Cp4.1LG09g00820 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g00820
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Methyl-CpG-binding domain-containing 13-like protein
Location	Cp4.1LG09 : 544636 .. 548309 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAGTTTCTTTCACTTTTGAAACCAAAGAAAGGGTTCCACTTTCCACTTTGCAGATATACCCATTACCCAGAACAGCCCGCTCTTTTTTCAAATCTAGAACTTATTCCTCCGCTCTTAAAGCTTATTAAAAGCTTCGATATTTCCCCTTTACTCTTCCGTTACAGCAGACGTTATTGGAACCTCTAGCGGTTTCAATCCTCTGCTTTACTCCCAGATACGTTGCCATAGTCCTCCACTTCAATCGGCGGTACATTTGAATCGAGTTACGTTTTGAACTTACAGATGGGTGTAAAGAACAATCGTAAGATCCAGAAAAGAGGGTCGTAGTCAAATGTGAAAGGGGAGAGTTGTAGAGGATAATGAATGGGGTCCGACACGTTTATATGCCTCGCAGGGTGCTTCTCAGAACACGTGGTTAGAAAGAATATTGTGTCGGAATCCTTCATTTTTATAGCCTCCTGAAGGGATTTGACACCAAAATCAGACTCTTGGCGAGCCCAAAAGAGAGAAAAACATAGAGGGGAAAGAGGGTTATTGAGATTGGCCGGTGGGTTTCGCCGGAAAGTCTGAATGATGAACCAGAAGTCGGAGGAATGGCTACCCCCTGGCTGGACGGTGAAGGTCAAAGTGAGGAAGAGTGGCAAAAAGGATAAGGTACTGGTTTTCATTTCCTTTTTGCTTGGATTTTTACTTGCATTTTATGAATCAATAGATCTTTGGCTCTTGATCTACTTTCTTTTTCATGCTGCACTTGCATAGATTCTTGTGCTGTTTCTGAGCTAACAACATATCGTTGTTCTTCCTGTTCTTCCTGTTCTTGACTATGAATTCTACATGAGATTTCATTATGATTTGCAATGTTAATATGAAAAGATCTGATTCTAATGTTGCAGTATTATTATGAACCCTCAAGTCAAATGAGATTCAATTCTAGAGCAGAGGTGTTTAGATATCTCAAAACTGCTGCAATCTGTTATCCTGAATCTGAAGAGAGCAGAACCTTCAAGCAATCACAGAACAATGTCTGTCAAAAGAGTCGACCCTCTACTCTATTTCTTTTGTTTTCAATTTTATTGTTATGAACTTCATTGATTTTTCTTCAAAAACTTGTATTATTCAAGCAATCTAGGTGGAAGTTAAGAAGACTTTAGCAAAAGGGTTACCTCCTGGATGGATCAGAGAAATCAGAGAAACCAAGACTGCTAATAGGATAAGAAGAGATTCAGTAATTCATCATCTATTTCCTTTATGTCGTTTTCATTTGTCGTGTTGTTTCGGCTTCGGATATGCTCTCGAACCGTGAACTTAGTCTAATCCGCATATTTAGTGACCATAAGATTGTAAAATGCTGAAGAACAAGCAAGTTTACAGATGAACTTTTGTTTGCAGTTTTACATTGATCCTGTAAATGGAAATGTATTTCGCTCGATAAGGGAAGTACATCGGTATCTAACAAGTGGAACAGTGAGCCGATTAGCGTATAAATCAAGGGATCAGAGAGGCATCGACGTTGAGTTTCAACATGATGATATCTCTGTGAGTTCTCTAATGATGCTCCAAGTTCGAGTTTCAACAAACTTTGGTTTTATCATCTTTGCCCTTTGATTAAACTTTTGTCTTTCCCTCTCGTTCGTAGTCGCCCGCTGTCCCCAAGAAAGAGATGCAAGCTATTGGCAAAGCAAGGAGACAGATAATATGGAACGAGAACTTGTTGGAACCCCGTGAAATAACGAACGATGAAGCTATTTTTCCGAATGCTACGAGTGTCGGAGAAAGCATGCCTCATTCTGAACCTGATTCGAGTCATGGTATAGTTTTGAACATAGCTACTTTAGATAGCAAATTCTTTCATTCCTTATGGATTTGACCCCTTCTGCCAGTTGAAGGTTAAGGTGAATTCAGTGACTGCTGCAGGAGAAATAGGCATTGACGTGCATTGTTCAACTCTACCAGAGCAATCAGATGGAAAGAATGATTTTTTTGAACTTGTGACGACTCCTAGTGATGGACCAACAAAGAATGAGAGTAAAAAGAGACAAAGGAAACCTAAAGACATGAACTTGACTCGCCGTGCTTCAAAACGACTTGCAGGGCTCCAAGCTGAGCCAGTGCTTGAAGTGAAAACAGGTCGCCGAGCACGTCCAGGTGCATGTGAAGAGTCTGATAAGCAAGCAGTCAGTAGTACAACTAAGTCAGTGTCTCAATGTCTTGAGAATCCTGATGTCAAGCATGGGACAAAGGGCATCATTGATCCTTCTAAAAGTATTAACACAAACCCAGATTCAAGTAGAAAAGATGATGTAAAACAAGACCCTATTCTTAAATTGCCAGTGGAGGACTTATTGGCTGATCCTTGCATTGCATTTGCAGTCAAAACTCTAACTGGAGGAGTTTTTGACGCATCCATAAGCTCAGAACTTTCACTGATGCCAAACGATATTGATCGTCCTTCAAATGAGAGTAGAAGCCTAGGCCCTAATGAGAAGTTGCCATCTTCGGAACTTCCTGTTAATCGAATCGGGGTAGTAGAGAAGCTAGAATCAACTTTGGAGTTGCCAGTAGGGGAAATATTGGCAGACCCTTGCATAGAATTTGCTATTAAAACTCTAACAGGGGAAATCCCTCTTGATGACAGTCCAGATATTGAGGATTATTTTCACCAACTTAGCACCTCGAAAACGCAAGGATCTAGTTCAAATGCCTTGAATAGTTTCGGTTCGGATCACTTCTACAAGATGAATGTTCAAAGCCAGAAGCGGCAGGTTATTCAAGCTCTGGAGGCATCTCCAAATATTAACTTCCAAAGCTGTGGAACTGGTTTACACCAACAAAAATGTAACAACTTTATAAGAATAAAGGATGACAAAGCTTAGATCATTTGTATGAAACATGATAGGCCAACATTGCCTATGAAAACATTTTCAGGATCAAACGCATGTAATTCTGTACTTGTTTGGTTGGGAAATCTAATGCTACCAATTAGCCCTTGAATCAAGATTTTCATTACATGTTTGTAGTAAAGCTAGATAACAGGTGACAGGAAGCCAGATTGTGTGGGTGCCCTCAGGCCGGAGGATGCATGAATTAGGGGCCTCTAACGCCTGTCAATGAGAGAAACATTCCCAATAAGTACCAAAGAATTATCTCAAGTGGCTAATACAGATGTTTGAACTCGATTTTCCAAGTTCTATGAAGTTCATAAGGAAGCTCAGCTAAAGAAATCAGAAACATAAATCAACTAAATTTGTTTCATATTTGGATATAAGCAGCAGAATCAGAAGACGCCGCACCTGCTCGAGCTCTCAATGTTTCGGTTCTCTTACTTCTTTCCATTATATCGACTAACCATTCAACACTGTCCTTTATCCCCATCCTGGAATCAAAACAATGAAGAATTTCAGCTTTCTAGAATGTTTTCTGCTGGTGAAGGATAATTTAATGGATAAAAAGCAGGCATAAAGCATATATTAGATGTCTACCGATGTCGGATCTCATCCCGTAATCCCATTACGAAAGAACTTTAGTGTTCTTGAGATTATGTAAATAGGATATATATACGTACCCATCATAGCCAGAAACAGCTTCAAACATGTAAACTCTTTCATCCAATTTTTTAAGATCCAGATAACGAGAAAGTTCTTCAGCTGATACTGCTTCAGAAAGATCCTGCAT

