CmaCh18G012410 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G012410
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Methyl-CpG-binding domain-containing 13-like protein
Location	Cma_Chr18 : 9720370 .. 9723248 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTATTAAAAGCTTCGATATTTCCCCTTTACTCTTCCGTTACAGCAGACGTTATTGGAACCTCTAGCGGTTTCAATTCTCTGCTTTACTCCCAGATACGTTGCCATAGTCCTCCACTTCAATCGGCGGTACATTTGAATCGAGTTGCGTTTTGAACTTACAGATGGGTGTAAAGAACAATCGTAAGATCCAGAAAAGAGGGTCGTAGTCAAATGTGAAAGGGGAGAGTTGTAGAGGATAATGAATGGGGTCCGACACGTTTATATGCCTCGCAGGGTGCTTCTCAGAACACGTGGTTAGAAAGAATATTGTGTCGGAATCCTCCATTTTTATAGCCTCCTGAAGGGATTTTACACCAAAATCAGACTCTTGGCGAGCCCAAAAGAGAGAAAAACAGAGAGGGTGAAGAGGGTTATTGAGATTGGCCGGTGGGTTTCGCCGGAAAGTCTGAATGATGAACCAGAAGTCAGAGGAGTGGCTACCCCCTGGCTGGACGGTGAAGGTCAAAGTGAGGAAGAGTGGCAAAAAGGATAAGGCACTGGTTTTCATTTCCTTTTGCTTGGATTTTTACTTGCATTTTATGAATCTATAGATCTTTGCCTCTTGATTTACTTTCTTTTTCATGCTGAACTTGCATAGATTCTTGTGCTGTTTCTGAGTTAACAACATATCGTTGTTCTTCCTGTTCTTGACTATGAATTCTACATGAGATTTCATTATGATTTGCAATGCTAATAGGAAAAGATCTGATTCTAATGTTGCAGTATTATTATGAACCCTCAAGTCAAATGAAATTCAATTCTAGAGCAGAGGTGTTTAGATATCTCAAAACTGCTGCAATCTGTTATCCTGAATCTGAAGAGAGCAGAACCTTCAAGCAATCACAGAACAATGTCTGTCAAAAAAGTCTACCCTCTACTCTATTTCTTTTGTTTTCAATTTTATTGTTATGAACTTCATTGATTTTTCTTCAAAAACTTGTATTATTCAAGCAATCTAGGTGGAAGTTAAGAAGACTTTAGCAGAAGGGTTACCTCCTGGATGGATCAGGGAAATCAGAGAAACCAAGACTGCTAATAGGATAAGAAGAGATTCAGTAATTCATCATCTATTTCCTTTATGTCGTTTTCATTTATCGTGTTGTTTCGACTTCGGTTATGCTCTCGAACCGTGAACTTTGTCTAATCCGTATATTTAGTGACCATAAGATTGTAAAATGCTGAAGAACAAGAAAGTTTACAGATGAACTTTTGTTTGCAGTTTTACATTGATCCTGTTAATGGAAATGTATTTCGCTCGATAAGGGAAGTACATCGGTATCTAACAAGTGGAACGGTGAGCCGATTAGTGTATAAATCAAGGGATCAGAGAGGCGTCGACGTTGAGTTTCAACATGATGATATCTCTGTGAGTTCTCTAATGATGCTCCAAGTTCGAGTTTCAACAAACTTCGGTTTTATCACCTTTGCCATTTTACTAAATTTTTGTCTTTCCCTCTCGTTCATAGTCGCCCGCTGTCCCCAAGAAAGAGATGCAAGCGATTGGCAAAGCAAGGAGACAGATAATATGGAACGAGAACTTGTTGGAACCCCATGAAATAACGAACAATGAAGCTATTTTTCCGAATGCTACGAGTGTCAGAGAAAGCATACCTCATTCTGAACCTGATTCGAGTCATGGTATAGTTTTGAACATGCTACTTTAGATAGCAAATTCTTTCATTCCTTATGGATTTGACCCCTTCTGCCAGTTGAAGGTTAAGGTGAATTTAGTGACTGCTGCAGGAGAAATAGGCAGTGACGTGCTTTGTTCAACTCTACCAGAGCAATCAGATAGAAAGAATGATTTTTCTGAACTTGTGACGACTCCTAGTGATGGACCAACAAAGAATGAGAGTAAAAAGAGACAAAGGAAAACTAAAGACATGAACTTGACTCGCCGTGCTTCAAAACGACTTGCAGGGCTCCAAGCTGAGCCAGTGCTTGAAGTGAAAACAGGTCGCCGAGCACGCCCAGGTGCATGTGAAGAGTTTGATAAGAAAGCAGTCAGTAGTACAACTAAGTCAGTGTCTCAATGTCTTGAGAATCCTGATGTCAAGCATGAGACAAAGGGCATCATTGATCCTACTAAAAGTATTAACACAAACACAGATTCAAGTAGAAAAGATGATGTAAAACAAGGCTCTATTCTTAAATTGCCAGTGGAGGACTTATTGGCTGATCCTTGCATTGCATTTGCAGTTAAAACTCTAACTGGAGAAGTTTTCGACGCATCCATAAGCTCAGAAGTTTCACTGATACCAAACAATATCGATCGTCCTTCAGCTGCCTTCACTTCAAATGAGAGTAGAAGCCTAGGACCTAATGAGAAGTTGCCATCTTCGGAACTTCCTGTTAATCGAGTCGGGGTAGTCGAGAAGCTAGAATCAACTTTGGAGTTGCCAGTAGGGGAAATATTGGCAGACCCTTGCATAGAATTTGCTATTAAAACTCTAACAGGGGAAATCCCTCTTGATGACAGTCCAGATATTGAGGATTATTTTCACCAACTTAGCACCTCGAAGACGCAAGGATCTAGTTCAAATGCCTTGAATTGTTTCGGTTCGGATCACTTCTACAAGATGAATGTTCAAAGCCAGAAGCGGCAGGTTATTCAAGCTCTGGAGGCATCTCCAAATATTAACTTCCAAAGCTGTGGAACTGGTTTACACCAACAAGAATGTAACAACTTTATAAGAATAAAGGATGACAAAGCTTAGATCATTTGTATGAAACATGATAGGCCAACATTGCCTATGAAAACATTTTCAGGATCAAACGCATGTAATTCTGTACTTGTTTGGTTGGGAAATCTAATGCTACCAATTAGCCATTGAATCAA

