MELO3C006897 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006897
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Methyl-CpG-binding domain-containing 13-like protein
Location	chr6 : 7067907 .. 7068626 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATGAAATCTGAGGATGCATATGAACAACAACCAAAACCTGAATCCTCTCTGCCTCCAGAGGACGTTCTGGAAAAGCACGTAGGCACGGTGGAAATTGAAGATAAGGCTGATATAAAAAAACAAGGCCCTCTTCTTAAACTGCCGATGGAGGACTTGTTGACTGATCCTTGCATTGCATTCGCAGTTAAAACGCTTACTGGGGGTGTTTTGGATGCATCCATAAGCTCGGCGGCATCACTTACGCCAAACTATGTTGATCCTTTCACTTCCTTTACTCCAAATGAGAGGAGAAACTCAGGACCAGAAAACAAGCTTAATGAGAAAGTGGCACGTCCAGAACTTCCTGTTACTCGAGTTGGGAAAGTCGAAAATAATGTTGTTGAGAAGCTAAAATCTACTCTGGAGTTGCCAGTTGGTGAAATATTTTCAGACCCTTGTATAGAATTTGCCATTAAAACTCTAACCGGTGAAATCCCACTTGACAACAATCCGGATATCGAGGATTACTTTCACCAATTTAGCACGTCGAAAACCGAAAAAACTAATGCAAATGCTTCAGATCAGCCTGGTTTGGATTATTTCTGCAAGACTAGTGTTAGCCAGAAGCAGCAGGCTATCCAAGCACTAGGTGCATCTCCTAAGATTAACTTCCAAACCTGTGGAACAGGTTTGCACCACCAAGAAAGGAACAGAAACGAGTTCCAAAGGCACTGA

mRNA sequence

ATGAAGATGAAATCTGAGGATGCATATGAACAACAACCAAAACCTGAATCCTCTCTGCCTCCAGAGGACGTTCTGGAAAAGCACGTAGGCACGGTGGAAATTGAAGATAAGGCTGATATAAAAAAACAAGGCCCTCTTCTTAAACTGCCGATGGAGGACTTGTTGACTGATCCTTGCATTGCATTCGCAGTTAAAACGCTTACTGGGGGTGTTTTGGATGCATCCATAAGCTCGGCGGCATCACTTACGCCAAACTATGTTGATCCTTTCACTTCCTTTACTCCAAATGAGAGGAGAAACTCAGGACCAGAAAACAAGCTTAATGAGAAAGTGGCACGTCCAGAACTTCCTGTTACTCGAGTTGGGAAAGTCGAAAATAATGTTGTTGAGAAGCTAAAATCTACTCTGGAGTTGCCAGTTGGTGAAATATTTTCAGACCCTTGTATAGAATTTGCCATTAAAACTCTAACCGGTGAAATCCCACTTGACAACAATCCGGATATCGAGGATTACTTTCACCAATTTAGCACGTCGAAAACCGAAAAAACTAATGCAAATGCTTCAGATCAGCCTGGTTTGGATTATTTCTGCAAGACTAGTGTTAGCCAGAAGCAGCAGGCTATCCAAGCACTAGGTGCATCTCCTAAGATTAACTTCCAAACCTGTGGAACAGGTTTGCACCACCAAGAAAGGAACAGAAACGAGTTCCAAAGGCACTGA

Coding sequence (CDS)

ATGAAGATGAAATCTGAGGATGCATATGAACAACAACCAAAACCTGAATCCTCTCTGCCTCCAGAGGACGTTCTGGAAAAGCACGTAGGCACGGTGGAAATTGAAGATAAGGCTGATATAAAAAAACAAGGCCCTCTTCTTAAACTGCCGATGGAGGACTTGTTGACTGATCCTTGCATTGCATTCGCAGTTAAAACGCTTACTGGGGGTGTTTTGGATGCATCCATAAGCTCGGCGGCATCACTTACGCCAAACTATGTTGATCCTTTCACTTCCTTTACTCCAAATGAGAGGAGAAACTCAGGACCAGAAAACAAGCTTAATGAGAAAGTGGCACGTCCAGAACTTCCTGTTACTCGAGTTGGGAAAGTCGAAAATAATGTTGTTGAGAAGCTAAAATCTACTCTGGAGTTGCCAGTTGGTGAAATATTTTCAGACCCTTGTATAGAATTTGCCATTAAAACTCTAACCGGTGAAATCCCACTTGACAACAATCCGGATATCGAGGATTACTTTCACCAATTTAGCACGTCGAAAACCGAAAAAACTAATGCAAATGCTTCAGATCAGCCTGGTTTGGATTATTTCTGCAAGACTAGTGTTAGCCAGAAGCAGCAGGCTATCCAAGCACTAGGTGCATCTCCTAAGATTAACTTCCAAACCTGTGGAACAGGTTTGCACCACCAAGAAAGGAACAGAAACGAGTTCCAAAGGCACTGA