mRNA sequence

TGAAGTTTCTTTCACTTTTGAAACCAAAGAAAGGGTTCCACTTTCCACTTTGCAGATATACCCATTACCCAGAACAGCCCGCTCTTTTTTCAAATCTAGAACTTATTCCTCCGCTCTTAAAGCTTATTAAAAGCTTCGATATTTCCCCTTTACTCTTCCGTTACAGCAGACGTTATTGGAACCTCTAGCGGTTTCAATCCTCTGCTTTACTCCCAGATACGTTGCCATAGTCCTCCACTTCAATCGGCGGTACATTTGAATCGAGTTACGTTTTGAACTTACAGATGGGTGTAAAGAACAATCGTAAGATCCAGAAAAGAGGGTCGTAGTCAAATGTGAAAGGGGAGAGTTGTAGAGGATAATGAATGGGGTCCGACACGTTTATATGCCTCGCAGGGTGCTTCTCAGAACACGTGGTTAGAAAGAATATTGTGTCGGAATCCTTCATTTTTATAGCCTCCTGAAGGGATTTGACACCAAAATCAGACTCTTGGCGAGCCCAAAAGAGAGAAAAACATAGAGGGGAAAGAGGGTTATTGAGATTGGCCGGTGGGTTTCGCCGGAAAGTCTGAATGATGAACCAGAAGTCGGAGGAATGGCTACCCCCTGGCTGGACGGTGAAGGTCAAAGTGAGGAAGAGTGGCAAAAAGGATAAGTATTATTATGAACCCTCAAGTCAAATGAGATTCAATTCTAGAGCAGAGGTGTTTAGATATCTCAAAACTGCTGCAATCTGTTATCCTGAATCTGAAGAGAGCAGAACCTTCAAGCAATCACAGAACAATGTGGAAGTTAAGAAGACTTTAGCAAAAGGGTTACCTCCTGGATGGATCAGAGAAATCAGAGAAACCAAGACTGCTAATAGGATAAGAAGAGATTCATTTTACATTGATCCTGTAAATGGAAATGTATTTCGCTCGATAAGGGAAGTACATCGGTATCTAACAAGTGGAACAGTGAGCCGATTAGCGTATAAATCAAGGGATCAGAGAGGCATCGACGTTGAGTTTCAACATGATGATATCTCTTCGCCCGCTGTCCCCAAGAAAGAGATGCAAGCTATTGGCAAAGCAAGGAGACAGATAATATGGAACGAGAACTTGTTGGAACCCCGTGAAATAACGAACGATGAAGCTATTTTTCCGAATGCTACGAGTGTCGGAGAAAGCATGCCTCATTCTGAACCTGATTCGAGTCATGGAGAAATAGGCATTGACGTGCATTGTTCAACTCTACCAGAGCAATCAGATGGAAAGAATGATTTTTTTGAACTTGTGACGACTCCTAGTGATGGACCAACAAAGAATGAGAGTAAAAAGAGACAAAGGAAACCTAAAGACATGAACTTGACTCGCCGTGCTTCAAAACGACTTGCAGGGCTCCAAGCTGAGCCAGTGCTTGAAGTGAAAACAGGTCGCCGAGCACGTCCAGGTGCATGTGAAGAGTCTGATAAGCAAGCAGTCAGTAGTACAACTAAGTCAGTGTCTCAATGTCTTGAGAATCCTGATGTCAAGCATGGGACAAAGGGCATCATTGATCCTTCTAAAAGTATTAACACAAACCCAGATTCAAGTAGAAAAGATGATGTAAAACAAGACCCTATTCTTAAATTGCCAGTGGAGGACTTATTGGCTGATCCTTGCATTGCATTTGCAGTCAAAACTCTAACTGGAGGAGTTTTTGACGCATCCATAAGCTCAGAACTTTCACTGATGCCAAACGATATTGATCGTCCTTCAAATGAGAGTAGAAGCCTAGGCCCTAATGAGAAGTTGCCATCTTCGGAACTTCCTGTTAATCGAATCGGGGTAGTAGAGAAGCTAGAATCAACTTTGGAGTTGCCAGTAGGGGAAATATTGGCAGACCCTTGCATAGAATTTGCTATTAAAACTCTAACAGGGGAAATCCCTCTTGATGACAGTCCAGATATTGAGGATTATTTTCACCAACTTAGCACCTCGAAAACGCAAGGATCTAGTTCAAATGCCTTGAATAGTTTCGGTTCGGATCACTTCTACAAGATGAATGTTCAAAGCCAGAAGCGGCAGGTTATTCAAGCTCTGGAGGCATCTCCAAATATTAACTTCCAAAGCTGTGGAACTGGTTTACACCAACAAAAATGTAACAACTTTATAAGAATAAAGGATGACAAAGCTTAGATCATTTGTATGAAACATGATAGGCCAACATTGCCTATGAAAACATTTTCAGGATCAAACGCATGTAATTCTGTACTTGTTTGGTTGGGAAATCTAATGCTACCAATTAGCCCTTGAATCAAGATTTTCATTACATGTTTGTAGTAAAGCTAGATAACAGGTGACAGGAAGCCAGATTGTGTGGGTGCCCTCAGGCCGGAGGATGCATGAATTAGGGGCCTCTAACGCCTGTCAATGAGAGAAACATTCCCAATAAGTACCAAAGAATTATCTCAAGTGGCTAATACAGATGTTTGAACTCGATTTTCCAAGTTCTATGAAGTTCATAAGGAAGCTCAGCTAAAGAAATCAGAAACATAAATCAACTAAATTTGTTTCATATTTGGATATAAGCAGCAGAATCAGAAGACGCCGCACCTGCTCGAGCTCTCAATGTTTCGGTTCTCTTACTTCTTTCCATTATATCGACTAACCATTCAACACTGTCCTTTATCCCCATCCTGGAATCAAAACAATGAAGAATTTCAGCTTTCTAGAATGTTTTCTGCTGGTGAAGGATAATTTAATGGATAAAAAGCAGGCATAAAGCATATATTAGATGTCTACCGATGTCGGATCTCATCCCGTAATCCCATTACGAAAGAACTTTAGTGTTCTTGAGATTATGTAAATAGGATATATATACGTACCCATCATAGCCAGAAACAGCTTCAAACATGTAAACTCTTTCATCCAATTTTTTAAGATCCAGATAACGAGAAAGTTCTTCAGCTGATACTGCTTCAGAAAGATCCTGCAT

Coding sequence (CDS)

ATGATGAACCAGAAGTCGGAGGAATGGCTACCCCCTGGCTGGACGGTGAAGGTCAAAGTGAGGAAGAGTGGCAAAAAGGATAAGTATTATTATGAACCCTCAAGTCAAATGAGATTCAATTCTAGAGCAGAGGTGTTTAGATATCTCAAAACTGCTGCAATCTGTTATCCTGAATCTGAAGAGAGCAGAACCTTCAAGCAATCACAGAACAATGTGGAAGTTAAGAAGACTTTAGCAAAAGGGTTACCTCCTGGATGGATCAGAGAAATCAGAGAAACCAAGACTGCTAATAGGATAAGAAGAGATTCATTTTACATTGATCCTGTAAATGGAAATGTATTTCGCTCGATAAGGGAAGTACATCGGTATCTAACAAGTGGAACAGTGAGCCGATTAGCGTATAAATCAAGGGATCAGAGAGGCATCGACGTTGAGTTTCAACATGATGATATCTCTTCGCCCGCTGTCCCCAAGAAAGAGATGCAAGCTATTGGCAAAGCAAGGAGACAGATAATATGGAACGAGAACTTGTTGGAACCCCGTGAAATAACGAACGATGAAGCTATTTTTCCGAATGCTACGAGTGTCGGAGAAAGCATGCCTCATTCTGAACCTGATTCGAGTCATGGAGAAATAGGCATTGACGTGCATTGTTCAACTCTACCAGAGCAATCAGATGGAAAGAATGATTTTTTTGAACTTGTGACGACTCCTAGTGATGGACCAACAAAGAATGAGAGTAAAAAGAGACAAAGGAAACCTAAAGACATGAACTTGACTCGCCGTGCTTCAAAACGACTTGCAGGGCTCCAAGCTGAGCCAGTGCTTGAAGTGAAAACAGGTCGCCGAGCACGTCCAGGTGCATGTGAAGAGTCTGATAAGCAAGCAGTCAGTAGTACAACTAAGTCAGTGTCTCAATGTCTTGAGAATCCTGATGTCAAGCATGGGACAAAGGGCATCATTGATCCTTCTAAAAGTATTAACACAAACCCAGATTCAAGTAGAAAAGATGATGTAAAACAAGACCCTATTCTTAAATTGCCAGTGGAGGACTTATTGGCTGATCCTTGCATTGCATTTGCAGTCAAAACTCTAACTGGAGGAGTTTTTGACGCATCCATAAGCTCAGAACTTTCACTGATGCCAAACGATATTGATCGTCCTTCAAATGAGAGTAGAAGCCTAGGCCCTAATGAGAAGTTGCCATCTTCGGAACTTCCTGTTAATCGAATCGGGGTAGTAGAGAAGCTAGAATCAACTTTGGAGTTGCCAGTAGGGGAAATATTGGCAGACCCTTGCATAGAATTTGCTATTAAAACTCTAACAGGGGAAATCCCTCTTGATGACAGTCCAGATATTGAGGATTATTTTCACCAACTTAGCACCTCGAAAACGCAAGGATCTAGTTCAAATGCCTTGAATAGTTTCGGTTCGGATCACTTCTACAAGATGAATGTTCAAAGCCAGAAGCGGCAGGTTATTCAAGCTCTGGAGGCATCTCCAAATATTAACTTCCAAAGCTGTGGAACTGGTTTACACCAACAAAAATGTAACAACTTTATAAGAATAAAGGATGACAAAGCTTAG