mRNA sequence

CTTATTAAAAGCTTCGATATTTCCCCTTTACTCTTCCGTTACAGCAGACGTTATTGGAACCTCTAGCGGTTTCAATTCTCTGCTTTACTCCCAGATACGTTGCCATAGTCCTCCACTTCAATCGGCGGTACATTTGAATCGAGTTGCGTTTTGAACTTACAGATGGGTGTAAAGAACAATCGTAAGATCCAGAAAAGAGGGTCGTAGTCAAATGTGAAAGGGGAGAGTTGTAGAGGATAATGAATGGGGTCCGACACGTTTATATGCCTCGCAGGGTGCTTCTCAGAACACGTGGTTAGAAAGAATATTGTGTCGGAATCCTCCATTTTTATAGCCTCCTGAAGGGATTTTACACCAAAATCAGACTCTTGGCGAGCCCAAAAGAGAGAAAAACAGAGAGGGTGAAGAGGGTTATTGAGATTGGCCGGTGGGTTTCGCCGGAAAGTCTGAATGATGAACCAGAAGTCAGAGGAGTGGCTACCCCCTGGCTGGACGGTGAAGGTCAAAGTGAGGAAGAGTGGCAAAAAGGATAAGTATTATTATGAACCCTCAAGTCAAATGAAATTCAATTCTAGAGCAGAGGTGTTTAGATATCTCAAAACTGCTGCAATCTGTTATCCTGAATCTGAAGAGAGCAGAACCTTCAAGCAATCACAGAACAATGTGGAAGTTAAGAAGACTTTAGCAGAAGGGTTACCTCCTGGATGGATCAGGGAAATCAGAGAAACCAAGACTGCTAATAGGATAAGAAGAGATTCATTTTACATTGATCCTGTTAATGGAAATGTATTTCGCTCGATAAGGGAAGTACATCGGTATCTAACAAGTGGAACGGTGAGCCGATTAGTGTATAAATCAAGGGATCAGAGAGGCGTCGACGTTGAGTTTCAACATGATGATATCTCTTCGCCCGCTGTCCCCAAGAAAGAGATGCAAGCGATTGGCAAAGCAAGGAGACAGATAATATGGAACGAGAACTTGTTGGAACCCCATGAAATAACGAACAATGAAGCTATTTTTCCGAATGCTACGAGTGTCAGAGAAAGCATACCTCATTCTGAACCTGATTCGAGTCATGGAGAAATAGGCAGTGACGTGCTTTGTTCAACTCTACCAGAGCAATCAGATAGAAAGAATGATTTTTCTGAACTTGTGACGACTCCTAGTGATGGACCAACAAAGAATGAGAGTAAAAAGAGACAAAGGAAAACTAAAGACATGAACTTGACTCGCCGTGCTTCAAAACGACTTGCAGGGCTCCAAGCTGAGCCAGTGCTTGAAGTGAAAACAGGTCGCCGAGCACGCCCAGGTGCATGTGAAGAGTTTGATAAGAAAGCAGTCAGTAGTACAACTAAGTCAGTGTCTCAATGTCTTGAGAATCCTGATGTCAAGCATGAGACAAAGGGCATCATTGATCCTACTAAAAGTATTAACACAAACACAGATTCAAGTAGAAAAGATGATGTAAAACAAGGCTCTATTCTTAAATTGCCAGTGGAGGACTTATTGGCTGATCCTTGCATTGCATTTGCAGTTAAAACTCTAACTGGAGAAGTTTTCGACGCATCCATAAGCTCAGAAGTTTCACTGATACCAAACAATATCGATCGTCCTTCAGCTGCCTTCACTTCAAATGAGAGTAGAAGCCTAGGACCTAATGAGAAGTTGCCATCTTCGGAACTTCCTGTTAATCGAGTCGGGGTAGTCGAGAAGCTAGAATCAACTTTGGAGTTGCCAGTAGGGGAAATATTGGCAGACCCTTGCATAGAATTTGCTATTAAAACTCTAACAGGGGAAATCCCTCTTGATGACAGTCCAGATATTGAGGATTATTTTCACCAACTTAGCACCTCGAAGACGCAAGGATCTAGTTCAAATGCCTTGAATTGTTTCGGTTCGGATCACTTCTACAAGATGAATGTTCAAAGCCAGAAGCGGCAGGTTATTCAAGCTCTGGAGGCATCTCCAAATATTAACTTCCAAAGCTGTGGAACTGGTTTACACCAACAAGAATGTAACAACTTTATAAGAATAAAGGATGACAAAGCTTAGATCATTTGTATGAAACATGATAGGCCAACATTGCCTATGAAAACATTTTCAGGATCAAACGCATGTAATTCTGTACTTGTTTGGTTGGGAAATCTAATGCTACCAATTAGCCATTGAATCAA

Coding sequence (CDS)

ATGATGAACCAGAAGTCAGAGGAGTGGCTACCCCCTGGCTGGACGGTGAAGGTCAAAGTGAGGAAGAGTGGCAAAAAGGATAAGTATTATTATGAACCCTCAAGTCAAATGAAATTCAATTCTAGAGCAGAGGTGTTTAGATATCTCAAAACTGCTGCAATCTGTTATCCTGAATCTGAAGAGAGCAGAACCTTCAAGCAATCACAGAACAATGTGGAAGTTAAGAAGACTTTAGCAGAAGGGTTACCTCCTGGATGGATCAGGGAAATCAGAGAAACCAAGACTGCTAATAGGATAAGAAGAGATTCATTTTACATTGATCCTGTTAATGGAAATGTATTTCGCTCGATAAGGGAAGTACATCGGTATCTAACAAGTGGAACGGTGAGCCGATTAGTGTATAAATCAAGGGATCAGAGAGGCGTCGACGTTGAGTTTCAACATGATGATATCTCTTCGCCCGCTGTCCCCAAGAAAGAGATGCAAGCGATTGGCAAAGCAAGGAGACAGATAATATGGAACGAGAACTTGTTGGAACCCCATGAAATAACGAACAATGAAGCTATTTTTCCGAATGCTACGAGTGTCAGAGAAAGCATACCTCATTCTGAACCTGATTCGAGTCATGGAGAAATAGGCAGTGACGTGCTTTGTTCAACTCTACCAGAGCAATCAGATAGAAAGAATGATTTTTCTGAACTTGTGACGACTCCTAGTGATGGACCAACAAAGAATGAGAGTAAAAAGAGACAAAGGAAAACTAAAGACATGAACTTGACTCGCCGTGCTTCAAAACGACTTGCAGGGCTCCAAGCTGAGCCAGTGCTTGAAGTGAAAACAGGTCGCCGAGCACGCCCAGGTGCATGTGAAGAGTTTGATAAGAAAGCAGTCAGTAGTACAACTAAGTCAGTGTCTCAATGTCTTGAGAATCCTGATGTCAAGCATGAGACAAAGGGCATCATTGATCCTACTAAAAGTATTAACACAAACACAGATTCAAGTAGAAAAGATGATGTAAAACAAGGCTCTATTCTTAAATTGCCAGTGGAGGACTTATTGGCTGATCCTTGCATTGCATTTGCAGTTAAAACTCTAACTGGAGAAGTTTTCGACGCATCCATAAGCTCAGAAGTTTCACTGATACCAAACAATATCGATCGTCCTTCAGCTGCCTTCACTTCAAATGAGAGTAGAAGCCTAGGACCTAATGAGAAGTTGCCATCTTCGGAACTTCCTGTTAATCGAGTCGGGGTAGTCGAGAAGCTAGAATCAACTTTGGAGTTGCCAGTAGGGGAAATATTGGCAGACCCTTGCATAGAATTTGCTATTAAAACTCTAACAGGGGAAATCCCTCTTGATGACAGTCCAGATATTGAGGATTATTTTCACCAACTTAGCACCTCGAAGACGCAAGGATCTAGTTCAAATGCCTTGAATTGTTTCGGTTCGGATCACTTCTACAAGATGAATGTTCAAAGCCAGAAGCGGCAGGTTATTCAAGCTCTGGAGGCATCTCCAAATATTAACTTCCAAAGCTGTGGAACTGGTTTACACCAACAAGAATGTAACAACTTTATAAGAATAAAGGATGACAAAGCTTAG

Protein sequence

MMNQKSEEWLPPGWTVKVKVRKSGKKDKYYYEPSSQMKFNSRAEVFRYLKTAAICYPESEESRTFKQSQNNVEVKKTLAEGLPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREVHRYLTSGTVSRLVYKSRDQRGVDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNENLLEPHEITNNEAIFPNATSVRESIPHSEPDSSHGEIGSDVLCSTLPEQSDRKNDFSELVTTPSDGPTKNESKKRQRKTKDMNLTRRASKRLAGLQAEPVLEVKTGRRARPGACEEFDKKAVSSTTKSVSQCLENPDVKHETKGIIDPTKSINTNTDSSRKDDVKQGSILKLPVEDLLADPCIAFAVKTLTGEVFDASISSEVSLIPNNIDRPSAAFTSNESRSLGPNEKLPSSELPVNRVGVVEKLESTLELPVGEILADPCIEFAIKTLTGEIPLDDSPDIEDYFHQLSTSKTQGSSSNALNCFGSDHFYKMNVQSQKRQVIQALEASPNINFQSCGTGLHQQECNNFIRIKDDKA

Homology

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BLAST of CmaCh18G012410 vs. Swiss-Prot
Match: MBD13_ARATH (Methyl-CpG-binding domain-containing protein 13 OS=Arabidopsis thaliana GN=MBD13 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-08
Identity = 57/166 (34.34%), Postives = 72/166 (43.37%), Query Frame = 1