Protein sequence

MKMKSEDAYEQQPKPESSLPPEDVLEKHVGTVEIEDKADIKKQGPLLKLPMEDLLTDPCIAFAVKTLTGGVLDASISSAASLTPNYVDPFTSFTPNERRNSGPENKLNEKVARPELPVTRVGKVENNVVEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNPDIEDYFHQFSTSKTEKTNANASDQPGLDYFCKTSVSQKQQAIQALGASPKINFQTCGTGLHHQERNRNEFQRH*

Homology

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BLAST of MELO3C006897 vs. Swiss-Prot
Match: MBD13_ARATH (Methyl-CpG-binding domain-containing protein 13 OS=Arabidopsis thaliana GN=MBD13 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-10
Identity = 56/157 (35.67%), Postives = 67/157 (42.68%), Query Frame = 1


Query: 51  MEDLLTDPCIAFAVKTLTGGVLDASISSAASLTP--NYV-DPFTSFTPNERRNSGPENKL 110
           + DL  DPCIAFA+KTLTG  L    + A S  P  N+      SFTP      G  N  
Sbjct: 602 LADLCKDPCIAFAIKTLTGESLCLLNTPAISSNPINNHTKQKGVSFTPE---TPGNVNTC 661

Query: 111 NEKVARPELPVTRVGKVENNVVEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLD-NNP 170
           +EK+  P  P                     P   I+ DPCI+FAIKTLTG IP+  + P
Sbjct: 662 SEKLVFPSPP---------------------PGANIWQDPCIDFAIKTLTGAIPIGLDEP 721

Query: 171 DIEDYFHQFSTSKTEKTNANASDQPGLDYFCKTSVSQ 204
           D +    Q  TS T  T      Q   DY    +V +
Sbjct: 722 DTKSK-SQGMTSTTAATQEAKGRQNNCDYMTNKTVGK 733

HSP 2 Score: 41.2 bits (95), Expect = 1.9e-02
Identity = 32/123 (26.02%), Postives = 48/123 (39.02%), Query Frame = 1


Query: 81  SLTPNYVDPFTSFTPNERRNSGPE---------NKLNEKVARPELPVTRVGKVENNVVEK 140
           S+ P  + P  S  PN+ +   P          NKL  + +   +      +V       
Sbjct: 536 SVKPTQISPLRS--PNKGKQPHPSDSGSAIQRRNKLANEYSNSSVVRGTCSEVMEKSTNS 595

Query: 141 LKSTLELPVGEIFSDPCIEFAIKTLTGE------IPLDNNPDIEDYFHQFSTSKTEKTNA 189
             S  +  + ++  DPCI FAIKTLTGE       P  ++  I ++  Q   S T +T  
Sbjct: 596 FSSAFDSTLADLCKDPCIAFAIKTLTGESLCLLNTPAISSNPINNHTKQKGVSFTPETPG 655

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BLAST of MELO3C006897 vs. TrEMBL
Match: A0A0A0L6H4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G181990 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 3.7e-122
Identity = 223/239 (93.31%), Postives = 228/239 (95.40%), Query Frame = 1


Query: 1   MKMKSEDAYEQQPKPESSLPPEDVLEKHVGTVEIEDKADIKKQGPLLKLPMEDLLTDPCI 60
           MKMKS DAYEQQPKPESSLPPEDVLEKHVG VEIEDKA++KKQGPLLKLPMEDLLTDPCI
Sbjct: 324 MKMKSADAYEQQPKPESSLPPEDVLEKHVGMVEIEDKANVKKQGPLLKLPMEDLLTDPCI 383

Query: 61  AFAVKTLTGGVLDASISSAASLTPNYVDPFTSFTPNERRNSGPENKLNEKVARPELPVTR 120
           AFAVKTLTG VLDASISS ASLTPN+VDPFT FTPNER NSGPENKLNEKVA PELPV R
Sbjct: 384 AFAVKTLTGDVLDASISSDASLTPNHVDPFTPFTPNERCNSGPENKLNEKVACPELPVAR 443