Protein sequence

MMNQKSEEWLPPGWTVKVKVRKSGKKDKYYYEPSSQMRFNSRAEVFRYLKTAAICYPESEESRTFKQSQNNVEVKKTLAKGLPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREVHRYLTSGTVSRLAYKSRDQRGIDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNENLLEPREITNDEAIFPNATSVGESMPHSEPDSSHGEIGIDVHCSTLPEQSDGKNDFFELVTTPSDGPTKNESKKRQRKPKDMNLTRRASKRLAGLQAEPVLEVKTGRRARPGACEESDKQAVSSTTKSVSQCLENPDVKHGTKGIIDPSKSINTNPDSSRKDDVKQDPILKLPVEDLLADPCIAFAVKTLTGGVFDASISSELSLMPNDIDRPSNESRSLGPNEKLPSSELPVNRIGVVEKLESTLELPVGEILADPCIEFAIKTLTGEIPLDDSPDIEDYFHQLSTSKTQGSSSNALNSFGSDHFYKMNVQSQKRQVIQALEASPNINFQSCGTGLHQQKCNNFIRIKDDKA

Homology

[Close]

BLAST of Cp4.1LG09g00820 vs. Swiss-Prot
Match: MBD7_ARATH (Methyl-CpG-binding domain-containing protein 7 OS=Arabidopsis thaliana GN=MBD7 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.6e-08
Identity = 43/120 (35.83%), Postives = 62/120 (51.67%), Query Frame = 1


Query: 10  LPPGWTVK-VKVRKSGKKDKYYYEPSSQMRFNSRAEVFRYLKTAAICYPESEESRTFKQS 69
           LP GW+V+ V  + S   DKYY E  +  RF S   V RYL+         E   + +Q 
Sbjct: 116 LPRGWSVEEVPRKNSHYIDKYYVERKTGKRFRSLVSVERYLR---------ESRNSIEQQ 175

Query: 70  QNNVEVKKTLAKG--LPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREVHRYLTS 127
              ++ ++  +K   LP GWI E +  ++++ I  D  YI+P  GN FRS+  V RYL S
Sbjct: 176 LRVLQNRRGHSKDFRLPDGWIVEEKPRRSSSHI--DRSYIEPGTGNKFRSMAAVERYLIS 224

[Close]

BLAST of Cp4.1LG09g00820 vs. Swiss-Prot
Match: MBD6_ARATH (Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana GN=MBD6 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.3e-07
Identity = 40/130 (30.77%), Postives = 53/130 (40.77%), Query Frame = 1


Query: 7   EEWLPPGWTVKVKVRKSGKK----DKYYYEPSSQMRFNSRAEVFRYLKTAAICYPESEES 66
           + WLPPGW V+ K+R SG      DKYYYEP++  +F SR EV  YL+         +  
Sbjct: 78  DNWLPPGWRVEDKIRTSGATAGSVDKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAE 137

Query: 67  RTF-------KQSQNNVEVKKTLAKGLPP-----------------------GWIREIRE 103
            T+        Q  N V    T+    PP                       GWI  I +
Sbjct: 138 NTYFNPDHFEGQGSNRVTRTATVPPPPPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGD 197

[Close]

BLAST of Cp4.1LG09g00820 vs. Swiss-Prot
Match: MBD13_ARATH (Methyl-CpG-binding domain-containing protein 13 OS=Arabidopsis thaliana GN=MBD13 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.3e-07
Identity = 40/137 (29.20%), Postives = 72/137 (52.55%), Query Frame = 1


Query: 69  QNNVEVKKTLAKGLPPGWIREIRETKTANR-IRRDSFYIDPVNGNVFRSIREVHRYLTSG 128
           ++ V V+K+ A+GLP GWI+++  T  + R  RRD F+IDP +  +F+S ++  RY+ +G
Sbjct: 26  KDKVIVEKSAAQGLPEGWIKKLEITNRSGRKTRRDPFFIDPKSEYIFQSFKDASRYVETG 85

Query: 129 TVSRLAYKSRDQRGIDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNENLLEPREITNDE 188
            +   A K ++    D+E   DD S        ++ + K        +++LE +E T D+
Sbjct: 86  NIGHYARKLKES---DIE---DDDSGNGKTVLRLEYVDKRSA-----DDVLE-KEKTIDD 145

Query: 189 AIFPNATSVGESMPHSE 205
                  ++  S  HS+
Sbjct: 146 VRRSKRRNLSSSDEHSK 150

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BLAST of Cp4.1LG09g00820 vs. TrEMBL
Match: A0A0A0L6H4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G181990 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 1.4e-110
Identity = 240/424 (56.60%), Postives = 282/424 (66.51%), Query Frame = 1


Query: 37  MRFNSRAEVFRYLKTAAICYPESEESRTFKQSQNNVEVKKTLAKGLPPGWIREIRETKTA 96
           MRFNSRAEVFRYLKTAAIC+PESEESRT K+  NNVEVKKT+AK LP GWI EIRETKTA
Sbjct: 1   MRFNSRAEVFRYLKTAAICHPESEESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTA 60

Query: 97  NRIRRDSFYIDPVNGNVFRSIREVHRYLTSGTVSRLAYKSRDQRGIDVEFQHDDISSPAV 156
           NRIRRDS YIDPVNGN  RSIR+VHRYLTSG VSRL +KSR+QR  ++EFQHD+ISSP V
Sbjct: 61  NRIRRDSSYIDPVNGNALRSIRDVHRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVV 120

Query: 157 PKKEMQAIGKARRQIIWNENLLEPREITNDEAIFPNATSVGESMPHSEPDSSHGEIGIDV 216
            KKE+  IGKARRQIIW+EN  EP E+ + EA+FPNA SVGE++    PD S G I    
Sbjct: 121 SKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFPNA-SVGETVLFPIPDPSLGGISAKP 180

Query: 217 HCSTLPE-----QSDGKNDFFELVTTPSD----------GPTKNESKKRQRKPKDMNLTR 276
           HCST  +     QSDGKND  E+V TP +          G TK ES+KRQRK  D+NL R
Sbjct: 181 HCSTPTDAKGLKQSDGKNDISEIVLTPKEFIQHKCPIENGATKGESRKRQRKTNDINLPR 240

Query: 277 RASKRLAGLQAEPVLEVKTGRRARPGACEESDKQAVSSTTKSVSQCLENPDVKHGTKGII 336
           RASKRLAGLQAEPVL+VKTGRRAR  ACEESDKQ  S+T     QC ENPDVKH T    
Sbjct: 241 RASKRLAGLQAEPVLQVKTGRRARSVACEESDKQVASTTKLVAFQCPENPDVKHKTNSTA 300

Query: 337 DPSKSINTNPDSSRKDDVKQDPILKLPVEDLLADPCIAFAVKTLTGGVFDASISSELSLM 396
           DPSK INT+PDS  K  +  D               ++  +K  +   ++     E SL 
Sbjct: 301 DPSK-INTSPDSGGKAHICVD---------------LSIVMKMKSADAYEQQPKPESSLP 360

Query: 397 PNDIDRPSNESRSLGPNEKLPSSELPVNRIGVVEKLESTLELPVGEILADPCIEFAIKTL 446
           P D+         L  +  +   E   N    V+K    L+LP+ ++L DPCI FA+KTL
Sbjct: 361 PEDV---------LEKHVGMVEIEDKAN----VKKQGPLLKLPMEDLLTDPCIAFAVKTL 394

[Close]