Query: 318 KGIIDPTKSINTNTDSSRKDDVKQGSILKLPVEDLLADPCIAFAVKTLTGEVFDASISSE 377
           +G        +TN+ SS  D           + DL  DPCIAFA+KTLTGE      +  
Sbjct: 580 RGTCSEVMEKSTNSFSSAFDST---------LADLCKDPCIAFAIKTLTGESLCLLNTPA 639

Query: 378 VSLIPNNIDRPSAAFTSNESRSLGPNEKLPSSELPVNRVGVVEKLESTLELPVGEILADP 437
           +S  P N        T  +  S  P       E P N     EKL      P   I  DP
Sbjct: 640 ISSNPIN------NHTKQKGVSFTP-------ETPGNVNTCSEKLVFPSPPPGANIWQDP 699

Query: 438 CIEFAIKTLTGEIPLD-DSPDIEDYFHQL--STSKTQGSSSNALNC 481
           CI+FAIKTLTG IP+  D PD +     +  +T+ TQ +     NC
Sbjct: 700 CIDFAIKTLTGAIPIGLDEPDTKSKSQGMTSTTAATQEAKGRQNNC 723

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BLAST of CmaCh18G012410 vs. Swiss-Prot
Match: MBD6_ARATH (Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana GN=MBD6 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-07
Identity = 41/130 (31.54%), Postives = 53/130 (40.77%), Query Frame = 1


Query: 7   EEWLPPGWTVKVKVRKSGKK----DKYYYEPSSQMKFNSRAEVFRYLKTAAICYPESEES 66
           + WLPPGW V+ K+R SG      DKYYYEP++  KF SR EV  YL+         +  
Sbjct: 78  DNWLPPGWRVEDKIRTSGATAGSVDKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAE 137

Query: 67  RTF-------KQSQNNVEVKKTLAEGLPP-----------------------GWIREIRE 103
            T+        Q  N V    T+    PP                       GWI  I +
Sbjct: 138 NTYFNPDHFEGQGSNRVTRTATVPPPPPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGD 197

[Close]

BLAST of CmaCh18G012410 vs. Swiss-Prot
Match: MBD7_ARATH (Methyl-CpG-binding domain-containing protein 7 OS=Arabidopsis thaliana GN=MBD7 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.3e-07
Identity = 41/120 (34.17%), Postives = 62/120 (51.67%), Query Frame = 1


Query: 10  LPPGWTVK-VKVRKSGKKDKYYYEPSSQMKFNSRAEVFRYLKTAAICYPESEESRTFKQS 69
           LP GW+V+ V  + S   DKYY E  +  +F S   V RYL+         E   + +Q 
Sbjct: 116 LPRGWSVEEVPRKNSHYIDKYYVERKTGKRFRSLVSVERYLR---------ESRNSIEQQ 175

Query: 70  QNNVEVKKTLAEG--LPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREVHRYLTS 127
              ++ ++  ++   LP GWI E +  ++++ I  D  YI+P  GN FRS+  V RYL S
Sbjct: 176 LRVLQNRRGHSKDFRLPDGWIVEEKPRRSSSHI--DRSYIEPGTGNKFRSMAAVERYLIS 224

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BLAST of CmaCh18G012410 vs. TrEMBL
Match: A0A0A0L6H4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G181990 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 4.1e-105
Identity = 231/431 (53.60%), Postives = 280/431 (64.97%), Query Frame = 1


Query: 37  MKFNSRAEVFRYLKTAAICYPESEESRTFKQSQNNVEVKKTLAEGLPPGWIREIRETKTA 96
           M+FNSRAEVFRYLKTAAIC+PESEESRT K+  NNVEVKKT+A+ LP GWI EIRETKTA
Sbjct: 1   MRFNSRAEVFRYLKTAAICHPESEESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTA 60

Query: 97  NRIRRDSFYIDPVNGNVFRSIREVHRYLTSGTVSRLVYKSRDQRGVDVEFQHDDISSPAV 156
           NRIRRDS YIDPVNGN  RSIR+VHRYLTSG VSRL +KSR+QR  ++EFQHD+ISSP V
Sbjct: 61  NRIRRDSSYIDPVNGNALRSIRDVHRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVV 120

Query: 157 PKKEMQAIGKARRQIIWNENLLEPHEITNNEAIFPNATSVRESIPHSEPDSSHGEIGSDV 216
            KKE+  IGKARRQIIW+EN  EP E+ + EA+FPNA SV E++    PD S G I +  
Sbjct: 121 SKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFPNA-SVGETVLFPIPDPSLGGISAKP 180

Query: 217 LCSTLPE-----QSDRKNDFSELVTTPSD----------GPTKNESKKRQRKTKDMNLTR 276
            CST  +     QSD KND SE+V TP +          G TK ES+KRQRKT D+NL R
Sbjct: 181 HCSTPTDAKGLKQSDGKNDISEIVLTPKEFIQHKCPIENGATKGESRKRQRKTNDINLPR 240

Query: 277 RASKRLAGLQAEPVLEVKTGRRARPGACEEFDKKAVSSTTKSVSQCLENPDVKHETKGII 336
           RASKRLAGLQAEPVL+VKTGRRAR  ACEE DK+  S+T     QC ENPDVKH+T    
Sbjct: 241 RASKRLAGLQAEPVLQVKTGRRARSVACEESDKQVASTTKLVAFQCPENPDVKHKTNSTA 300

Query: 337 DPTKSINTNTDSSRKDDVKQGSILKLPVEDLLADPCI--AFAVKTLTGEVFDASISSEVS 396
           DP+K INT+ DS  K                 A  C+  +  +K  + + ++     E S
Sbjct: 301 DPSK-INTSPDSGGK-----------------AHICVDLSIVMKMKSADAYEQQPKPESS 360

Query: 397 LIPNNIDRPSAAFTSNESRSLGPNEKLPSSELPVNRVGVVEKLESTLELPVGEILADPCI 451
           L P ++          E ++                   V+K    L+LP+ ++L DPCI
Sbjct: 361 LPPEDVLEKHVGMVEIEDKA------------------NVKKQGPLLKLPMEDLLTDPCI 394

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BLAST of CmaCh18G012410 vs. TrEMBL
Match: A0A061G045_THECC (Methyl-CPG-binding domain protein 13, putative isoform 2 OS=Theobroma cacao GN=TCM_015148 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.7e-58
Identity = 193/599 (32.22%), Postives = 296/599 (49.42%), Query Frame = 1


Query: 1   MMNQKSEEWLPPGWTVKVKVRKSGKKDKYYYEPSSQMKFNSRAEVFRYLKTAAICYPESE 60
           M +Q +++WLPPGW V+V+ R++GKKDK YY P  +++F SRAEV RYL     C  E +
Sbjct: 1   MEDQTTDDWLPPGWKVEVRQRRNGKKDKCYYAPCGELRFISRAEVSRYLDKCG-CKTEEK 60

Query: 61  ESRTFKQSQNNVEVKKTLAEGLPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREV 120
           E+ + KQS  NV V+K  AEGLPPGWI+EIR TK A+R+R+D FY DPV+G VFRS+++ 
Sbjct: 61  ENGSGKQSSKNVTVEKAAAEGLPPGWIKEIRITKRAHRVRKDPFYTDPVSGYVFRSMKDA 120

Query: 121 HRYLTSGTVSRLVYKSRDQRGVDVEFQHDDISSPA-VPKKEMQAIG---KARRQIIWNEN 180
            RY+ +G + +L +K +D+   D + + D+I  PA V ++++   G   +  RQ    E 
Sbjct: 121 LRYVETGELGKLAFKPKDKGSNDEDLEEDNICEPAHVERQKIDVNGITDETERQSA--EQ 180

Query: 181 LLEPHEITNNEAIFPNATSVRESIPHSEPDSSH-GEIGSDVLCSTLPEQSDRKN----DF 240
           +     IT  E +  +A++  ++       + H   +G+++    L E    +     D 
Sbjct: 181 VSNLSGITKEEEMLASASTGEQTSLSKHATNQHKAGVGAELSSLKLSEAKGSEQIGGKDS 240