Query: 121 VGKVENNVVEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNPDIEDYFHQFSTSKT 180
           VGKVENN VEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNN DIEDYF+QFSTSKT
Sbjct: 444 VGKVENN-VEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNRDIEDYFYQFSTSKT 503

Query: 181 EKTNANASDQPGLDYFCKTSVSQKQQAIQALGASPKINFQTCGTGLHHQERNRNEFQRH 240
           EKTN NASDQPGLDYFCKT+VSQKQQAIQALGASPKINFQTCGTGLHHQERNRNEFQRH
Sbjct: 504 EKTNENASDQPGLDYFCKTNVSQKQQAIQALGASPKINFQTCGTGLHHQERNRNEFQRH 561

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BLAST of MELO3C006897 vs. TrEMBL
Match: M5XCT8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007049mg PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.4e-25
Identity = 80/187 (42.78%), Postives = 109/187 (58.29%), Query Frame = 1


Query: 26  EKHVGTVEIEDKADIKKQGPLLKLPMEDLLTDPCIAFAVKTLTGGVLDASISSAASLTPN 85
           E+H G +E  DKA+  K G    LP+ D LTDPCIAFA++TLTG   D S S++   + +
Sbjct: 183 EEHAGKLETTDKAE-GKPGLQPDLPLGDFLTDPCIAFAIETLTGIAFDNSRSNSEQSSGD 242

Query: 86  YVDPFTSFTPNERR-NSGPENKLNEKVARPE---LPVTRVGKV--ENNVVEKLKSTLELP 145
                   TP +R  N   +NK ++ V  P    +P    GKV  ++   +K  S +ELP
Sbjct: 243 LA------TPKDRSGNKEEDNKRSDVVLAPGNLFIPEQHGGKVGKDDKAEQKSGSPVELP 302

Query: 146 VGEIFSDPCIEFAIKTLTGEIPLDNNPDIEDYF-HQFSTSKTEKTNANASDQPGLDYFCK 205
            G ++ DPCIEFAIKTLTG IPLD +P IE+YF  Q S+S+T+  +       GLD FC+
Sbjct: 303 FGGLWPDPCIEFAIKTLTGAIPLDYDPHIEEYFQQQLSSSRTQGNSDLTLKNVGLDNFCQ 362

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BLAST of MELO3C006897 vs. TrEMBL
Match: M5XCT8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007049mg PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.9e-02
Identity = 28/72 (38.89%), Postives = 42/72 (58.33%), Query Frame = 1


Query: 2   KMKSEDAYEQQPKPESSLPPEDVL--EKHVGTVEIEDKADIKKQGPLLKLPMEDLLTDPC 61
           K +S +  E   + +  L P ++   E+H G V  +DKA+ +K G  ++LP   L  DPC
Sbjct: 246 KDRSGNKEEDNKRSDVVLAPGNLFIPEQHGGKVGKDDKAE-QKSGSPVELPFGGLWPDPC 305

Query: 62  IAFAVKTLTGGV 72
           I FA+KTLTG +
Sbjct: 306 IEFAIKTLTGAI 316

HSP 2 Score: 47.0 bits (110), Expect = 3.8e-02
Identity = 44/160 (27.50%), Postives = 71/160 (44.38%), Query Frame = 1


Query: 10  EQQPKPESSLPPEDVLEKHVGTVEIEDKADIKKQGPLLKLPMEDLLTDPCIAFAVKTLTG 69
           + + K E +LP      K +  VE++   ++K      ++ ++           V + T 
Sbjct: 85  KSKKKKELNLPRR--ASKRLAGVEVDPVPELKTSTRARRVTIKQS------GEGVHSTTE 144

Query: 70  GVLDASISSAASLTPNY--VDPFTSFTPNERRNSGPENKLNEKVARPELPVTRVGKVENN 129
           G    + + +    P Y  V+P       E  NSG E ++   V     P    GK+E  
Sbjct: 145 GSSSGNSTGSVFRQPGYPEVEPEKHVQNVETMNSGDEKQMCASV----FPEEHAGKLETT 204

Query: 130 VVEKLKSTLE--LPVGEIFSDPCIEFAIKTLTGEIPLDNN 166
              + K  L+  LP+G+  +DPCI FAI+TLTG I  DN+
Sbjct: 205 DKAEGKPGLQPDLPLGDFLTDPCIAFAIETLTG-IAFDNS 231