BLAST of Cp4.1LG09g00820 vs. TrEMBL
Match: A0A061G045_THECC (Methyl-CPG-binding domain protein 13, putative isoform 2 OS=Theobroma cacao GN=TCM_015148 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.1e-59
Identity = 204/603 (33.83%), Postives = 299/603 (49.59%), Query Frame = 1


Query: 1   MMNQKSEEWLPPGWTVKVKVRKSGKKDKYYYEPSSQMRFNSRAEVFRYLKTAAICYPESE 60
           M +Q +++WLPPGW V+V+ R++GKKDK YY P  ++RF SRAEV RYL     C  E +
Sbjct: 1   MEDQTTDDWLPPGWKVEVRQRRNGKKDKCYYAPCGELRFISRAEVSRYLDKCG-CKTEEK 60

Query: 61  ESRTFKQSQNNVEVKKTLAKGLPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREV 120
           E+ + KQS  NV V+K  A+GLPPGWI+EIR TK A+R+R+D FY DPV+G VFRS+++ 
Sbjct: 61  ENGSGKQSSKNVTVEKAAAEGLPPGWIKEIRITKRAHRVRKDPFYTDPVSGYVFRSMKDA 120

Query: 121 HRYLTSGTVSRLAYKSRDQRGIDVEFQHDDISSPA-VPKKEMQAIG---KARRQIIWNEN 180
            RY+ +G + +LA+K +D+   D + + D+I  PA V ++++   G   +  RQ    E 
Sbjct: 121 LRYVETGELGKLAFKPKDKGSNDEDLEEDNICEPAHVERQKIDVNGITDETERQSA--EQ 180

Query: 181 LLEPREITNDEAIFPNATSVGESMPHSEPDSSHGEIGIDVHCSTL-------PEQSDGK- 240
           +     IT +E +  +A S GE    S+  ++  + G+    S+L        EQ  GK 
Sbjct: 181 VSNLSGITKEEEMLASA-STGEQTSLSKHATNQHKAGVGAELSSLKLSEAKGSEQIGGKD 240

Query: 241 ---------NDFFELVTTPS--DGPTKNESKKRQ------RKPKDMNLTRRASKRLAGLQ 300
                    N    L+   S  +G  K+E++K Q      +  K  N+ RRASKRLAG+ 
Sbjct: 241 SEEGVHASGNVVGVLLDKQSSENGMIKDETEKTQQGRGKTKLKKAFNIPRRASKRLAGVA 300

Query: 301 AEPVLEVKTGRRAR------------------PGAC-EESDKQAVSSTTKSVSQC-LENP 360
            +P  E+KT R  R                  PG C   + KQ     +   + C L++P
Sbjct: 301 LDPTPELKTARARRSSFKQLSEVIPDAAESSSPGRCIHGASKQPDQPESALETSCDLDSP 360

Query: 361 DVKHGTKGIIDPSK---------------SINTNPDSSR------------------KDD 420
             K   + I+ P+                ++ T  D+                    + D
Sbjct: 361 KSK---ELILAPNNMLSSGEMLTMNGHVGNLETEADADNGVLPLGNAAIPGVHSGKVESD 420

Query: 421 VKQDPI----LKLPVEDLLADPCIAFAVKTLTGGVFDASISSEL--SLMPNDIDRP---- 480
           VK   +    + +P+ DL  DPCIAFA++TLTG   D    SEL  S  P  +  P    
Sbjct: 421 VKASEVPGSLVDMPLADLWTDPCIAFAIQTLTGIPCDNPKISELNSSKGPGILATPEVHA 480

Query: 481 --------SNESRSLGPNEKLPSSELPVNRIGVVE-------KLESTLELPVGEILADPC 496
                   S E +  G +  L    +P    G VE       K  S+L+ P+ +I ADPC
Sbjct: 481 ERKVNGNGSVERQGCGMDLPLADPAIPKEHAGKVEMGHKTDDKPGSSLDTPLADIWADPC 540

[Close]

BLAST of Cp4.1LG09g00820 vs. TrEMBL
Match: A0A061G828_THECC (Methyl-CPG-binding domain protein 13, putative isoform 1 OS=Theobroma cacao GN=TCM_015148 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.8e-58
Identity = 204/607 (33.61%), Postives = 299/607 (49.26%), Query Frame = 1


Query: 1   MMNQKSEEWLPPGWTVKVKVRKSGKKDKY----YYEPSSQMRFNSRAEVFRYLKTAAICY 60
           M +Q +++WLPPGW V+V+ R++GKKDK     YY P  ++RF SRAEV RYL     C 
Sbjct: 1   MEDQTTDDWLPPGWKVEVRQRRNGKKDKLRVMCYYAPCGELRFISRAEVSRYLDKCG-CK 60

Query: 61  PESEESRTFKQSQNNVEVKKTLAKGLPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRS 120
            E +E+ + KQS  NV V+K  A+GLPPGWI+EIR TK A+R+R+D FY DPV+G VFRS
Sbjct: 61  TEEKENGSGKQSSKNVTVEKAAAEGLPPGWIKEIRITKRAHRVRKDPFYTDPVSGYVFRS 120

Query: 121 IREVHRYLTSGTVSRLAYKSRDQRGIDVEFQHDDISSPA-VPKKEMQAIG---KARRQII 180
           +++  RY+ +G + +LA+K +D+   D + + D+I  PA V ++++   G   +  RQ  
Sbjct: 121 MKDALRYVETGELGKLAFKPKDKGSNDEDLEEDNICEPAHVERQKIDVNGITDETERQSA 180

Query: 181 WNENLLEPREITNDEAIFPNATSVGESMPHSEPDSSHGEIGIDVHCSTL-------PEQS 240
             E +     IT +E +  +A S GE    S+  ++  + G+    S+L        EQ 
Sbjct: 181 --EQVSNLSGITKEEEMLASA-STGEQTSLSKHATNQHKAGVGAELSSLKLSEAKGSEQI 240

Query: 241 DGK----------NDFFELVTTPS--DGPTKNESKKRQ------RKPKDMNLTRRASKRL 300
            GK          N    L+   S  +G  K+E++K Q      +  K  N+ RRASKRL
Sbjct: 241 GGKDSEEGVHASGNVVGVLLDKQSSENGMIKDETEKTQQGRGKTKLKKAFNIPRRASKRL 300

Query: 301 AGLQAEPVLEVKTGRRAR------------------PGAC-EESDKQAVSSTTKSVSQC- 360
           AG+  +P  E+KT R  R                  PG C   + KQ     +   + C 
Sbjct: 301 AGVALDPTPELKTARARRSSFKQLSEVIPDAAESSSPGRCIHGASKQPDQPESALETSCD 360

Query: 361 LENPDVKHGTKGIIDPSK---------------SINTNPDSSR----------------- 420
           L++P  K   + I+ P+                ++ T  D+                   
Sbjct: 361 LDSPKSK---ELILAPNNMLSSGEMLTMNGHVGNLETEADADNGVLPLGNAAIPGVHSGK 420

Query: 421 -KDDVKQDPI----LKLPVEDLLADPCIAFAVKTLTGGVFDASISSEL--SLMPNDIDRP 480
            + DVK   +    + +P+ DL  DPCIAFA++TLTG   D    SEL  S  P  +  P
Sbjct: 421 VESDVKASEVPGSLVDMPLADLWTDPCIAFAIQTLTGIPCDNPKISELNSSKGPGILATP 480

Query: 481 ------------SNESRSLGPNEKLPSSELPVNRIGVVE-------KLESTLELPVGEIL 496
                       S E +  G +  L    +P    G VE       K  S+L+ P+ +I 
Sbjct: 481 EVHAERKVNGNGSVERQGCGMDLPLADPAIPKEHAGKVEMGHKTDDKPGSSLDTPLADIW 540

[Close]

BLAST of Cp4.1LG09g00820 vs. TrEMBL
Match: A0A0L9VIJ9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g078700 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.9e-52
Identity = 173/570 (30.35%), Postives = 276/570 (48.42%), Query Frame = 1


Query: 1   MMNQKSEEWLPPGWTVKVKVRKSGKKDKYYYEPSSQMRFNSRAEVFRYLKTAAICYPESE 60
           M    S++ LPPGWTV+V+VRK+G++DKYY  PSS ++F S+ EVFR++  A+     + 
Sbjct: 1   MEKTDSDDRLPPGWTVEVRVRKNGRRDKYYILPSSGLKFKSKVEVFRHIDNASN-KDNAS 60