Query: 241 SELV-------------TTPSDGPTKNESKKRQR---KTK---DMNLTRRASKRLAGLQA 300
            E V              +  +G  K+E++K Q+   KTK     N+ RRASKRLAG+  
Sbjct: 241 EEGVHASGNVVGVLLDKQSSENGMIKDETEKTQQGRGKTKLKKAFNIPRRASKRLAGVAL 300

Query: 301 EPVLEVKTGRRARPGACEEFDKKAVSSTTKSVSQCL-------ENPDVKHETKG------ 360
           +P  E+KT R  R    +  +    ++ + S  +C+       + P+   ET        
Sbjct: 301 DPTPELKTARARRSSFKQLSEVIPDAAESSSPGRCIHGASKQPDQPESALETSCDLDSPK 360

Query: 361 ----IIDPTK---------------SINTNTDSSR------------------KDDVKQ- 420
               I+ P                 ++ T  D+                    + DVK  
Sbjct: 361 SKELILAPNNMLSSGEMLTMNGHVGNLETEADADNGVLPLGNAAIPGVHSGKVESDVKAS 420

Query: 421 ---GSILKLPVEDLLADPCIAFAVKTLTGEVFDASISSEVSLIPN---------NIDRPS 480
              GS++ +P+ DL  DPCIAFA++TLTG   D    SE++             + +R  
Sbjct: 421 EVPGSLVDMPLADLWTDPCIAFAIQTLTGIPCDNPKISELNSSKGPGILATPEVHAERKV 480

Query: 481 AAFTSNESRSLGPNEKLPSSELPVNRVGVVE-------KLESTLELPVGEILADPCIEFA 501
               S E +  G +  L    +P    G VE       K  S+L+ P+ +I ADPCIEFA
Sbjct: 481 NGNGSVERQGCGMDLPLADPAIPKEHAGKVEMGHKTDDKPGSSLDTPLADIWADPCIEFA 540

[Close]

BLAST of CmaCh18G012410 vs. TrEMBL
Match: A0A061G828_THECC (Methyl-CPG-binding domain protein 13, putative isoform 1 OS=Theobroma cacao GN=TCM_015148 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.6e-56
Identity = 193/603 (32.01%), Postives = 296/603 (49.09%), Query Frame = 1


Query: 1   MMNQKSEEWLPPGWTVKVKVRKSGKKDKY----YYEPSSQMKFNSRAEVFRYLKTAAICY 60
           M +Q +++WLPPGW V+V+ R++GKKDK     YY P  +++F SRAEV RYL     C 
Sbjct: 1   MEDQTTDDWLPPGWKVEVRQRRNGKKDKLRVMCYYAPCGELRFISRAEVSRYLDKCG-CK 60

Query: 61  PESEESRTFKQSQNNVEVKKTLAEGLPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRS 120
            E +E+ + KQS  NV V+K  AEGLPPGWI+EIR TK A+R+R+D FY DPV+G VFRS
Sbjct: 61  TEEKENGSGKQSSKNVTVEKAAAEGLPPGWIKEIRITKRAHRVRKDPFYTDPVSGYVFRS 120

Query: 121 IREVHRYLTSGTVSRLVYKSRDQRGVDVEFQHDDISSPA-VPKKEMQAIG---KARRQII 180
           +++  RY+ +G + +L +K +D+   D + + D+I  PA V ++++   G   +  RQ  
Sbjct: 121 MKDALRYVETGELGKLAFKPKDKGSNDEDLEEDNICEPAHVERQKIDVNGITDETERQSA 180

Query: 181 WNENLLEPHEITNNEAIFPNATSVRESIPHSEPDSSH-GEIGSDVLCSTLPEQSDRKN-- 240
             E +     IT  E +  +A++  ++       + H   +G+++    L E    +   
Sbjct: 181 --EQVSNLSGITKEEEMLASASTGEQTSLSKHATNQHKAGVGAELSSLKLSEAKGSEQIG 240

Query: 241 --DFSELV-------------TTPSDGPTKNESKKRQR---KTK---DMNLTRRASKRLA 300
             D  E V              +  +G  K+E++K Q+   KTK     N+ RRASKRLA
Sbjct: 241 GKDSEEGVHASGNVVGVLLDKQSSENGMIKDETEKTQQGRGKTKLKKAFNIPRRASKRLA 300

Query: 301 GLQAEPVLEVKTGRRARPGACEEFDKKAVSSTTKSVSQCL-------ENPDVKHETKG-- 360
           G+  +P  E+KT R  R    +  +    ++ + S  +C+       + P+   ET    
Sbjct: 301 GVALDPTPELKTARARRSSFKQLSEVIPDAAESSSPGRCIHGASKQPDQPESALETSCDL 360

Query: 361 --------IIDPTK---------------SINTNTDSSR------------------KDD 420
                   I+ P                 ++ T  D+                    + D
Sbjct: 361 DSPKSKELILAPNNMLSSGEMLTMNGHVGNLETEADADNGVLPLGNAAIPGVHSGKVESD 420

Query: 421 VKQ----GSILKLPVEDLLADPCIAFAVKTLTGEVFDASISSEVSLIPN---------NI 480
           VK     GS++ +P+ DL  DPCIAFA++TLTG   D    SE++             + 
Sbjct: 421 VKASEVPGSLVDMPLADLWTDPCIAFAIQTLTGIPCDNPKISELNSSKGPGILATPEVHA 480

Query: 481 DRPSAAFTSNESRSLGPNEKLPSSELPVNRVGVVE-------KLESTLELPVGEILADPC 501
           +R      S E +  G +  L    +P    G VE       K  S+L+ P+ +I ADPC
Sbjct: 481 ERKVNGNGSVERQGCGMDLPLADPAIPKEHAGKVEMGHKTDDKPGSSLDTPLADIWADPC 540

[Close]

BLAST of CmaCh18G012410 vs. TrEMBL
Match: V7C2B4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G117900g PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 8.9e-52
Identity = 180/559 (32.20%), Postives = 263/559 (47.05%), Query Frame = 1


Query: 1   MMNQKSEEWLPPGWTVKVKVRKSGKKDKYYYEPSSQMKFNSRAEVFRYLKTAAICYPESE 60
           M    S++ LPPGWTV+VKVRK+GK+DKYY+ PSS +KFNS+ EV+RYL  A        
Sbjct: 1   MEKLNSDDQLPPGWTVEVKVRKNGKRDKYYFLPSSGLKFNSKVEVYRYLDNA-------N 60

Query: 61  ESRTFKQSQNNVEVKKTLAEGLPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREV 120
              + ++   NV V+K +AEGLPPGW+++ R     + +RRD++YIDPV+G  F SI +V
Sbjct: 61  NKVSIQKISPNVVVEKAIAEGLPPGWVKKTRIATKGDTVRRDTYYIDPVSGYAFHSIEDV 120

Query: 121 HRYLTSGTVSRLVYKSRDQRGVDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNENLLEP 180
             YL SG V R   K +D+   D + + D   S  V  K   +I   +   +        
Sbjct: 121 DHYLESGEVGRNTLKPKDEDISDTKLKDDKSPSACVTMKPTSSISMGQSSDL-------- 180

Query: 181 HEITNNEAIFPNATSVRESIPHSEPDS----SHGEIGSDVLCSTL--PEQSDRKN---DF 240
            ++  N    P + S  E +    PDS    +HG +G+++  S L   E SD+K     F
Sbjct: 181 -DMVANYQQIPRSASSGEYMHVPVPDSKFIFNHGVVGTELSSSVLSRDENSDQKQVKVGF 240

Query: 241 SELVTT-------------PSDGPTKNESKK--------RQRKTKDMNLTRRASKRLAGL 300
           +E  +                   TK  ++K        + +  K++NL RR SKRLAG+
Sbjct: 241 AESASVSGCTIKHTQEKQLQESSETKQGTEKVQAQHHQCKNKHKKEINLPRRCSKRLAGI 300