HSP 3 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 75/216 (34.72%), Postives = 109/216 (50.46%), Query Frame = 1


Query: 23  DVLEKHVGTVEIEDKADIKKQGPLLKLPMEDLLTDPCIAFAVKTLTGGVLDASISSAASL 82
           D+  KH   +E + +AD K   PL+ LP  DLL+DPCIAFA+KTLTG   + S     SL
Sbjct: 276 DLTMKHPDNIETDIEAD-KNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSL 335

Query: 83  TPNYVDP----FTSFTPNERRNSGPENKLNEKVARPELPVTRVGKVENNVVEKLKSTLEL 142
             N        F      ++R +  E K        E       K++ +  EKL++ L+L
Sbjct: 336 ESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANVESKLKTD--EKLENPLDL 395

Query: 143 PVGEIFSDPCIEFAIKTLTGEIPLDNNPDIEDYFHQFSTSKTEKTNANASDQPGLDYFCK 202
           P  +I+ DPCIEFAIKTLTG IP+ N+ D++DYF Q   S   + N N       ++ C+
Sbjct: 396 PFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQ---TEFLCQ 455

Query: 203 TSVSQKQQAIQALGASPKINFQT-CGTGLHHQERNR 234
              S ++   +    +  ++ Q   G+G H Q   R
Sbjct: 456 QFDSLEKPVSREQARTGNLSIQNPGGSGFHQQSEKR 485

[Close]

BLAST of MELO3C006897 vs. TrEMBL
Match: V4SDV2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004647mg PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 75/216 (34.72%), Postives = 109/216 (50.46%), Query Frame = 1


Query: 23  DVLEKHVGTVEIEDKADIKKQGPLLKLPMEDLLTDPCIAFAVKTLTGGVLDASISSAASL 82
           D+  KH   +E + +AD K   PL+ LP  DLL+DPCIAFA+KTLTG   + S     SL
Sbjct: 350 DLTMKHPDNIETDIEAD-KNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSL 409

Query: 83  TPNYVDP----FTSFTPNERRNSGPENKLNEKVARPELPVTRVGKVENNVVEKLKSTLEL 142
             N        F      ++R +  E K        E       K++ +  EKL++ L+L
Sbjct: 410 ESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANVESKLKTD--EKLENPLDL 469

Query: 143 PVGEIFSDPCIEFAIKTLTGEIPLDNNPDIEDYFHQFSTSKTEKTNANASDQPGLDYFCK 202
           P  +I+ DPCIEFAIKTLTG IP+ N+ D++DYF Q   S   + N N       ++ C+
Sbjct: 470 PFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQ---TEFLCQ 529

Query: 203 TSVSQKQQAIQALGASPKINFQT-CGTGLHHQERNR 234
              S ++   +    +  ++ Q   G+G H Q   R
Sbjct: 530 QFDSLEKPVSREQARTGNLSIQNPGGSGFHQQSEKR 559

[Close]

BLAST of MELO3C006897 vs. TrEMBL
Match: V4U7E2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004647mg PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 75/216 (34.72%), Postives = 109/216 (50.46%), Query Frame = 1


Query: 23  DVLEKHVGTVEIEDKADIKKQGPLLKLPMEDLLTDPCIAFAVKTLTGGVLDASISSAASL 82
           D+  KH   +E + +AD K   PL+ LP  DLL+DPCIAFA+KTLTG   + S     SL
Sbjct: 276 DLTMKHPDNIETDIEAD-KNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSL 335

Query: 83  TPNYVDP----FTSFTPNERRNSGPENKLNEKVARPELPVTRVGKVENNVVEKLKSTLEL 142
             N        F      ++R +  E K        E       K++ +  EKL++ L+L
Sbjct: 336 ESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANVESKLKTD--EKLENPLDL 395

Query: 143 PVGEIFSDPCIEFAIKTLTGEIPLDNNPDIEDYFHQFSTSKTEKTNANASDQPGLDYFCK 202
           P  +I+ DPCIEFAIKTLTG IP+ N+ D++DYF Q   S   + N N       ++ C+
Sbjct: 396 PFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQ---TEFLCQ 455

Query: 203 TSVSQKQQAIQALGASPKINFQT-CGTGLHHQERNR 234
              S ++   +    +  ++ Q   G+G H Q   R
Sbjct: 456 QFDSLEKPVSREQARTGNLSIQNPGGSGFHQQSEKR 485

[Close]