Query: 61  ESRTFKQSQNNVEVKKTLAKGLPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREV 120
              + ++   NV V+K +A+GLPPGW+++ R     +++RRD++YIDPV+G  F SI + 
Sbjct: 61  NKVSIQRISPNVVVEKAIAEGLPPGWVKKTRIATKGDKVRRDTYYIDPVSGYTFHSIEDA 120

Query: 121 HRYLTSGTVSRLAYKSRDQRGIDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNENLLEP 180
           + YL SG + R  +K +D+   D   + D   S  V  K   ++  A+   +        
Sbjct: 121 YHYLESGEMGRNTFKPKDEDNNDTNLKDDKSPSACVTMKPTLSVSMAQSSTL-------- 180

Query: 181 REITNDEAIFPNATSVGESMPHSEPDS--SHGEIGIDVHCSTLPEQSDGKNDFFELVTTP 240
            +++N + I P + S GE M  S+ +   +HG    D     L E ++ K          
Sbjct: 181 DKVSNYQQI-PRSASSGEHMHMSDSNCIFNHGCTNKDTQEKKLQENTETKQG-------- 240

Query: 241 SDGPTKNESKKRQRKPKDMNLTRRASKRLAGLQAEPVLEVKT---GRRARPGACEE-SDK 300
           ++       K R +  K +NL RR+SKRLAG++ +PV E+KT    RRAR  A ++ S++
Sbjct: 241 TEKVQAQHHKCRNKHKKQINLPRRSSKRLAGIKLDPVPELKTRNRARRARQAAVKQSSEE 300

Query: 301 QAVSSTTKSVS--------QCLENPDVKHGTKGIIDPSKSIN---TNPDSSRKDDVKQDP 360
           + ++   KS S        Q L   D +  T   ++ + ++       ++  K D K D 
Sbjct: 301 ETITYVDKSPSSLHDDLAKQQLSGKDKECFTFSPLENNATVEECMRVTENGDKVDTKLDY 360

Query: 361 ILKLPVEDLLADPCIAFAVKTLTGGVFDASISSELSLMPNDIDRPSNES----------- 420
            L  P+++LL DPCIAFA++TLTG  F+ S +S+ S    DI    N +           
Sbjct: 361 NLGFPLKELLTDPCIAFAIQTLTGLTFETSKNSQTSCELKDIQHSENSAVSGCEGQGKKC 420

Query: 421 ------------RSLGPNEKLPSSELPVNRIGVVEKLESTLELPVGEILADPCIEFAIKT 480
                        SL  +++       ++     E    + E  +     DPCIEFAIKT
Sbjct: 421 NDGLGDSVFSSPGSLATSQEHAGDAAKIDMKAKNENTSPSSEKTLDMSWMDPCIEFAIKT 480

Query: 481 LTGEIPLDDSPDIEDYFHQLSTSKTQGSSSNALNSFGSDHFYKMNVQSQKRQVIQ----- 518
           LT  IPLD   + ++      T KT  S+ +  N + +D++      SQK    Q     
Sbjct: 481 LTDSIPLDSDQNPKNC--NQHTEKTM-SNVSLNNPYQTDYYCSQYFGSQKPMFTQSFVDP 540

[Close]

BLAST of Cp4.1LG09g00820 vs. TrEMBL
Match: V7C2B4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G117900g PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.3e-50
Identity = 178/557 (31.96%), Postives = 261/557 (46.86%), Query Frame = 1


Query: 1   MMNQKSEEWLPPGWTVKVKVRKSGKKDKYYYEPSSQMRFNSRAEVFRYLKTAAICYPESE 60
           M    S++ LPPGWTV+VKVRK+GK+DKYY+ PSS ++FNS+ EV+RYL  A        
Sbjct: 1   MEKLNSDDQLPPGWTVEVKVRKNGKRDKYYFLPSSGLKFNSKVEVYRYLDNA-------N 60

Query: 61  ESRTFKQSQNNVEVKKTLAKGLPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREV 120
              + ++   NV V+K +A+GLPPGW+++ R     + +RRD++YIDPV+G  F SI +V
Sbjct: 61  NKVSIQKISPNVVVEKAIAEGLPPGWVKKTRIATKGDTVRRDTYYIDPVSGYAFHSIEDV 120

Query: 121 HRYLTSGTVSRLAYKSRDQRGIDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNENLLEP 180
             YL SG V R   K +D+   D + + D   S  V  K   +I   +   +        
Sbjct: 121 DHYLESGEVGRNTLKPKDEDISDTKLKDDKSPSACVTMKPTSSISMGQSSDL-------- 180

Query: 181 REITNDEAIFPNATSVGESMPHSEPDS----SHGEIGIDVHCSTL--PEQSDGKN---DF 240
            ++  +    P + S GE M    PDS    +HG +G ++  S L   E SD K     F
Sbjct: 181 -DMVANYQQIPRSASSGEYMHVPVPDSKFIFNHGVVGTELSSSVLSRDENSDQKQVKVGF 240

Query: 241 FELVTT-------------PSDGPTKNESKK--------RQRKPKDMNLTRRASKRLAGL 300
            E  +                   TK  ++K        + +  K++NL RR SKRLAG+
Sbjct: 241 AESASVSGCTIKHTQEKQLQESSETKQGTEKVQAQHHQCKNKHKKEINLPRRCSKRLAGI 300

Query: 301 QAEPVLEVKTGRRARPGACEESDKQAVSSTTKSVSQCLENPDVKHGTKGIIDPSKSINTN 360
           + +PV E+KT  R R  A ++S +  V  ++ S+   L    +    K     S   N  
Sbjct: 301 KLDPVPELKTRNRTRRVAVKKSAE--VDKSSDSLHDGLAKQKLSGNYKEGFTFSHVQNNA 360

Query: 361 P--------DSSRKDDVKQDPILKLPVEDLLADPCIAFAVKTLTGGVFDASISSELSLMP 420
           P        ++      K D  L  P+ +LL DPCIAFA++TLTG  F+ S +S+ S   
Sbjct: 361 PVEECMRVTETGDNVVAKLDYNLDFPLRELLTDPCIAFAIQTLTGLTFETSKNSQTSSEL 420

Query: 421 NDI-----------------------DRPSNESRSLGPNEKLPSSELPVNRIGVVEKLES 480
            DI                       D   +   SL  +++  S     +     E    
Sbjct: 421 KDIQHSETSATAGCEGKGKKSNDGLSDNVFSSPGSLATSQEHASDAAKSDMKTKNENASP 480

Query: 481 TLELPVGEILADPCIEFAIKTLTGEIPLDDSPDIEDYF-HQLSTSKTQGSS---SNAL-- 491
           + E  +     DPCIEFAIKTLT  IPLD   + ++    QLS+S  Q S    SN    
Sbjct: 481 SSEKTLDMSWMDPCIEFAIKTLTDSIPLDSDQNPKNCLQQQLSSSSNQHSEMTMSNVSLN 539

[Close]

BLAST of Cp4.1LG09g00820 vs. TAIR10
Match: AT5G59800.1 (AT5G59800.1 methyl-CPG-binding domain 7)

HSP 1 Score: 60.1 bits (144), Expect = 4.8e-09
Identity = 43/120 (35.83%), Postives = 62/120 (51.67%), Query Frame = 1


Query: 10  LPPGWTVK-VKVRKSGKKDKYYYEPSSQMRFNSRAEVFRYLKTAAICYPESEESRTFKQS 69
           LP GW+V+ V  + S   DKYY E  +  RF S   V RYL+         E   + +Q 
Sbjct: 116 LPRGWSVEEVPRKNSHYIDKYYVERKTGKRFRSLVSVERYLR---------ESRNSIEQQ 175

Query: 70  QNNVEVKKTLAKG--LPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREVHRYLTS 127
              ++ ++  +K   LP GWI E +  ++++ I  D  YI+P  GN FRS+  V RYL S
Sbjct: 176 LRVLQNRRGHSKDFRLPDGWIVEEKPRRSSSHI--DRSYIEPGTGNKFRSMAAVERYLIS 224

[Close]

BLAST of Cp4.1LG09g00820 vs. TAIR10
Match: AT5G59380.1 (AT5G59380.1 methyl-CPG-binding domain 6)

HSP 1 Score: 58.2 bits (139), Expect = 1.8e-08
Identity = 40/130 (30.77%), Postives = 53/130 (40.77%), Query Frame = 1


Query: 7   EEWLPPGWTVKVKVRKSGKK----DKYYYEPSSQMRFNSRAEVFRYLKTAAICYPESEES 66
           + WLPPGW V+ K+R SG      DKYYYEP++  +F SR EV  YL+         +  
Sbjct: 78  DNWLPPGWRVEDKIRTSGATAGSVDKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAE 137