Query: 301 QAEPVLEVKTGRRARPGACE---EFDKKAVSSTTKSVSQCLENPDVKHETKGIID---PT 360
           + +PV E+KT  R R  A +   E DK + S       Q L     +  T   +    P 
Sbjct: 301 KLDPVPELKTRNRTRRVAVKKSAEVDKSSDSLHDGLAKQKLSGNYKEGFTFSHVQNNAPV 360

Query: 361 KSINTNTDSSRKDDVKQGSILKLPVEDLLADPCIAFAVKTLTGEVFDASISSEVSLIPNN 420
           +     T++      K    L  P+ +LL DPCIAFA++TLTG  F+ S +S+ S    +
Sbjct: 361 EECMRVTETGDNVVAKLDYNLDFPLRELLTDPCIAFAIQTLTGLTFETSKNSQTSSELKD 420

Query: 421 IDRPSAAFTSN-ESRSLGPNEKL---------------------PSSELPVNRVGVVEKL 480
           I     + T+  E +    N+ L                       S++           
Sbjct: 421 IQHSETSATAGCEGKGKKSNDGLSDNVFSSPGSLATSQEHASDAAKSDMKTKNENASPSS 480

Query: 481 ESTLELPVGEILADPCIEFAIKTLTGEIPLDDSPDIEDYF-HQLSTSKTQGSS---SNAL 496
           E TL++       DPCIEFAIKTLT  IPLD   + ++    QLS+S  Q S    SN  
Sbjct: 481 EKTLDMS----WMDPCIEFAIKTLTDSIPLDSDQNPKNCLQQQLSSSSNQHSEMTMSNVS 539

[Close]

BLAST of CmaCh18G012410 vs. TrEMBL
Match: A0A0L9VIJ9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g078700 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.4e-51
Identity = 171/570 (30.00%), Postives = 269/570 (47.19%), Query Frame = 1


Query: 1   MMNQKSEEWLPPGWTVKVKVRKSGKKDKYYYEPSSQMKFNSRAEVFRYLKTAAICYPESE 60
           M    S++ LPPGWTV+V+VRK+G++DKYY  PSS +KF S+ EVFR++  A+     + 
Sbjct: 1   MEKTDSDDRLPPGWTVEVRVRKNGRRDKYYILPSSGLKFKSKVEVFRHIDNASN-KDNAS 60

Query: 61  ESRTFKQSQNNVEVKKTLAEGLPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREV 120
              + ++   NV V+K +AEGLPPGW+++ R     +++RRD++YIDPV+G  F SI + 
Sbjct: 61  NKVSIQRISPNVVVEKAIAEGLPPGWVKKTRIATKGDKVRRDTYYIDPVSGYTFHSIEDA 120

Query: 121 HRYLTSGTVSRLVYKSRDQRGVDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNENLLEP 180
           + YL SG + R  +K +D+   D   + D   S  V  K   ++  A+   +        
Sbjct: 121 YHYLESGEMGRNTFKPKDEDNNDTNLKDDKSPSACVTMKPTLSVSMAQSSTL-------- 180

Query: 181 HEITNNEAIFPNATSVRESIPHSEPDS--SHGEIGSDVLCSTLPEQSDRKNDFSELVTTP 240
            +++N + I P + S  E +  S+ +   +HG    D     L E ++ K    ++    
Sbjct: 181 DKVSNYQQI-PRSASSGEHMHMSDSNCIFNHGCTNKDTQEKKLQENTETKQGTEKVQA-- 240

Query: 241 SDGPTKNESKKRQRKTKDMNLTRRASKRLAGLQAEPVLEVKT---GRRARPGACEE---- 300
                    K R +  K +NL RR+SKRLAG++ +PV E+KT    RRAR  A ++    
Sbjct: 241 ------QHHKCRNKHKKQINLPRRSSKRLAGIKLDPVPELKTRNRARRARQAAVKQSSEE 300

Query: 301 -----FDKKAVSSTTKSVSQCLENPDVKHETKGIIDPTKSIN---TNTDSSRKDDVKQGS 360
                 DK   S       Q L   D +  T   ++   ++      T++  K D K   
Sbjct: 301 ETITYVDKSPSSLHDDLAKQQLSGKDKECFTFSPLENNATVEECMRVTENGDKVDTKLDY 360

Query: 361 ILKLPVEDLLADPCIAFAVKTLTGEVFDASISSEVSLIPNNIDRPSAAFTS--------- 420
            L  P+++LL DPCIAFA++TLTG  F+ S +S+ S    +I     +  S         
Sbjct: 361 NLGFPLKELLTDPCIAFAIQTLTGLTFETSKNSQTSCELKDIQHSENSAVSGCEGQGKKC 420

Query: 421 ---------NESRSLGPNEKLPSSELPVNRVGVVEKLESTLELPVGEILADPCIEFAIKT 480
                    +   SL  +++       ++     E    + E  +     DPCIEFAIKT
Sbjct: 421 NDGLGDSVFSSPGSLATSQEHAGDAAKIDMKAKNENTSPSSEKTLDMSWMDPCIEFAIKT 480

Query: 481 LTGEIPLDDSPDIEDYFHQLSTSKTQGSSSNALNCFGSDHFYKMNVQSQKRQVIQ----- 523
           LT  IPLD   + ++      T KT  S+ +  N + +D++      SQK    Q     
Sbjct: 481 LTDSIPLDSDQNPKNC--NQHTEKTM-SNVSLNNPYQTDYYCSQYFGSQKPMFTQSFVDP 540

[Close]

BLAST of CmaCh18G012410 vs. TAIR10
Match: AT5G52230.1 (AT5G52230.1 methyl-CPG-binding domain protein 13)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-09
Identity = 57/166 (34.34%), Postives = 72/166 (43.37%), Query Frame = 1


Query: 318 KGIIDPTKSINTNTDSSRKDDVKQGSILKLPVEDLLADPCIAFAVKTLTGEVFDASISSE 377
           +G        +TN+ SS  D           + DL  DPCIAFA+KTLTGE      +  
Sbjct: 580 RGTCSEVMEKSTNSFSSAFDST---------LADLCKDPCIAFAIKTLTGESLCLLNTPA 639

Query: 378 VSLIPNNIDRPSAAFTSNESRSLGPNEKLPSSELPVNRVGVVEKLESTLELPVGEILADP 437
           +S  P N        T  +  S  P       E P N     EKL      P   I  DP
Sbjct: 640 ISSNPIN------NHTKQKGVSFTP-------ETPGNVNTCSEKLVFPSPPPGANIWQDP 699

Query: 438 CIEFAIKTLTGEIPLD-DSPDIEDYFHQL--STSKTQGSSSNALNC 481
           CI+FAIKTLTG IP+  D PD +     +  +T+ TQ +     NC
Sbjct: 700 CIDFAIKTLTGAIPIGLDEPDTKSKSQGMTSTTAATQEAKGRQNNC 723

[Close]

BLAST of CmaCh18G012410 vs. TAIR10
Match: AT5G59380.1 (AT5G59380.1 methyl-CPG-binding domain 6)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-08
Identity = 41/130 (31.54%), Postives = 53/130 (40.77%), Query Frame = 1


Query: 7   EEWLPPGWTVKVKVRKSGKK----DKYYYEPSSQMKFNSRAEVFRYLKTAAICYPESEES 66
           + WLPPGW V+ K+R SG      DKYYYEP++  KF SR EV  YL+         +  
Sbjct: 78  DNWLPPGWRVEDKIRTSGATAGSVDKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAE 137

Query: 67  RTF-------KQSQNNVEVKKTLAEGLPP-----------------------GWIREIRE 103
            T+        Q  N V    T+    PP                       GWI  I +
Sbjct: 138 NTYFNPDHFEGQGSNRVTRTATVPPPPPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGD 197

[Close]

BLAST of CmaCh18G012410 vs. TAIR10
Match: AT5G59800.1 (AT5G59800.1 methyl-CPG-binding domain 7)

HSP 1 Score: 57.0 bits (136), Expect = 4.1e-08
Identity = 41/120 (34.17%), Postives = 62/120 (51.67%), Query Frame = 1