BLAST of MELO3C006897 vs. TAIR10
Match: AT5G52230.1 (AT5G52230.1 methyl-CPG-binding domain protein 13)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-11
Identity = 56/157 (35.67%), Postives = 67/157 (42.68%), Query Frame = 1


Query: 51  MEDLLTDPCIAFAVKTLTGGVLDASISSAASLTP--NYV-DPFTSFTPNERRNSGPENKL 110
           + DL  DPCIAFA+KTLTG  L    + A S  P  N+      SFTP      G  N  
Sbjct: 602 LADLCKDPCIAFAIKTLTGESLCLLNTPAISSNPINNHTKQKGVSFTPE---TPGNVNTC 661

Query: 111 NEKVARPELPVTRVGKVENNVVEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLD-NNP 170
           +EK+  P  P                     P   I+ DPCI+FAIKTLTG IP+  + P
Sbjct: 662 SEKLVFPSPP---------------------PGANIWQDPCIDFAIKTLTGAIPIGLDEP 721

Query: 171 DIEDYFHQFSTSKTEKTNANASDQPGLDYFCKTSVSQ 204
           D +    Q  TS T  T      Q   DY    +V +
Sbjct: 722 DTKSK-SQGMTSTTAATQEAKGRQNNCDYMTNKTVGK 733

HSP 2 Score: 41.2 bits (95), Expect = 1.1e-03
Identity = 32/123 (26.02%), Postives = 48/123 (39.02%), Query Frame = 1


Query: 81  SLTPNYVDPFTSFTPNERRNSGPE---------NKLNEKVARPELPVTRVGKVENNVVEK 140
           S+ P  + P  S  PN+ +   P          NKL  + +   +      +V       
Sbjct: 536 SVKPTQISPLRS--PNKGKQPHPSDSGSAIQRRNKLANEYSNSSVVRGTCSEVMEKSTNS 595

Query: 141 LKSTLELPVGEIFSDPCIEFAIKTLTGE------IPLDNNPDIEDYFHQFSTSKTEKTNA 189
             S  +  + ++  DPCI FAIKTLTGE       P  ++  I ++  Q   S T +T  
Sbjct: 596 FSSAFDSTLADLCKDPCIAFAIKTLTGESLCLLNTPAISSNPINNHTKQKGVSFTPETPG 655

[Close]

BLAST of MELO3C006897 vs. NCBI nr
Match: gi|659077428|ref|XP_008439199.1| (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis melo])

HSP 1 Score: 484.6 bits (1246), Expect = 1.0e-133
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 1


Query: 1   MKMKSEDAYEQQPKPESSLPPEDVLEKHVGTVEIEDKADIKKQGPLLKLPMEDLLTDPCI 60
           MKMKSEDAYEQQPKPESSLPPEDVLEKHVGTVEIEDKADIKKQGPLLKLPMEDLLTDPCI
Sbjct: 1   MKMKSEDAYEQQPKPESSLPPEDVLEKHVGTVEIEDKADIKKQGPLLKLPMEDLLTDPCI 60

Query: 61  AFAVKTLTGGVLDASISSAASLTPNYVDPFTSFTPNERRNSGPENKLNEKVARPELPVTR 120
           AFAVKTLTGGVLDASISSAASLTPNYVDPFTSFTPNERRNSGPENKLNEKVARPELPVTR
Sbjct: 61  AFAVKTLTGGVLDASISSAASLTPNYVDPFTSFTPNERRNSGPENKLNEKVARPELPVTR 120

Query: 121 VGKVENNVVEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNPDIEDYFHQFSTSKT 180
           VGKVENNVVEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNPDIEDYFHQFSTSKT
Sbjct: 121 VGKVENNVVEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNPDIEDYFHQFSTSKT 180

Query: 181 EKTNANASDQPGLDYFCKTSVSQKQQAIQALGASPKINFQTCGTGLHHQERNRNEFQRH 240
           EKTNANASDQPGLDYFCKTSVSQKQQAIQALGASPKINFQTCGTGLHHQERNRNEFQRH
Sbjct: 181 EKTNANASDQPGLDYFCKTSVSQKQQAIQALGASPKINFQTCGTGLHHQERNRNEFQRH 239

[Close]

BLAST of MELO3C006897 vs. NCBI nr
Match: gi|449446179|ref|XP_004140849.1| (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X4 [Cucumis sativus])

HSP 1 Score: 445.7 bits (1145), Expect = 5.3e-122
Identity = 223/239 (93.31%), Postives = 228/239 (95.40%), Query Frame = 1