Query: 67  RTF-------KQSQNNVEVKKTLAKGLPP-----------------------GWIREIRE 103
            T+        Q  N V    T+    PP                       GWI  I +
Sbjct: 138 NTYFNPDHFEGQGSNRVTRTATVPPPPPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGD 197

[Close]

BLAST of Cp4.1LG09g00820 vs. TAIR10
Match: AT5G52230.1 (AT5G52230.1 methyl-CPG-binding domain protein 13)

HSP 1 Score: 58.2 bits (139), Expect = 1.8e-08
Identity = 40/137 (29.20%), Postives = 72/137 (52.55%), Query Frame = 1


Query: 69  QNNVEVKKTLAKGLPPGWIREIRETKTANR-IRRDSFYIDPVNGNVFRSIREVHRYLTSG 128
           ++ V V+K+ A+GLP GWI+++  T  + R  RRD F+IDP +  +F+S ++  RY+ +G
Sbjct: 26  KDKVIVEKSAAQGLPEGWIKKLEITNRSGRKTRRDPFFIDPKSEYIFQSFKDASRYVETG 85

Query: 129 TVSRLAYKSRDQRGIDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNENLLEPREITNDE 188
            +   A K ++    D+E   DD S        ++ + K        +++LE +E T D+
Sbjct: 86  NIGHYARKLKES---DIE---DDDSGNGKTVLRLEYVDKRSA-----DDVLE-KEKTIDD 145

Query: 189 AIFPNATSVGESMPHSE 205
                  ++  S  HS+
Sbjct: 146 VRRSKRRNLSSSDEHSK 150

[Close]

BLAST of Cp4.1LG09g00820 vs. TAIR10
Match: AT3G46580.1 (AT3G46580.1 methyl-CPG-binding domain protein 5)

HSP 1 Score: 49.3 bits (116), Expect = 8.5e-06
Identity = 25/71 (35.21%), Postives = 40/71 (56.34%), Query Frame = 1


Query: 7  EEWLPPGWTVKVKVRKSGKK----DKYYYEPSSQMRFNSRAEVFRYLKTAAICYPESEES 66
          + WLPP W  +++VR SG K    DK+YYEP +  +F S+ EV  YL+      P+ +  
Sbjct: 32 DNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYLEHGT---PKKKSV 91

Query: 67 RTFKQSQNNVE 74
          +T +   ++ E
Sbjct: 92 KTAENGDSHSE 99

[Close]

BLAST of Cp4.1LG09g00820 vs. NCBI nr
Match: gi|778679537|ref|XP_011651143.1| (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis sativus])

HSP 1 Score: 473.0 bits (1216), Expect = 6.8e-130
Identity = 271/460 (58.91%), Postives = 316/460 (68.70%), Query Frame = 1


Query: 1   MMNQKSEEWLPPGWTVKVKVRKSGKKDKYYYEPSSQMRFNSRAEVFRYLKTAAICYPESE 60
           MMNQ S++ LPPGWTVKVKVRKSGKKDKYY+EPSSQMRFNSRAEVFRYLKTAAIC+PESE
Sbjct: 1   MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE 60

Query: 61  ESRTFKQSQNNVEVKKTLAKGLPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREV 120
           ESRT K+  NNVEVKKT+AK LP GWI EIRETKTANRIRRDS YIDPVNGN  RSIR+V
Sbjct: 61  ESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDPVNGNALRSIRDV 120

Query: 121 HRYLTSGTVSRLAYKSRDQRGIDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNENLLEP 180
           HRYLTSG VSRL +KSR+QR  ++EFQHD+ISSP V KKE+  IGKARRQIIW+EN  EP
Sbjct: 121 HRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEP 180

Query: 181 REITNDEAIFPNATSVGESMPHSEPDSSHGEIGIDVHCSTLPE-----QSDGKNDFFELV 240
            E+ + EA+FPNA SVGE++    PD S G I    HCST  +     QSDGKND  E+V
Sbjct: 181 SEMVDGEAMFPNA-SVGETVLFPIPDPSLGGISAKPHCSTPTDAKGLKQSDGKNDISEIV 240

Query: 241 TTPSD----------GPTKNESKKRQRKPKDMNLTRRASKRLAGLQAEPVLEVKTGRRAR 300
            TP +          G TK ES+KRQRK  D+NL RRASKRLAGLQAEPVL+VKTGRRAR
Sbjct: 241 LTPKEFIQHKCPIENGATKGESRKRQRKTNDINLPRRASKRLAGLQAEPVLQVKTGRRAR 300

Query: 301 PGACEESDKQAVSSTTKSVSQCLENPDVKHGTKGIIDPSKSINTNPDSSRKDDVKQDPIL 360
             ACEESDKQ  S+T     QC ENPDVKH T    DPSK INT+PDS  K  +  D   
Sbjct: 301 SVACEESDKQVASTTKLVAFQCPENPDVKHKTNSTADPSK-INTSPDSGGKAHICVD--- 360

Query: 361 KLPVEDLLADPCIAFAVKTLTGGVFDASISSELSLMPNDIDRPSNESRSLGPNEKLPSSE 420
                       ++  +K  +   ++     E SL P D+         L  +  +   E
Sbjct: 361 ------------LSIVMKMKSADAYEQQPKPESSLPPEDV---------LEKHVGMVEIE 420

Query: 421 LPVNRIGVVEKLESTLELPVGEILADPCIEFAIKTLTGEI 446
              N    V+K    L+LP+ ++L DPCI FA+KTLTG++
Sbjct: 421 DKAN----VKKQGPLLKLPMEDLLTDPCIAFAVKTLTGDV 430

[Close]

BLAST of Cp4.1LG09g00820 vs. NCBI nr
Match: gi|778679540|ref|XP_011651144.1| (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucumis sativus])

HSP 1 Score: 408.3 bits (1048), Expect = 2.0e-110
Identity = 240/424 (56.60%), Postives = 282/424 (66.51%), Query Frame = 1


Query: 37  MRFNSRAEVFRYLKTAAICYPESEESRTFKQSQNNVEVKKTLAKGLPPGWIREIRETKTA 96
           MRFNSRAEVFRYLKTAAIC+PESEESRT K+  NNVEVKKT+AK LP GWI EIRETKTA
Sbjct: 1   MRFNSRAEVFRYLKTAAICHPESEESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTA 60

Query: 97  NRIRRDSFYIDPVNGNVFRSIREVHRYLTSGTVSRLAYKSRDQRGIDVEFQHDDISSPAV 156
           NRIRRDS YIDPVNGN  RSIR+VHRYLTSG VSRL +KSR+QR  ++EFQHD+ISSP V
Sbjct: 61  NRIRRDSSYIDPVNGNALRSIRDVHRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVV 120

Query: 157 PKKEMQAIGKARRQIIWNENLLEPREITNDEAIFPNATSVGESMPHSEPDSSHGEIGIDV 216
            KKE+  IGKARRQIIW+EN  EP E+ + EA+FPNA SVGE++    PD S G I    
Sbjct: 121 SKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFPNA-SVGETVLFPIPDPSLGGISAKP 180

Query: 217 HCSTLPE-----QSDGKNDFFELVTTPSD----------GPTKNESKKRQRKPKDMNLTR 276
           HCST  +     QSDGKND  E+V TP +          G TK ES+KRQRK  D+NL R
Sbjct: 181 HCSTPTDAKGLKQSDGKNDISEIVLTPKEFIQHKCPIENGATKGESRKRQRKTNDINLPR 240

Query: 277 RASKRLAGLQAEPVLEVKTGRRARPGACEESDKQAVSSTTKSVSQCLENPDVKHGTKGII 336
           RASKRLAGLQAEPVL+VKTGRRAR  ACEESDKQ  S+T     QC ENPDVKH T    
Sbjct: 241 RASKRLAGLQAEPVLQVKTGRRARSVACEESDKQVASTTKLVAFQCPENPDVKHKTNSTA 300

Query: 337 DPSKSINTNPDSSRKDDVKQDPILKLPVEDLLADPCIAFAVKTLTGGVFDASISSELSLM 396
           DPSK INT+PDS  K  +  D               ++  +K  +   ++     E SL 
Sbjct: 301 DPSK-INTSPDSGGKAHICVD---------------LSIVMKMKSADAYEQQPKPESSLP 360