Query: 10  LPPGWTVK-VKVRKSGKKDKYYYEPSSQMKFNSRAEVFRYLKTAAICYPESEESRTFKQS 69
           LP GW+V+ V  + S   DKYY E  +  +F S   V RYL+         E   + +Q 
Sbjct: 116 LPRGWSVEEVPRKNSHYIDKYYVERKTGKRFRSLVSVERYLR---------ESRNSIEQQ 175

Query: 70  QNNVEVKKTLAEG--LPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREVHRYLTS 127
              ++ ++  ++   LP GWI E +  ++++ I  D  YI+P  GN FRS+  V RYL S
Sbjct: 176 LRVLQNRRGHSKDFRLPDGWIVEEKPRRSSSHI--DRSYIEPGTGNKFRSMAAVERYLIS 224

[Close]

BLAST of CmaCh18G012410 vs. TAIR10
Match: AT3G46580.1 (AT3G46580.1 methyl-CPG-binding domain protein 5)

HSP 1 Score: 50.1 bits (118), Expect = 5.0e-06
Identity = 26/71 (36.62%), Postives = 40/71 (56.34%), Query Frame = 1


Query: 7  EEWLPPGWTVKVKVRKSGKK----DKYYYEPSSQMKFNSRAEVFRYLKTAAICYPESEES 66
          + WLPP W  +++VR SG K    DK+YYEP +  KF S+ EV  YL+      P+ +  
Sbjct: 32 DNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYLEHGT---PKKKSV 91

Query: 67 RTFKQSQNNVE 74
          +T +   ++ E
Sbjct: 92 KTAENGDSHSE 99

[Close]

BLAST of CmaCh18G012410 vs. NCBI nr
Match: gi|778679537|ref|XP_011651143.1| (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis sativus])

HSP 1 Score: 454.5 bits (1168), Expect = 2.5e-124
Identity = 262/467 (56.10%), Postives = 314/467 (67.24%), Query Frame = 1


Query: 1   MMNQKSEEWLPPGWTVKVKVRKSGKKDKYYYEPSSQMKFNSRAEVFRYLKTAAICYPESE 60
           MMNQ S++ LPPGWTVKVKVRKSGKKDKYY+EPSSQM+FNSRAEVFRYLKTAAIC+PESE
Sbjct: 1   MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE 60

Query: 61  ESRTFKQSQNNVEVKKTLAEGLPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREV 120
           ESRT K+  NNVEVKKT+A+ LP GWI EIRETKTANRIRRDS YIDPVNGN  RSIR+V
Sbjct: 61  ESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDPVNGNALRSIRDV 120

Query: 121 HRYLTSGTVSRLVYKSRDQRGVDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNENLLEP 180
           HRYLTSG VSRL +KSR+QR  ++EFQHD+ISSP V KKE+  IGKARRQIIW+EN  EP
Sbjct: 121 HRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEP 180

Query: 181 HEITNNEAIFPNATSVRESIPHSEPDSSHGEIGSDVLCSTLPE-----QSDRKNDFSELV 240
            E+ + EA+FPNA SV E++    PD S G I +   CST  +     QSD KND SE+V
Sbjct: 181 SEMVDGEAMFPNA-SVGETVLFPIPDPSLGGISAKPHCSTPTDAKGLKQSDGKNDISEIV 240

Query: 241 TTPSD----------GPTKNESKKRQRKTKDMNLTRRASKRLAGLQAEPVLEVKTGRRAR 300
            TP +          G TK ES+KRQRKT D+NL RRASKRLAGLQAEPVL+VKTGRRAR
Sbjct: 241 LTPKEFIQHKCPIENGATKGESRKRQRKTNDINLPRRASKRLAGLQAEPVLQVKTGRRAR 300

Query: 301 PGACEEFDKKAVSSTTKSVSQCLENPDVKHETKGIIDPTKSINTNTDSSRKDDVKQGSIL 360
             ACEE DK+  S+T     QC ENPDVKH+T    DP+K INT+ DS  K         
Sbjct: 301 SVACEESDKQVASTTKLVAFQCPENPDVKHKTNSTADPSK-INTSPDSGGK--------- 360

Query: 361 KLPVEDLLADPCI--AFAVKTLTGEVFDASISSEVSLIPNNIDRPSAAFTSNESRSLGPN 420
                   A  C+  +  +K  + + ++     E SL P ++          E ++    
Sbjct: 361 --------AHICVDLSIVMKMKSADAYEQQPKPESSLPPEDVLEKHVGMVEIEDKA---- 420

Query: 421 EKLPSSELPVNRVGVVEKLESTLELPVGEILADPCIEFAIKTLTGEI 451
                          V+K    L+LP+ ++L DPCI FA+KTLTG++
Sbjct: 421 --------------NVKKQGPLLKLPMEDLLTDPCIAFAVKTLTGDV 430

[Close]

BLAST of CmaCh18G012410 vs. NCBI nr
Match: gi|778679540|ref|XP_011651144.1| (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucumis sativus])

HSP 1 Score: 390.2 bits (1001), Expect = 5.8e-105
Identity = 231/431 (53.60%), Postives = 280/431 (64.97%), Query Frame = 1


Query: 37  MKFNSRAEVFRYLKTAAICYPESEESRTFKQSQNNVEVKKTLAEGLPPGWIREIRETKTA 96
           M+FNSRAEVFRYLKTAAIC+PESEESRT K+  NNVEVKKT+A+ LP GWI EIRETKTA
Sbjct: 1   MRFNSRAEVFRYLKTAAICHPESEESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTA 60

Query: 97  NRIRRDSFYIDPVNGNVFRSIREVHRYLTSGTVSRLVYKSRDQRGVDVEFQHDDISSPAV 156
           NRIRRDS YIDPVNGN  RSIR+VHRYLTSG VSRL +KSR+QR  ++EFQHD+ISSP V
Sbjct: 61  NRIRRDSSYIDPVNGNALRSIRDVHRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVV 120

Query: 157 PKKEMQAIGKARRQIIWNENLLEPHEITNNEAIFPNATSVRESIPHSEPDSSHGEIGSDV 216
            KKE+  IGKARRQIIW+EN  EP E+ + EA+FPNA SV E++    PD S G I +  
Sbjct: 121 SKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFPNA-SVGETVLFPIPDPSLGGISAKP 180

Query: 217 LCSTLPE-----QSDRKNDFSELVTTPSD----------GPTKNESKKRQRKTKDMNLTR 276
            CST  +     QSD KND SE+V TP +          G TK ES+KRQRKT D+NL R
Sbjct: 181 HCSTPTDAKGLKQSDGKNDISEIVLTPKEFIQHKCPIENGATKGESRKRQRKTNDINLPR 240

Query: 277 RASKRLAGLQAEPVLEVKTGRRARPGACEEFDKKAVSSTTKSVSQCLENPDVKHETKGII 336
           RASKRLAGLQAEPVL+VKTGRRAR  ACEE DK+  S+T     QC ENPDVKH+T    
Sbjct: 241 RASKRLAGLQAEPVLQVKTGRRARSVACEESDKQVASTTKLVAFQCPENPDVKHKTNSTA 300

Query: 337 DPTKSINTNTDSSRKDDVKQGSILKLPVEDLLADPCI--AFAVKTLTGEVFDASISSEVS 396
           DP+K INT+ DS  K                 A  C+  +  +K  + + ++     E S
Sbjct: 301 DPSK-INTSPDSGGK-----------------AHICVDLSIVMKMKSADAYEQQPKPESS 360

Query: 397 LIPNNIDRPSAAFTSNESRSLGPNEKLPSSELPVNRVGVVEKLESTLELPVGEILADPCI 451
           L P ++          E ++                   V+K    L+LP+ ++L DPCI
Sbjct: 361 LPPEDVLEKHVGMVEIEDKA------------------NVKKQGPLLKLPMEDLLTDPCI 394

[Close]

BLAST of CmaCh18G012410 vs. NCBI nr
Match: gi|778679543|ref|XP_011651145.1| (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X3 [Cucumis sativus])