Query: 1   MKMKSEDAYEQQPKPESSLPPEDVLEKHVGTVEIEDKADIKKQGPLLKLPMEDLLTDPCI 60
           MKMKS DAYEQQPKPESSLPPEDVLEKHVG VEIEDKA++KKQGPLLKLPMEDLLTDPCI
Sbjct: 285 MKMKSADAYEQQPKPESSLPPEDVLEKHVGMVEIEDKANVKKQGPLLKLPMEDLLTDPCI 344

Query: 61  AFAVKTLTGGVLDASISSAASLTPNYVDPFTSFTPNERRNSGPENKLNEKVARPELPVTR 120
           AFAVKTLTG VLDASISS ASLTPN+VDPFT FTPNER NSGPENKLNEKVA PELPV R
Sbjct: 345 AFAVKTLTGDVLDASISSDASLTPNHVDPFTPFTPNERCNSGPENKLNEKVACPELPVAR 404

Query: 121 VGKVENNVVEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNPDIEDYFHQFSTSKT 180
           VGKVENN VEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNN DIEDYF+QFSTSKT
Sbjct: 405 VGKVENN-VEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNRDIEDYFYQFSTSKT 464

Query: 181 EKTNANASDQPGLDYFCKTSVSQKQQAIQALGASPKINFQTCGTGLHHQERNRNEFQRH 240
           EKTN NASDQPGLDYFCKT+VSQKQQAIQALGASPKINFQTCGTGLHHQERNRNEFQRH
Sbjct: 465 EKTNENASDQPGLDYFCKTNVSQKQQAIQALGASPKINFQTCGTGLHHQERNRNEFQRH 522

[Close]

BLAST of MELO3C006897 vs. NCBI nr
Match: gi|778679543|ref|XP_011651145.1| (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X3 [Cucumis sativus])

HSP 1 Score: 445.7 bits (1145), Expect = 5.3e-122
Identity = 223/239 (93.31%), Postives = 228/239 (95.40%), Query Frame = 1


Query: 1   MKMKSEDAYEQQPKPESSLPPEDVLEKHVGTVEIEDKADIKKQGPLLKLPMEDLLTDPCI 60
           MKMKS DAYEQQPKPESSLPPEDVLEKHVG VEIEDKA++KKQGPLLKLPMEDLLTDPCI
Sbjct: 317 MKMKSADAYEQQPKPESSLPPEDVLEKHVGMVEIEDKANVKKQGPLLKLPMEDLLTDPCI 376

Query: 61  AFAVKTLTGGVLDASISSAASLTPNYVDPFTSFTPNERRNSGPENKLNEKVARPELPVTR 120
           AFAVKTLTG VLDASISS ASLTPN+VDPFT FTPNER NSGPENKLNEKVA PELPV R
Sbjct: 377 AFAVKTLTGDVLDASISSDASLTPNHVDPFTPFTPNERCNSGPENKLNEKVACPELPVAR 436

Query: 121 VGKVENNVVEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNPDIEDYFHQFSTSKT 180
           VGKVENN VEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNN DIEDYF+QFSTSKT
Sbjct: 437 VGKVENN-VEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNRDIEDYFYQFSTSKT 496

Query: 181 EKTNANASDQPGLDYFCKTSVSQKQQAIQALGASPKINFQTCGTGLHHQERNRNEFQRH 240
           EKTN NASDQPGLDYFCKT+VSQKQQAIQALGASPKINFQTCGTGLHHQERNRNEFQRH
Sbjct: 497 EKTNENASDQPGLDYFCKTNVSQKQQAIQALGASPKINFQTCGTGLHHQERNRNEFQRH 554

[Close]

BLAST of MELO3C006897 vs. NCBI nr
Match: gi|778679540|ref|XP_011651144.1| (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucumis sativus])

HSP 1 Score: 445.7 bits (1145), Expect = 5.3e-122
Identity = 223/239 (93.31%), Postives = 228/239 (95.40%), Query Frame = 1


Query: 1   MKMKSEDAYEQQPKPESSLPPEDVLEKHVGTVEIEDKADIKKQGPLLKLPMEDLLTDPCI 60
           MKMKS DAYEQQPKPESSLPPEDVLEKHVG VEIEDKA++KKQGPLLKLPMEDLLTDPCI
Sbjct: 324 MKMKSADAYEQQPKPESSLPPEDVLEKHVGMVEIEDKANVKKQGPLLKLPMEDLLTDPCI 383