Query: 397 PNDIDRPSNESRSLGPNEKLPSSELPVNRIGVVEKLESTLELPVGEILADPCIEFAIKTL 446
           P D+         L  +  +   E   N    V+K    L+LP+ ++L DPCI FA+KTL
Sbjct: 361 PEDV---------LEKHVGMVEIEDKAN----VKKQGPLLKLPMEDLLTDPCIAFAVKTL 394

[Close]

BLAST of Cp4.1LG09g00820 vs. NCBI nr
Match: gi|778679543|ref|XP_011651145.1| (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X3 [Cucumis sativus])

HSP 1 Score: 350.5 bits (898), Expect = 5.1e-93
Identity = 210/392 (53.57%), Postives = 252/392 (64.29%), Query Frame = 1


Query: 69  QNNVEVKKTLAKGLPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREVHRYLTSGT 128
           ++ VEVKKT+AK LP GWI EIRETKTANRIRRDS YIDPVNGN  RSIR+VHRYLTSG 
Sbjct: 26  KDKVEVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDPVNGNALRSIRDVHRYLTSGK 85

Query: 129 VSRLAYKSRDQRGIDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNENLLEPREITNDEA 188
           VSRL +KSR+QR  ++EFQHD+ISSP V KKE+  IGKARRQIIW+EN  EP E+ + EA
Sbjct: 86  VSRLTHKSRNQRDNNIEFQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEPSEMVDGEA 145

Query: 189 IFPNATSVGESMPHSEPDSSHGEIGIDVHCSTLPE-----QSDGKNDFFELVTTPSD--- 248
           +FPNA SVGE++    PD S G I    HCST  +     QSDGKND  E+V TP +   
Sbjct: 146 MFPNA-SVGETVLFPIPDPSLGGISAKPHCSTPTDAKGLKQSDGKNDISEIVLTPKEFIQ 205

Query: 249 -------GPTKNESKKRQRKPKDMNLTRRASKRLAGLQAEPVLEVKTGRRARPGACEESD 308
                  G TK ES+KRQRK  D+NL RRASKRLAGLQAEPVL+VKTGRRAR  ACEESD
Sbjct: 206 HKCPIENGATKGESRKRQRKTNDINLPRRASKRLAGLQAEPVLQVKTGRRARSVACEESD 265

Query: 309 KQAVSSTTKSVSQCLENPDVKHGTKGIIDPSKSINTNPDSSRKDDVKQDPILKLPVEDLL 368
           KQ  S+T     QC ENPDVKH T    DPSK INT+PDS  K  +  D           
Sbjct: 266 KQVASTTKLVAFQCPENPDVKHKTNSTADPSK-INTSPDSGGKAHICVD----------- 325

Query: 369 ADPCIAFAVKTLTGGVFDASISSELSLMPNDIDRPSNESRSLGPNEKLPSSELPVNRIGV 428
               ++  +K  +   ++     E SL P D+         L  +  +   E   N    
Sbjct: 326 ----LSIVMKMKSADAYEQQPKPESSLPPEDV---------LEKHVGMVEIEDKAN---- 385

Query: 429 VEKLESTLELPVGEILADPCIEFAIKTLTGEI 446
           V+K    L+LP+ ++L DPCI FA+KTLTG++
Sbjct: 386 VKKQGPLLKLPMEDLLTDPCIAFAVKTLTGDV 387

[Close]

BLAST of Cp4.1LG09g00820 vs. NCBI nr
Match: gi|449446179|ref|XP_004140849.1| (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X4 [Cucumis sativus])

HSP 1 Score: 310.1 bits (793), Expect = 7.6e-81
Identity = 189/379 (49.87%), Postives = 234/379 (61.74%), Query Frame = 1


Query: 82  LPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREVHRYLTSGTVSRLAYKSRDQRG 141
           LPPGW  +++  K+    ++D  YIDPVNGN  RSIR+VHRYLTSG VSRL +KSR+QR 
Sbjct: 10  LPPGWTVKVKVRKSG---KKDKSYIDPVNGNALRSIRDVHRYLTSGKVSRLTHKSRNQRD 69

Query: 142 IDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNENLLEPREITNDEAIFPNATSVGESMP 201
            ++EFQHD+ISSP V KKE+  IGKARRQIIW+EN  EP E+ + EA+FPNA SVGE++ 
Sbjct: 70  NNIEFQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFPNA-SVGETVL 129

Query: 202 HSEPDSSHGEIGIDVHCSTLPE-----QSDGKNDFFELVTTPSD----------GPTKNE 261
              PD S G I    HCST  +     QSDGKND  E+V TP +          G TK E
Sbjct: 130 FPIPDPSLGGISAKPHCSTPTDAKGLKQSDGKNDISEIVLTPKEFIQHKCPIENGATKGE 189

Query: 262 SKKRQRKPKDMNLTRRASKRLAGLQAEPVLEVKTGRRARPGACEESDKQAVSSTTKSVSQ 321
           S+KRQRK  D+NL RRASKRLAGLQAEPVL+VKTGRRAR  ACEESDKQ  S+T     Q
Sbjct: 190 SRKRQRKTNDINLPRRASKRLAGLQAEPVLQVKTGRRARSVACEESDKQVASTTKLVAFQ 249

Query: 322 CLENPDVKHGTKGIIDPSKSINTNPDSSRKDDVKQDPILKLPVEDLLADPCIAFAVKTLT 381
           C ENPDVKH T    DPSK INT+PDS  K  +  D               ++  +K  +
Sbjct: 250 CPENPDVKHKTNSTADPSK-INTSPDSGGKAHICVD---------------LSIVMKMKS 309

Query: 382 GGVFDASISSELSLMPNDIDRPSNESRSLGPNEKLPSSELPVNRIGVVEKLESTLELPVG 441
              ++     E SL P D+         L  +  +   E   N    V+K    L+LP+ 
Sbjct: 310 ADAYEQQPKPESSLPPEDV---------LEKHVGMVEIEDKAN----VKKQGPLLKLPME 355

Query: 442 EILADPCIEFAIKTLTGEI 446
           ++L DPCI FA+KTLTG++
Sbjct: 370 DLLTDPCIAFAVKTLTGDV 355

[Close]

BLAST of Cp4.1LG09g00820 vs. NCBI nr
Match: gi|1009122532|ref|XP_015878051.1| (PREDICTED: methyl-CpG-binding domain-containing protein 13 [Ziziphus jujuba])

HSP 1 Score: 266.2 bits (679), Expect = 1.3e-67
Identity = 204/567 (35.98%), Postives = 293/567 (51.68%), Query Frame = 1


Query: 5   KSEEWLPPGWTVKVKVRKSGKKDKYYYEPSSQMRFNSRAEVFRYLKTAAICYPESEESRT 64
           ++E+WLPPGWTV+VK+R +G+KDKYY+ P    +FNS+AEV RYL +  I     +   T
Sbjct: 3   ETEDWLPPGWTVEVKIRNNGRKDKYYHAPLDGPKFNSKAEVSRYLSSKQII----DGKGT 62

Query: 65  FKQSQNNVEVKKTLAKGLPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREVHRYL 124
           FK+ + NV V+K + KGLPPGWI+EIR TK A +IRRD +YIDP+NG +FRS+++V+RYL
Sbjct: 63  FKRFKRNVVVEKVIPKGLPPGWIKEIRMTKKAGKIRRDPYYIDPINGKIFRSMKDVYRYL 122

Query: 125 TSGTVSRLAYKSRDQRGIDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNENLLEPREIT 184
            +  +  L  K +     D+E+  D+ SSP V K +  A+GK RRQI ++++     E+ 
Sbjct: 123 ETEELGSLGKKLKGSSDEDLEY--DETSSPVVSKGQKLAVGKTRRQIDFSQSS-NSNEML 182

Query: 185 NDEAIFPNATSVGESMPHSEPDSSHGE-----IGIDVHCSTLPEQSDGKN---------- 244
            DE I PN+T  G+     E  S  G         D+  + + EQ    N          
Sbjct: 183 KDEQI-PNSTFTGQCQFPLEHTSDQGRMSNELRNSDIQEAKVSEQELQSNSPKSTSASFP 242

Query: 245 --DFFELVTTPSDGPTKNESKK------RQRKPKDMNLTRRASKRLAGLQAEPVLEVKTG 304
             D  +   +P     K+E  +      + +  K+ NL RRASKRLAGL+ +P+ E+K  
Sbjct: 243 AGDVLQGEQSPECVLAKHERGRTRLGLSKSKAKKETNLPRRASKRLAGLEVDPIPELKPK 302