HSP 1 Score: 334.0 bits (855), Expect = 5.0e-88
Identity = 202/399 (50.63%), Postives = 250/399 (62.66%), Query Frame = 1


Query: 69  QNNVEVKKTLAEGLPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREVHRYLTSGT 128
           ++ VEVKKT+A+ LP GWI EIRETKTANRIRRDS YIDPVNGN  RSIR+VHRYLTSG 
Sbjct: 26  KDKVEVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDPVNGNALRSIRDVHRYLTSGK 85

Query: 129 VSRLVYKSRDQRGVDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNENLLEPHEITNNEA 188
           VSRL +KSR+QR  ++EFQHD+ISSP V KKE+  IGKARRQIIW+EN  EP E+ + EA
Sbjct: 86  VSRLTHKSRNQRDNNIEFQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEPSEMVDGEA 145

Query: 189 IFPNATSVRESIPHSEPDSSHGEIGSDVLCSTLPE-----QSDRKNDFSELVTTPSD--- 248
           +FPNA SV E++    PD S G I +   CST  +     QSD KND SE+V TP +   
Sbjct: 146 MFPNA-SVGETVLFPIPDPSLGGISAKPHCSTPTDAKGLKQSDGKNDISEIVLTPKEFIQ 205

Query: 249 -------GPTKNESKKRQRKTKDMNLTRRASKRLAGLQAEPVLEVKTGRRARPGACEEFD 308
                  G TK ES+KRQRKT D+NL RRASKRLAGLQAEPVL+VKTGRRAR  ACEE D
Sbjct: 206 HKCPIENGATKGESRKRQRKTNDINLPRRASKRLAGLQAEPVLQVKTGRRARSVACEESD 265

Query: 309 KKAVSSTTKSVSQCLENPDVKHETKGIIDPTKSINTNTDSSRKDDVKQGSILKLPVEDLL 368
           K+  S+T     QC ENPDVKH+T    DP+K INT+ DS  K                 
Sbjct: 266 KQVASTTKLVAFQCPENPDVKHKTNSTADPSK-INTSPDSGGK----------------- 325

Query: 369 ADPCI--AFAVKTLTGEVFDASISSEVSLIPNNIDRPSAAFTSNESRSLGPNEKLPSSEL 428
           A  C+  +  +K  + + ++     E SL P ++          E ++            
Sbjct: 326 AHICVDLSIVMKMKSADAYEQQPKPESSLPPEDVLEKHVGMVEIEDKA------------ 385

Query: 429 PVNRVGVVEKLESTLELPVGEILADPCIEFAIKTLTGEI 451
                  V+K    L+LP+ ++L DPCI FA+KTLTG++
Sbjct: 386 ------NVKKQGPLLKLPMEDLLTDPCIAFAVKTLTGDV 387

[Close]

BLAST of CmaCh18G012410 vs. NCBI nr
Match: gi|449446179|ref|XP_004140849.1| (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X4 [Cucumis sativus])

HSP 1 Score: 294.7 bits (753), Expect = 3.3e-76
Identity = 182/386 (47.15%), Postives = 232/386 (60.10%), Query Frame = 1


Query: 82  LPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREVHRYLTSGTVSRLVYKSRDQRG 141
           LPPGW  +++  K+    ++D  YIDPVNGN  RSIR+VHRYLTSG VSRL +KSR+QR 
Sbjct: 10  LPPGWTVKVKVRKSG---KKDKSYIDPVNGNALRSIRDVHRYLTSGKVSRLTHKSRNQRD 69

Query: 142 VDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNENLLEPHEITNNEAIFPNATSVRESIP 201
            ++EFQHD+ISSP V KKE+  IGKARRQIIW+EN  EP E+ + EA+FPNA SV E++ 
Sbjct: 70  NNIEFQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFPNA-SVGETVL 129

Query: 202 HSEPDSSHGEIGSDVLCSTLPE-----QSDRKNDFSELVTTPSD----------GPTKNE 261
              PD S G I +   CST  +     QSD KND SE+V TP +          G TK E
Sbjct: 130 FPIPDPSLGGISAKPHCSTPTDAKGLKQSDGKNDISEIVLTPKEFIQHKCPIENGATKGE 189

Query: 262 SKKRQRKTKDMNLTRRASKRLAGLQAEPVLEVKTGRRARPGACEEFDKKAVSSTTKSVSQ 321
           S+KRQRKT D+NL RRASKRLAGLQAEPVL+VKTGRRAR  ACEE DK+  S+T     Q
Sbjct: 190 SRKRQRKTNDINLPRRASKRLAGLQAEPVLQVKTGRRARSVACEESDKQVASTTKLVAFQ 249

Query: 322 CLENPDVKHETKGIIDPTKSINTNTDSSRKDDVKQGSILKLPVEDLLADPCI--AFAVKT 381
           C ENPDVKH+T    DP+K INT+ DS  K                 A  C+  +  +K 
Sbjct: 250 CPENPDVKHKTNSTADPSK-INTSPDSGGK-----------------AHICVDLSIVMKM 309

Query: 382 LTGEVFDASISSEVSLIPNNIDRPSAAFTSNESRSLGPNEKLPSSELPVNRVGVVEKLES 441
            + + ++     E SL P ++          E ++                   V+K   
Sbjct: 310 KSADAYEQQPKPESSLPPEDVLEKHVGMVEIEDKA------------------NVKKQGP 355

Query: 442 TLELPVGEILADPCIEFAIKTLTGEI 451
            L+LP+ ++L DPCI FA+KTLTG++
Sbjct: 370 LLKLPMEDLLTDPCIAFAVKTLTGDV 355

[Close]

BLAST of CmaCh18G012410 vs. NCBI nr
Match: gi|645256823|ref|XP_008234128.1| (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X1 [Prunus mume])

HSP 1 Score: 262.7 bits (670), Expect = 1.4e-66
Identity = 201/555 (36.22%), Postives = 289/555 (52.07%), Query Frame = 1


Query: 1   MMNQKSEEWLPPGWTVKVKVRKSGKKDKYYYEPSSQMKFNSRAEVFRYLKTAAICYPESE 60
           M +QKSE+WLP GWTV+VKVR +GK+DKYYY+ +S  KFNS+AEV RYL T+ I     +
Sbjct: 1   MTDQKSEDWLPTGWTVEVKVRNNGKRDKYYYDSASGHKFNSKAEVSRYLNTSQISDEVKQ 60

Query: 61  E-SRTFKQSQNNVEVKKTLAEGLPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIRE 120
           +   T K+S N+V V+KT+A GLP GWI+EIR TK  ++IRRDS+YIDPV+  +FRS+++
Sbjct: 61  KVEETLKRSANDVVVEKTIAGGLPQGWIKEIRMTKKDHKIRRDSYYIDPVSEKLFRSMKD 120

Query: 121 VHRYLTSGTVSRLVYKSRDQRGVDVEFQHDDISSPAVPK--KEMQAIGKARRQIIWNENL 180
           V+RYL +    RL+ +     G   E + +  SS  + +  K+ Q +  A +        
Sbjct: 121 VNRYLENEKPRRLILEP--SHGSHKELEDEKASSSHLNEIMKDGQILNLACK-------- 180

Query: 181 LEPHEITNNEAIFPNATSVRESIPHSEPDSSHGEIGSDVLCSTLPEQSDRKNDFSELVTT 240
                       FP  TS +     +E D+  G +       +  ++ D  +  SE ++ 
Sbjct: 181 -------GESPTFPAQTSYQ-----TEVDTESGSLNPTESKGSEQKEQDGDSYKSEFISV 240

Query: 241 PS-----------DGPTKNESKKRQ------RKTKDMNLTRRASKRLAGLQAEPVLEVKT 300
           P+            G  K+ESKK Q      +K K++NL RRASKRLAG++ +PV E+KT
Sbjct: 241 PAGFGLADKQCLESGLFKHESKKTQLSLGKSKKKKELNLPRRASKRLAGVEVDPVPELKT 300