Query: 61  AFAVKTLTGGVLDASISSAASLTPNYVDPFTSFTPNERRNSGPENKLNEKVARPELPVTR 120
           AFAVKTLTG VLDASISS ASLTPN+VDPFT FTPNER NSGPENKLNEKVA PELPV R
Sbjct: 384 AFAVKTLTGDVLDASISSDASLTPNHVDPFTPFTPNERCNSGPENKLNEKVACPELPVAR 443

Query: 121 VGKVENNVVEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNPDIEDYFHQFSTSKT 180
           VGKVENN VEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNN DIEDYF+QFSTSKT
Sbjct: 444 VGKVENN-VEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNRDIEDYFYQFSTSKT 503

Query: 181 EKTNANASDQPGLDYFCKTSVSQKQQAIQALGASPKINFQTCGTGLHHQERNRNEFQRH 240
           EKTN NASDQPGLDYFCKT+VSQKQQAIQALGASPKINFQTCGTGLHHQERNRNEFQRH
Sbjct: 504 EKTNENASDQPGLDYFCKTNVSQKQQAIQALGASPKINFQTCGTGLHHQERNRNEFQRH 561

[Close]

BLAST of MELO3C006897 vs. NCBI nr
Match: gi|778679537|ref|XP_011651143.1| (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis sativus])

HSP 1 Score: 445.7 bits (1145), Expect = 5.3e-122
Identity = 223/239 (93.31%), Postives = 228/239 (95.40%), Query Frame = 1


Query: 1   MKMKSEDAYEQQPKPESSLPPEDVLEKHVGTVEIEDKADIKKQGPLLKLPMEDLLTDPCI 60
           MKMKS DAYEQQPKPESSLPPEDVLEKHVG VEIEDKA++KKQGPLLKLPMEDLLTDPCI
Sbjct: 360 MKMKSADAYEQQPKPESSLPPEDVLEKHVGMVEIEDKANVKKQGPLLKLPMEDLLTDPCI 419

Query: 61  AFAVKTLTGGVLDASISSAASLTPNYVDPFTSFTPNERRNSGPENKLNEKVARPELPVTR 120
           AFAVKTLTG VLDASISS ASLTPN+VDPFT FTPNER NSGPENKLNEKVA PELPV R
Sbjct: 420 AFAVKTLTGDVLDASISSDASLTPNHVDPFTPFTPNERCNSGPENKLNEKVACPELPVAR 479

Query: 121 VGKVENNVVEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNPDIEDYFHQFSTSKT 180
           VGKVENN VEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNN DIEDYF+QFSTSKT
Sbjct: 480 VGKVENN-VEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNRDIEDYFYQFSTSKT 539

Query: 181 EKTNANASDQPGLDYFCKTSVSQKQQAIQALGASPKINFQTCGTGLHHQERNRNEFQRH 240
           EKTN NASDQPGLDYFCKT+VSQKQQAIQALGASPKINFQTCGTGLHHQERNRNEFQRH
Sbjct: 540 EKTNENASDQPGLDYFCKTNVSQKQQAIQALGASPKINFQTCGTGLHHQERNRNEFQRH 597

The following BLAST results are available for this feature:

BLAST of MELO3C006897 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MBD13_ARATH	1.9e-10	35.67	Methyl-CpG-binding domain-containing protein 13 OS=Arabidopsis thaliana GN=MBD13...	[more]

BLAST of MELO3C006897 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6H4_CUCSA	3.7e-122	93.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G181990 PE=4 SV=1	[more]
M5XCT8_PRUPE	2.4e-25	42.78	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007049mg PE=4 SV=1	[more]
M5XCT8_PRUPE	2.9e-02	38.89	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007049mg PE=4 SV=1	[more]
V4SDV2_9ROSI	2.3e-23	34.72	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004647mg PE=4 SV=1	[more]
V4U7E2_9ROSI	2.3e-23	34.72	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004647mg PE=4 SV=1	[more]

BLAST of MELO3C006897 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52230.1	1.1e-11	35.67	methyl-CPG-binding domain protein 13	[more]

