NCBI nr
Match: gi|595830307|ref|XP_007206044.1| (hypothetical protein PRUPE_ppa012579mg [Prunus persica])

HSP 1 Score: 233.4 bits (594), Expect = 2.8e-58
Identity = 110/163 (67.48%), Postives = 140/163 (85.89%), Query Frame = 1


Query: 1   MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPT 60
           MGALS+FFSHL+T+T +FFTLLILE+VILVR+I GL PN  KRVI T Q+LKLIE+KNPT
Sbjct: 1   MGALSQFFSHLYTITLIFFTLLILEIVILVRSIAGLNPNSSKRVITTTQYLKLIEQKNPT 60

Query: 61  IRFSNKITS--SPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRS 120
             ++ K+ S    A +C+VCLS+FEEG+K+R+L+C HTFH++CLD WL+  +ATCPLCR+
Sbjct: 61  TCYTQKLRSVRPEATECSVCLSDFEEGDKIRQLKCKHTFHQNCLDRWLQQYWATCPLCRT 120

Query: 121 KVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF 162
           KVL DD+VA YHRLR++V+YDGSDEELIFLLS+L GNS++RFF
Sbjct: 121 KVLSDDVVASYHRLRNQVQYDGSDEELIFLLSSLQGNSLHRFF 163

The following BLAST results are available for this feature:

BLAST of CmoCh07G005150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RHA2B_ARATH	4.2e-14	40.00	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2	[more]
RHA2A_ARATH	2.1e-13	56.14	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1	[more]
XERIC_ARATH	7.8e-13	37.50	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE...	[more]
RHA1B_ARATH	2.3e-12	45.95	E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1	[more]
RNG1L_ARATH	5.1e-12	43.94	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1...	[more]

BLAST of CmoCh07G005150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM08_CUCSA	2.5e-82	93.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501220 PE=4 SV=1	[more]
A0A061DI69_THECC	1.5e-58	68.52	RING-H2 zinc finger protein RHA2a OS=Theobroma cacao GN=TCM_001205 PE=4 SV=1	[more]
M5WD85_PRUPE	1.9e-58	67.48	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012579mg PE=4 SV=1	[more]
A0A0D2QDA2_GOSRA	6.8e-56	65.24	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G045800 PE=4 SV=1	[more]
B9H581_POPTR	2.4e-53	62.35	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s08300g PE=4 SV=2	[more]

BLAST of CmoCh07G005150 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01150.1	2.3e-15	40.00	RING-H2 finger protein 2B	[more]
AT1G15100.1	1.2e-14	56.14	RING-H2 finger A2A	[more]
AT2G04240.1	4.4e-14	37.50	RING/U-box superfamily protein	[more]
AT4G11360.1	1.3e-13	45.95	RING-H2 finger A1B	[more]
AT3G19950.1	2.9e-13	43.94	RING/U-box superfamily protein	[more]

BLAST of CmoCh07G005150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193577\|gb\|KGN48781.1\|	3.6e-82	93.79	hypothetical protein Csa_6G501220 [Cucumis sativus]	[more]
gi\|659080170\|ref\|XP_008440648.1\|	7.0e-78	94.12	PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis melo]	[more]
gi\|645303061\|ref\|XP_008245902.1\|	1.2e-58	68.10	PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Prunus mume]	[more]
gi\|590707663\|ref\|XP_007048067.1\|	2.1e-58	68.52	RING-H2 zinc finger protein RHA2a [Theobroma cacao]	[more]
gi\|595830307\|ref\|XP_007206044.1\|	2.8e-58	67.48	hypothetical protein PRUPE_ppa012579mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G005150.1	CmoCh07G005150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 73..117 score: 1.3
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 75..116 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 75..117 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 72..120 score: 5.1
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 59..142 score: 9.5
None	No IPR available	PANTHER	PTHR14155:SF175	E3 UBIQUITIN-PROTEIN LIGASE RHA2B-RELATED	coord: 59..142 score: 9.5
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 74..123 score: 8.08

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G005150	Cucsa.104680	Cucumber (Gy14) v1	cgycmoB0233
CmoCh07G005150	CmaCh03G007910	Cucurbita maxima (Rimu)	cmacmoB667
CmoCh07G005150	CmaCh07G005200	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G005150	Cla014172	Watermelon (97103) v1	cmowmB816
CmoCh07G005150	Csa6G501220	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G005150	MELO3C007785	Melon (DHL92) v3.5.1	cmomeB793
CmoCh07G005150	ClCG01G019070	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G005150	CSPI06G30530	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G005150	Lsi01G007320	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G005150	Cp4.1LG10g01110	Cucurbita pepo (Zucchini)	cmocpeB806
CmoCh07G005150	Cp4.1LG19g09770	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G005150	MELO3C007785.2	Melon (DHL92) v3.6.1	cmomedB896
CmoCh07G005150	CsaV3_6G045750	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G005150	Cla97C01G018530	Watermelon (97103) v2	cmowmbB849
CmoCh07G005150	Bhi03G000946	Wax gourd	cmowgoB1065
CmoCh07G005150	CsGy6G030020	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G005150	Carg16020	Silver-seed gourd	carcmoB1029
CmoCh07G005150	Carg00676	Silver-seed gourd	carcmoB0554

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh07G005150	CmoCh03G008250	Cucurbita moschata (Rifu)	cmocmoB455

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G005150	Cucurbita pepo (Zucchini)	cmocpeB813