Query: 301 GRRARPGACEEFDKKAVSSTTKSVSQCLENPDVKHETKGIIDPTKSI-NTNT-------- 360
             RAR    ++  +    +T  S S        +      ++P K + N  T        
Sbjct: 301 STRARRVTIKQSGEGVHGTTEGSSSGNSTGSVFRQPGCPEVEPEKHVQNVETVISGDEKQ 360

Query: 361 --------------DSSRKDDVKQGSILKLPVEDLLADPCIAFAVKTLTGEVFDASISSE 420
                         +++ K + K G    LP+ D L DPCIAFA++TLTG  FD S S  
Sbjct: 361 RCASVFPEEHAGKLETTDKAEEKPGLQPDLPLGDFLTDPCIAFAIETLTGIAFDNSRS-- 420

Query: 421 VSLIPNNIDRPSAAFTSNESRSLGPNEKLPSSELPV------------NRVGVVEKLE-- 480
                 N ++ S    + + RS    E    S++ +             +VG  +K E  
Sbjct: 421 ------NSEQSSGDLATPKDRSGNKEEDNKRSDVVLAHGNLFIPEQHGGKVGKDDKAEQK 480

Query: 481 --STLELPVGEILADPCIEFAIKTLTGEIPLDDSPDIEDYF-HQLSTSKTQGSSSNALNC 496
             S +ELP G +  DPCIEFAIKTLTG IPLD  P IE+YF  QLS+S+TQG+S   L  
Sbjct: 481 SGSPVELPFGGLWPDPCIEFAIKTLTGAIPLDYDPHIEEYFRQQLSSSRTQGNSDLTLKN 525

The following BLAST results are available for this feature:

BLAST of CmaCh18G012410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MBD13_ARATH	2.3e-08	34.34	Methyl-CpG-binding domain-containing protein 13 OS=Arabidopsis thaliana GN=MBD13...	[more]
MBD6_ARATH	1.9e-07	31.54	Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana GN=MBD6 P...	[more]
MBD7_ARATH	7.3e-07	34.17	Methyl-CpG-binding domain-containing protein 7 OS=Arabidopsis thaliana GN=MBD7 P...	[more]

BLAST of CmaCh18G012410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6H4_CUCSA	4.1e-105	53.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G181990 PE=4 SV=1	[more]
A0A061G045_THECC	3.7e-58	32.22	Methyl-CPG-binding domain protein 13, putative isoform 2 OS=Theobroma cacao GN=T...	[more]
A0A061G828_THECC	1.6e-56	32.01	Methyl-CPG-binding domain protein 13, putative isoform 1 OS=Theobroma cacao GN=T...	[more]
V7C2B4_PHAVU	8.9e-52	32.20	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G117900g PE=4 SV=1	[more]
A0A0L9VIJ9_PHAAN	3.4e-51	30.00	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g078700 PE=4 SV=1	[more]

BLAST of CmaCh18G012410 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52230.1	1.3e-09	34.34	methyl-CPG-binding domain protein 13	[more]
AT5G59380.1	1.1e-08	31.54	methyl-CPG-binding domain 6	[more]
AT5G59800.1	4.1e-08	34.17	methyl-CPG-binding domain 7	[more]
AT3G46580.1	5.0e-06	36.62	methyl-CPG-binding domain protein 5	[more]

BLAST of CmaCh18G012410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778679537\|ref\|XP_011651143.1\|	2.5e-124	56.10	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis s...	[more]
gi\|778679540\|ref\|XP_011651144.1\|	5.8e-105	53.60	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucumis s...	[more]
gi\|778679543\|ref\|XP_011651145.1\|	5.0e-88	50.63	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X3 [Cucumis s...	[more]
gi\|449446179\|ref\|XP_004140849.1\|	3.3e-76	47.15	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X4 [Cucumis s...	[more]
gi\|645256823\|ref\|XP_008234128.1\|	1.4e-66	36.22	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X1 [Prunus mu...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001739	Methyl_CpG_DNA-bd
IPR016177	DNA-bd_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006298	mismatch repair
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030983	mismatched DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G012410.1	CmaCh18G012410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001739	Methyl-CpG DNA binding	GENE3D	G3DSA:3.30.890.10		coord: 64..126 score: 5.0E-11coord: 8..52 score: 1.9
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 80..128 score: 6.1E-8coord: 6..53 score: 3.
IPR001739	Methyl-CpG DNA binding	PROFILE	PS50982	MBD	coord: 72..151 score: 15.39coord: 1..70 score: 14
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 7..54 score: 1.47E-12coord: 74..127 score: 4.25
None	No IPR available	PANTHER	PTHR34067	FAMILY NOT NAMED	coord: 1..288 score: 3.7E-54coord: 333..459 score: 3.7
None	No IPR available	PANTHER	PTHR34067:SF1	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 13	coord: 1..288 score: 3.7E-54coord: 333..459 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh18G012410	Cucsa.107660	Cucumber (Gy14) v1	cgycmaB0249
CmaCh18G012410	Cla006190	Watermelon (97103) v1	cmawmB373
CmaCh18G012410	Csa3G181990	Cucumber (Chinese Long) v2	cmacuB408
CmaCh18G012410	Csa5G154900	Cucumber (Chinese Long) v2	cmacuB420
CmaCh18G012410	MELO3C006897	Melon (DHL92) v3.5.1	cmameB375
CmaCh18G012410	ClCG05G007960	Watermelon (Charleston Gray)	cmawcgB365
CmaCh18G012410	ClCG01G002970	Watermelon (Charleston Gray)	cmawcgB352
CmaCh18G012410	CSPI03G16830	Wild cucumber (PI 183967)	cmacpiB413
CmaCh18G012410	CmoCh16G001360	Cucurbita moschata (Rifu)	cmacmoB405
CmaCh18G012410	CmoCh18G012640	Cucurbita moschata (Rifu)	cmacmoB406
CmaCh18G012410	Lsi09G002880	Bottle gourd (USVL1VR-Ls)	cmalsiB365
CmaCh18G012410	Lsi05G012390	Bottle gourd (USVL1VR-Ls)	cmalsiB387
CmaCh18G012410	Cp4.1LG09g00820	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G012410	Cp4.1LG14g06090	Cucurbita pepo (Zucchini)	cmacpeB425
CmaCh18G012410	MELO3C006898.2	Melon (DHL92) v3.6.1	cmamedB432
CmaCh18G012410	MELO3C005647.2	Melon (DHL92) v3.6.1	cmamedB407
CmaCh18G012410	CsaV3_3G017000	Cucumber (Chinese Long) v3	cmacucB0487
CmaCh18G012410	CsaV3_5G003080	Cucumber (Chinese Long) v3	cmacucB0502
CmaCh18G012410	Cla97C05G089970	Watermelon (97103) v2	cmawmbB424
CmaCh18G012410	Cla97C01G003060	Watermelon (97103) v2	cmawmbB403
CmaCh18G012410	Bhi01G000972	Wax gourd	cmawgoB0507
CmaCh18G012410	CsGy5G002990	Cucumber (Gy14) v2	cgybcmaB630
CmaCh18G012410	CsGy3G016920	Cucumber (Gy14) v2	cgybcmaB352
CmaCh18G012410	Carg15137	Silver-seed gourd	carcmaB1368
CmaCh18G012410	Carg22094	Silver-seed gourd	carcmaB1032

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh18G012410	CmaCh16G001310	Cucurbita maxima (Rimu)	cmacmaB338

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G012410	Melon (DHL92) v3.6.1	cmamedB435
CmaCh18G012410	Silver-seed gourd	carcmaB0996
CmaCh18G012410	Watermelon (97103) v2	cmawmbB429
CmaCh18G012410	Wax gourd	cmawgoB0509
CmaCh18G012410	Cucurbita maxima (Rimu)	cmacmaB253
CmaCh18G012410	Cucurbita maxima (Rimu)	cmacmaB396
CmaCh18G012410	Cucurbita moschata (Rifu)	cmacmoB416
CmaCh18G012410	Cucurbita pepo (Zucchini)	cmacpeB453
CmaCh18G012410	Bottle gourd (USVL1VR-Ls)	cmalsiB386