Query: 305 RRARPGACEESDKQAV----SSTTKSVSQCLENPD---VKHGTKGIIDPSKSINTNPDSS 364
            RAR  A ++S    V    SS+T       E PD   V+  T  I+D S+S      S+
Sbjct: 303 TRARRSAVKQSGDDGVNQSGSSSTPGSDCAFEQPDQLEVEPETYCIVDTSESTELPLQSN 362

Query: 365 RKDDVKQDPI----------------------LKLPVE----DLLADPCIAFAVKTLTGG 424
           ++  +  D +                      L+LP+E    +LL DPCIAFA+KTLTG 
Sbjct: 363 KRRRLPVDLVTPEKQVSEAETGINCDDRANEKLELPIELPLGELLTDPCIAFAIKTLTGV 422

Query: 425 VFDASISSELSL------------------MPNDIDRPSNESRSLGPNEKLPSSEL--PV 484
            FD   SSE++                   +  +++      R LGP+  LP   L  P 
Sbjct: 423 AFDTYKSSEVASAGSNSRDHSSGNLVTPIELAGNVETGKEAERELGPSVVLPMGVLSFPE 482

Query: 485 NRIGVV-------EKLESTLELPVGEILADPCIEFAIKTLTGEIPLDDSPDIEDYF-HQL 487
            + G +       EK    +E P      DPCIEFAIKTLT     D  PDI++YF  QL
Sbjct: 483 RQAGKIDTDKNADEKSGYPIEFPSSCSWLDPCIEFAIKTLTA----DAVPDIQNYFQQQL 542

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g00820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MBD7_ARATH	8.6e-08	35.83	Methyl-CpG-binding domain-containing protein 7 OS=Arabidopsis thaliana GN=MBD7 P...	[more]
MBD6_ARATH	3.3e-07	30.77	Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana GN=MBD6 P...	[more]
MBD13_ARATH	3.3e-07	29.20	Methyl-CpG-binding domain-containing protein 13 OS=Arabidopsis thaliana GN=MBD13...	[more]

BLAST of Cp4.1LG09g00820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6H4_CUCSA	1.4e-110	56.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G181990 PE=4 SV=1	[more]
A0A061G045_THECC	1.1e-59	33.83	Methyl-CPG-binding domain protein 13, putative isoform 2 OS=Theobroma cacao GN=T...	[more]
A0A061G828_THECC	4.8e-58	33.61	Methyl-CPG-binding domain protein 13, putative isoform 1 OS=Theobroma cacao GN=T...	[more]
A0A0L9VIJ9_PHAAN	3.9e-52	30.35	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g078700 PE=4 SV=1	[more]
V7C2B4_PHAVU	1.3e-50	31.96	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G117900g PE=4 SV=1	[more]

BLAST of Cp4.1LG09g00820 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59800.1	4.8e-09	35.83	methyl-CPG-binding domain 7	[more]
AT5G59380.1	1.8e-08	30.77	methyl-CPG-binding domain 6	[more]
AT5G52230.1	1.8e-08	29.20	methyl-CPG-binding domain protein 13	[more]
AT3G46580.1	8.5e-06	35.21	methyl-CPG-binding domain protein 5	[more]

BLAST of Cp4.1LG09g00820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778679537\|ref\|XP_011651143.1\|	6.8e-130	58.91	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis s...	[more]
gi\|778679540\|ref\|XP_011651144.1\|	2.0e-110	56.60	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucumis s...	[more]
gi\|778679543\|ref\|XP_011651145.1\|	5.1e-93	53.57	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X3 [Cucumis s...	[more]
gi\|449446179\|ref\|XP_004140849.1\|	7.6e-81	49.87	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X4 [Cucumis s...	[more]
gi\|1009122532\|ref\|XP_015878051.1\|	1.3e-67	35.98	PREDICTED: methyl-CpG-binding domain-containing protein 13 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR016177	DNA-bd_dom_sf
IPR001739	Methyl_CpG_DNA-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g00820.1	Cp4.1LG09g00820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001739	Methyl-CpG DNA binding	GENE3D	G3DSA:3.30.890.10		coord: 59..126 score: 3.5E-11coord: 8..52 score: 3.1
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 77..128 score: 4.4E-8coord: 6..53 score: 4.
IPR001739	Methyl-CpG DNA binding	PROFILE	PS50982	MBD	coord: 1..70 score: 14.432coord: 72..151 score: 15
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 7..54 score: 1.31E-12coord: 71..128 score: 2.62
None	No IPR available	PANTHER	PTHR34067	FAMILY NOT NAMED	coord: 1..288 score: 2.5E-55coord: 333..454 score: 2.5
None	No IPR available	PANTHER	PTHR34067:SF1	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 13	coord: 333..454 score: 2.5E-55coord: 1..288 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG09g00820	Cucsa.107660	Cucumber (Gy14) v1	cgycpeB0240
Cp4.1LG09g00820	Cucsa.302890	Cucumber (Gy14) v1	cgycpeB0788
Cp4.1LG09g00820	CmaCh16G001310	Cucurbita maxima (Rimu)	cmacpeB339
Cp4.1LG09g00820	CmaCh18G012410	Cucurbita maxima (Rimu)	cmacpeB415
Cp4.1LG09g00820	CmoCh16G001360	Cucurbita moschata (Rifu)	cmocpeB303
Cp4.1LG09g00820	CmoCh18G012640	Cucurbita moschata (Rifu)	cmocpeB376
Cp4.1LG09g00820	Cla006190	Watermelon (97103) v1	cpewmB032
Cp4.1LG09g00820	Cla011473	Watermelon (97103) v1	cpewmB036
Cp4.1LG09g00820	Csa3G181990	Cucumber (Chinese Long) v2	cpecuB039
Cp4.1LG09g00820	Csa5G154900	Cucumber (Chinese Long) v2	cpecuB046
Cp4.1LG09g00820	MELO3C005647	Melon (DHL92) v3.5.1	cpemeB020
Cp4.1LG09g00820	MELO3C006897	Melon (DHL92) v3.5.1	cpemeB043
Cp4.1LG09g00820	ClCG01G002970	Watermelon (Charleston Gray)	cpewcgB023
Cp4.1LG09g00820	ClCG05G007960	Watermelon (Charleston Gray)	cpewcgB046
Cp4.1LG09g00820	CSPI05G05700	Wild cucumber (PI 183967)	cpecpiB040
Cp4.1LG09g00820	CSPI03G16830	Wild cucumber (PI 183967)	cpecpiB034
Cp4.1LG09g00820	Lsi05G012390	Bottle gourd (USVL1VR-Ls)	cpelsiB035
Cp4.1LG09g00820	MELO3C006898.2	Melon (DHL92) v3.6.1	cpemedB050
Cp4.1LG09g00820	MELO3C005647.2	Melon (DHL92) v3.6.1	cpemedB024
Cp4.1LG09g00820	CsaV3_3G017000	Cucumber (Chinese Long) v3	cpecucB0039
Cp4.1LG09g00820	CsaV3_5G003080	Cucumber (Chinese Long) v3	cpecucB0045
Cp4.1LG09g00820	Bhi01G000972	Wax gourd	cpewgoB0025
Cp4.1LG09g00820	CsGy5G002990	Cucumber (Gy14) v2	cgybcpeB584
Cp4.1LG09g00820	CsGy3G016920	Cucumber (Gy14) v2	cgybcpeB287
Cp4.1LG09g00820	Carg02512	Silver-seed gourd	carcpeB1267
Cp4.1LG09g00820	Carg22094	Silver-seed gourd	carcpeB1038

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG09g00820	Cp4.1LG14g06090	Cucurbita pepo (Zucchini)	cpecpeB023
Cp4.1LG09g00820	Cp4.1LG05g03710	Cucurbita pepo (Zucchini)	cpecpeB058

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g00820	Cucurbita pepo (Zucchini)	cpecpeB052
Cp4.1LG09g00820	Cucurbita pepo (Zucchini)	cpecpeB057
Cp4.1LG09g00820	Cucurbita maxima (Rimu)	cmacpeB253
Cp4.1LG09g00820	Cucurbita maxima (Rimu)	cmacpeB598
Cp4.1LG09g00820	Cucurbita moschata (Rifu)	cmocpeB546
Cp4.1LG09g00820	Bottle gourd (USVL1VR-Ls)	cpelsiB039
Cp4.1LG09g00820	Watermelon (Charleston Gray)	cpewcgB044
Cp4.1LG09g00820	Silver-seed gourd	carcpeB0994
Cp4.1LG09g00820	Silver-seed gourd	carcpeB1373