BLAST of MELO3C006897 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077428\|ref\|XP_008439199.1\|	1.0e-133	100.00	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis m...	[more]
gi\|449446179\|ref\|XP_004140849.1\|	5.3e-122	93.31	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X4 [Cucumis s...	[more]
gi\|778679543\|ref\|XP_011651145.1\|	5.3e-122	93.31	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X3 [Cucumis s...	[more]
gi\|778679540\|ref\|XP_011651144.1\|	5.3e-122	93.31	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucumis s...	[more]
gi\|778679537\|ref\|XP_011651143.1\|	5.3e-122	93.31	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis s...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0007126	meiotic nuclear division
biological_process	GO:0006298	mismatch repair
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030983	mismatched DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006897T1	MELO3C006897T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12396	METHYL-CPG BINDING PROTEIN, MBD	coord: 42..163 score: 4.9
None	No IPR available	PANTHER	PTHR12396:SF7	SUBFAMILY NOT NAMED	coord: 42..163 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006897	Csa3G181990	Cucumber (Chinese Long) v2	cumeB236
MELO3C006897	Cla006190	Watermelon (97103) v1	mewmB461
MELO3C006897	ClCG05G007960	Watermelon (Charleston Gray)	mewcgB427
MELO3C006897	Cla97C05G089970	Watermelon (97103) v2	mewmbB434
MELO3C006897	Bhi01G000972	Wax gourd	mewgoB541
MELO3C006897	CSPI03G16830	Wild cucumber (PI 183967)	cpimeB230
MELO3C006897	Cucsa.107660	Cucumber (Gy14) v1	cgymeB142
MELO3C006897	CmaCh16G001310	Cucurbita maxima (Rimu)	cmameB296
MELO3C006897	CmaCh18G012410	Cucurbita maxima (Rimu)	cmameB375
MELO3C006897	CmoCh18G012640	Cucurbita moschata (Rifu)	cmomeB368
MELO3C006897	CmoCh16G001360	Cucurbita moschata (Rifu)	cmomeB289
MELO3C006897	Lsi05G012390	Bottle gourd (USVL1VR-Ls)	lsimeB379
MELO3C006897	Cp4.1LG09g00820	Cucurbita pepo (Zucchini)	cpemeB043
MELO3C006897	Cp4.1LG14g06090	Cucurbita pepo (Zucchini)	cpemeB190
MELO3C006897	CsGy3G016920	Cucumber (Gy14) v2	cgybmeB200
MELO3C006897	Carg15137	Silver-seed gourd	carmeB0966
MELO3C006897	Carg22094	Silver-seed gourd	carmeB0732
MELO3C006897	CsaV3_3G017000	Cucumber (Chinese Long) v3	cucmeB236

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
MELO3C006897	MELO3C005647	Melon (DHL92) v3.5.1	memeB015

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006897	Silver-seed gourd	carmeB0709
MELO3C006897	Silver-seed gourd	carmeB0911
MELO3C006897	Cucumber (Chinese Long) v3	cucmeB415
MELO3C006897	Watermelon (97103) v2	mewmbB424
MELO3C006897	Watermelon (97103) v2	mewmbB437
MELO3C006897	Wax gourd	mewgoB518
MELO3C006897	Melon (DHL92) v3.5.1	memeB150
MELO3C006897	Cucumber (Gy14) v1	cgymeB438
MELO3C006897	Cucumber (Gy14) v1	cgymeB497
MELO3C006897	Cucurbita maxima (Rimu)	cmameB579
MELO3C006897	Cucurbita maxima (Rimu)	cmameB582
MELO3C006897	Cucurbita maxima (Rimu)	cmameB853
MELO3C006897	Cucurbita moschata (Rifu)	cmomeB567
MELO3C006897	Cucurbita moschata (Rifu)	cmomeB570
MELO3C006897	Cucurbita moschata (Rifu)	cmomeB835
MELO3C006897	Wild cucumber (PI 183967)	cpimeB249
MELO3C006897	Wild cucumber (PI 183967)	cpimeB403
MELO3C006897	Cucumber (Chinese Long) v2	cumeB254
MELO3C006897	Cucumber (Chinese Long) v2	cumeB405
MELO3C006897	Watermelon (Charleston Gray)	mewcgB422
MELO3C006897	Watermelon (Charleston Gray)	mewcgB433
MELO3C006897	Watermelon (97103) v1	mewmB470
MELO3C006897	Watermelon (97103) v1	mewmB481
MELO3C006897	Cucurbita pepo (Zucchini)	cpemeB697
MELO3C006897	Cucurbita pepo (Zucchini)	cpemeB701
MELO3C006897	Bottle gourd (USVL1VR-Ls)	lsimeB036
MELO3C006897	Bottle gourd (USVL1VR-Ls)	lsimeB375
MELO3C006897	Cucumber (Gy14) v2	cgybmeB353