Lsi09G002880 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G002880
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Methyl-CpG-binding domain-containing protein 13
Location	chr09 : 3007633 .. 3016220 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAATAGTGTGGACAGTGAAGGCAATGGAATCAGACGCATCCATAACGGACACGAATCGATCTGGTTAACTCAATCTTCTTCATCTCTCTTTTCTCACGTTGCTTCCATTTTTAACCCAACGGTACAACCAGAAGATCCAATCCAATCCACCGATTCAATGGTCAAACCCCGAACTCACATACAATCCCAATGAACCCCCTAACTCAAAAAGACAGAAAAAAGCAGTTTTTGGTTGCGTCTTCAACAACCCCATCTTCGATTTCGACTTCGACTTCCAGCCCTAAGCTTTTTCTTACCTTCCACTAACAGACCCACCTCACTGAATAATCCTTTCCTCGCTCAAAATATGGATTTTCAATCGCACCCACGTGTCCGCACCTCAATTTCTTCCTTTCCTTTCCCATTTCCCCTCTTTCTTTGACCTAATCAATTCCCTCTTTTGCTGTTGAGCTTAGCGTTTTAGCTCCATAGATCTCGATTGCGCAGAATCTGGAGCTGATCTCTTGTTGATTCTCCTCTCAACATGGTGGCTAAGGGTTCGCCGGATTGGCTTCCCTCTGGTTGGACTGTGCAGTATAAAGTCCAGAAGACGGGCCGGAAAATTAGGGTAATTTTGTTCTTGCTCTTAGTTTATTCTTTTCTAGATTTTCGGTGGCATTTTCTGTGCTGCTTAGATGTTTGATTATTGGTTTTGTGTTTTTTAGCTGGAGTTCGTGAGTTTTAGGGTGGATGATGTGTGTTATGTGCCCCTATTTTGTTTGCTTTTTTGATTCAAATGTTGAGTCTGGAAGATTCCATAGTCTGTAAGGTTCCATATTATTGGATGTAGTGTTCTGAATGTTCAACCTTTTTTATTTGATGGGCATACAGTATAGGATGTCTTCTGGAAAAGAATAGTATGGTTCGTTTTGTTTCTATGGTGTTTGTGTCCTGGTTTTGCATATTGGTAGCTCTCTTGTAAACTACCCTTGTTTCTGATTGTGATGCCGGCTCAAAGTTCTTCCTTCATCTTGCACCTTCAACTGTGGTTCTAGCTAGTCAGGGTGGAGTTTTGTCCCCTTGCTGAAACTCAACGGTCTCTGCCTAATTAAAAACAGAGCTTTTGTTGTCCATTCACATCCTATCCTAAGTAATGGAAAGGAATCCGAAGTCTCCTATATAGGAAGAAACTTGACATGTCTGAAAGAATAGGGAGAGAAGGAGATAATCGTAATTCCATTATGAGATGATAAATCAGGGTGGAAGAAGTTCATGGAACTTTTACAAAAATTAGCTTTTACAGAATAGATTGCAAAAGAGCTATAGTGCTAACAGGATAGTACTTCTATGATGGTTGGTTTAAAATTTGGCAAAGCCTATTGAAAATTTTGCGATTGGATTCTTTGTTGAACCCTTGCCAACCAAATAAAACCCTGCAATCTAGTATATATGATGTAGAAGCATGGAAGAAATTAGATTTTTATGCATGAAATATGAATAGAGGTTGGTGCACCCTGAGGCCATTTTCCCTCAAATATGGAGCCTGGGACGGCTTAGATTCATGGATAGATAGAGGTTACCTATTATGAAAGATGGAGGGTGGACAAAGAATAGGAATCTGCCGTATATAATATGTCAAATGTGGAAATCTTATGCAACATGCCCAAAAGTATGATGGAGGACACGTTGATTGCACCAAGAGAACAAATCCAACAATGGATGGAAAGGAAGTATGCACTGAAGTCATGCATTCCTTATTGTTGAAACTGGAACATTCAACACGATTATCTTAGAAGTGGTGGCTAATGTAGTGGTTATTTGAATGCAAAAACAATGTTTAGAATACATGATGGGTTCACATGAGTGGAGGCCAGAAAATACTTCTAATCAATACTTGCAACCACTTCTATAAAATACATCCAACAGCCAAATTGGCCCTTCCTCCGTAAATGGTGGTCTCTAAAACTGCAAACTTATGGCATCTCGTGCGCTTTCCTGATAGTTTGCAAGGTCGGACAGATTCTTTTGGCCAACCTCTTAAGCTTCAAATTGGAAGTTGGAAGTTTGTGGAGTTAGGACTAAAGCGCCCCTAGTTTGATACATTTTATTGGGTAGGGAGAAATATTGGGAACCAAAATAGGTGTCTGATGAAGGAAGGGATAGGATAATCTCAGGTAAATCCTCAGGTTGATCCCTTTTACCCTCATTTGTGTATTAAACCCTGCATTTTTTTTTTGAGGAATAGAATGATGAAGGAAGGATTGGAGTAATCTTACGTAAATCCCTTTAACCTTCATTTATGTATTAATTCCTATAAATAAGGAGTTTCCTCTGTTTTGGACACTCGGCTCTTGGTTGATTCTTGGAGTAAACTCTCCTTTAGTAATTCTTAGGCTACATCATTCTTTGTAGCTATTGCTTGTCCCATCCCCACTTCCTTACATAATTTTGCTATGCCCATTTCCCAAATTTGATAGATTTAAGTTGAGAAAAGGAATGAAAAATCCCTCAAATTCTCTGAAATGTCTTATTTCTTCACTTGTTCAGTTCTGTAAGCACCAGTGGCATGATAGGTATATACTTTTAGGCCTATGAAATGATTTCCTGAAAATTGAAATCGTGAGAATGTAAGCCTACTCATGCACTTTGACTAATATTATGAAATAGCTGTTTGATTCTACCATATTTGGTATTGGTAACTATCAGTGATGTTAATATTTTAACTATGTAACCCTACTAAAAAAGAAGAAGAAAAAAGACTAGGCAACCTCGTCTTAAAGATATTTGTGTTAACTGCTTGTCCCTTTGATCATTGGGCCAATCCATGTGGTTCACATGGAACGAAATATTGATTGGGAAAACTCAAAATTACTGTAGTACAACAAATTTATTCACATTACAAATCTTACTCCTTACATCTTTACACTTCATTTATTGCTTGCATTGGGCCAATCCATGTGGTTCACATGGAGTGAATTATTGGTTGGGGGAAAACTCAAATTACTGTATAACAACAATTGTATTCACATTACAAAACTTCCTTCTTACATATTACTCTTCATTTGGGATTTTGTAGTTCTATACAAACTTGGAGACTGGAAAAAGCTTTTATTATAAGGATGATGTTATTGGCTATATAAAAAGCATTCAGTCTCAAAAGTCTCAACCAACATCGAGGCGCATCAAAACTCAGTTAGGAAATAGTCCAGTGCAAGTGAGTTTGATACCCGGACATTTTTATCTTCAACACTGTCCATTATCTTTAAAGTGGTTTTATTTCTCTCTGGTATAGCTCACGGTGAAAACAAATGAACGCCCTGAATGGTTGCCTGCTGGCTGGAGAGTGGAGTCAAGAACACGAATGAGTGGTTCAAATGTTGGAGCCGTTTACAAGGTAACATATGTATGCTTAATTTTTCTTTAACCACAATTTTATTTTTAGCTTTTGTTGCCCTTTTCCTGTAAATACTCATGGAATACTTTTAAGATGGTCGGATTCTAGAATTGCCCATGCTGCTAATTTTGTACCTACGATTGGTTAGTTTTCGTGGGATTGATAAAATGATACATGTAATTAAACAACTGTTCCTCAACGAATTAGCAGAGCGATGCTTTGTGAATTTCAATTCTTGCACAAGCTAACAATCCATAACATGGAAACTAAAAGGGGAAACAAAGGAAAAGGAAATCACCAAACAGGTCCTTCCCTTGTTGGTCAGGTTAACCCTCACCCGGTCAAAATAAATAAACAAGGAAAAACCCTTTTTTTTCTAGCTCATGAACAGAGATCACGTTTTCCTTCTGGTTTTGTTACTTGCAAGCAAATGTAGATAATTTTCTTAACCAATTTTAAATGATTTCCACTGATGTCATGTTGACACTTTGAATGTATGATTAAAAATAAGCTAAGTCCATTCTTCATTGAGTTCTTACAATACATACCTCTCGCTTGTTGCAGTGTTACATTGATCCAGTGACGGACAACAGATTTTATTCTAAGCCAGAGGTATTTCGGTATCTAAGAACTGTAAAGAACAAATTGTGCACATTGAAAGAGAGAAGGACAAGCAACGACACGAACTCTAGGAGCCACGTATGTACCCGACCAATCTTTTATTTAATTTTTCTACTCTTTTTCCTTTTACCCTAATGTTTTTGTCTTCATATAAAAAGAACTTGAAGGTATGTCAAGTGGGCCATGAAGGAAACATTTTTAAATAACGGACGAACTTCTTGTTGATGTAAAGGAAAGTTACAAAGGTGTTCACAGAAAACAAACTCCCATAGGGAGTGAAAGAAAACAGAAGATAAAAGTACAGAATGCTAATGAGAAAAAATAAAAGCCTCCAAATTCATACCAACAATAGACAAATTAGAAAGAGAGCACCATTAAGGTGGTTTGTAGGCTTTGTAGATGACTACGTCAAATTGCTTCAACCACATTTTGGACTCTTAAAATTTTCTTTGGTTTCTTTCCAACCAAATTGGATTTAACAGCATTAACCCACAGAAGATTGGCACGAGGAAAAACAATTAAACCAGAGAGTAATTGAGTGGGGTTCTTGTCTGTCTCTTTATCCAAAACCTGGAGGATATTAAAGATCATGGAAAGAGAACCAACTATTAAGAGCATATGTGCACATTCACCATCCCCACAAATTGATTGGAATGACACCAAAGAAGATGGATGCACGAGAAAGATTTTACTAGTCTTCACTCCGAAACCTGGGCACCAATTTAATGTTGGGATTTGTCATAAAACTTAAAACTACTTTATATATTGTTTAGTGTACTGTTTTTCTGTGCAATTGTTCCTTCTTTCTCATCATAACACCACGGGAATAATACACATGCTTTAAACAAAAAGGTCATATGATCAGTAATGTCTCAATATGGAAGGCCAATACTTTATTTGTCTGTCTTCTAATACTTTTACAGGGACTAAACAACTGCTACCGGGAGATGTTATGAGTAAATCTTAGAAAATAGAATAATCACAATATGAAGCTTTTAAGATTGAGATGCGATATTTGTTATATTTGAATGAAACTTGTAAGGGATGTAAAATCAATTCTTTCCCTTACCAAAAGGTAAGGAAATAATCATTGTAAAAGGAAAAAAAAAGGAAAATCTGATTCAACACAGTTTTAATTTTTGGGGACAACCATCATGGACTAACATTGTGATTGTTGGTGTCAATGATAAAAGTAAAGAGTTCAGAGAGAGAAATTTCAAACCATGATAGCTACCCACTTGGGATTTAAAATCCCACAAGCTTCTTGGACCACGAATGGTTGGCCCCGTGAAGTTAGTTAAGGTGCGTGTTAGTTGACTCAAACACTAATAATCCTAGATATCAAAAAGGAAGTTTTAGGAGACTCTGAAGTGCCGCTTGCTTAAATGTGCTTCTTGGACTAACTTATGAAATGTTTTTTTCTATTTGCGTATTGAGTTATGTAGCTGATTTTCATATGTACTCTAGGTTGTTATTGAGCATTATAAAGATGAAGATTTGCCGCCTGGATGGATAAAGGAAATCAAGATCAAAGAAAGAGCGGATGGCATTAGGAAAGACCCGGTATGGGCTTCTTACTCCTGCCTTGCACCCCCCTCCCTCTCCTTCCAAACAAAAAAAAGGAAGATAAACTTATGCATATGTAAGAATACACGGGGGCACAGGAAGGTCATGCATTCATGGTCGCCTTACTGTTTCAAGCACGATTCATCTGCATTGTTAAGTTGTAATTTATTGGGTCGTTCCTCTCTTAGTTATATCCCTCTTATTGGGTACCTGCTACAGTTTTACATAGATCCAAAATCTGGATACATATTCCGCTCCAAGAAGGATGTTTTCCGCTATCTCGAGACTGGAGAGATCAGTAGACATGCATTTAAACCAAAGGAAGGGGGCGATGATGATCAAGAGTTGATAAGGGACAAAAAATCAGTAAGTACATCCCTTGTTAGACTCACGTAGGAATGCTTTAACAGTATTACTTGTTTCAATCAGTTTGGTTTCTAATTTTCAGTCATTTTGACTTTATGCTGTCATCATTATGTTTCTTCAGTATGATATCGCTGTCACATGTTGCATATTAGCAGTATGTTCAATTTCCTCCTTTGTTAGTCGTAGTTATTATATTATATCTTATGTTTGTCTACAAAAAAAAAAAAAAAAAAAATTTCTGCTGCAAACACATTAAAAAATGTGTAAAGTTCTTATTGGAGATGTTGCACTGGGAATCTTTTTAGGGTAGGCAAGCTGCAAGATGATGTTTGCATAGTACATATATTTTCTATTGAGTTCAACCATATGTGAGATGGAAATTCAAACATTTGACCTTTTGATGAAGGTTATAATGTTTTAACTAGTTAAACTATGTGTAAGTTGGCAATTAGGATGGATCATTTTATTGCTATTTGTTTGCATAATTAAATTTTACATCACATTCAGATCTGTAGATACAACATTAGCAACTATGTTGTAATTTTTGAGGAAACTGAACCTGATTGAAAGCCCAATAAACCCATTAATGGAAAGATAGAAAAATGAACCCAAATAACGACAGGCTTCAGTTCGTCTTTAGCTTAGCTTAAATGGTTTCCAATGAGGATGATTTTTAAATTCTGAATTGTTGCTTGCTTCTATTTTAGCGACCTTCTACTGTTAGAGGACAGAAATTGGAGCACTCTGCAGCAACCCCACAACCTCTTGCAGGTAGAATATTTGTAGGATACTATAATTTGCCACTTTTTATCGATTAAAGAGTATACTGAAACTCTGTCCACTACATAGGAATTTAACTTTTATCGTCTTTGATGATTTAATGTGCAACTATACATGTAGGTGAGGAAATGCCAACAGGGAGACGTTCAAAACCTCCAGGAGTCCATATTCAACAATTGAAGCAATGTCGGAACGTGTCTTCTGAACTAAAAGATGCTTTAGTTCCTCCTGTTGAAACTGTTGAAGAGATTGTTTCATCTCAAGAAGTGGTCAGGGAGTCTACTAAAATCGAAGAGAAAAGTCATAGTTCAGCATCTCCTAAAGCTGATCATCCAGAAGGTAAGGAAACTGAAAGAGTATCTTCTGATAATGTACCAGTTTCAACTTCTGCATCTGAGTCAGATCAAGAGAAGGCATTGCCAAAAGCTGAAAATCTCGAAAGTAATAAAATTGATGTAGTAACTCCTGATAACAGTCCACTTCCAACCACTGCATCGAAGTTGGAACACGAGAAGATTGCAATCAGTAATATGATGGAAAGCGGTGACAATGGGGAAAAGACAAAGACGAGGAAGTTCAAGAAAAAGAAAGACATCAACTTGCCTCGGAGGTCTTCAAAACGGCTTGCTGGTCTTGAACCAGAGTTGGTGCCTAAAGCAGAGGCAAAAGAAGTTCCTCAAGCTTCAAATAGAAATAGTTTCACTGAAGTTAGTCCAGATGCTGGCCTAACTGTGAAAGCAGATGCGGATGTTCACAATGCAGATAAAGCATCCCAGCAGCTTAATGTGAGGTTGGAAAGAGACCACGAAGATCATGTACCTAATCTCAAGGACACACCCTTGCATGAAAATCCTTCCAATAAGAGGAAAACTCCTCTTGCTTGCAGCCTAGATGTCCCTGAAGAGAAAATACAGAAAGTAGAAATTAAAAAGAATGATGGAAAGATCGAAGCACAGCTGAATGTTCCAATTGCTGATTTTTGGTCAGACCCATGCTTGGAATTTGCAATCAAGACTCTTACGGGCGCATTGCCAGTGGAGAATGCCACTGCCACTGATGAGCCAGTTTCTAATCCTACAGTCAGCTTCCTGCAAGGACAGAGCTCAGTAAAGAATGGGCCGAGAAGTTGCATGAATAAGAGAACTCAAGGGAACAAAAGAGTCAAGAACAAGAAAGAGCTCACTTCAAATCGTCAATCTCCAAGTATTAATGGGTTCAAACCTGAACTAGCATCAAATATAATTTCCTTTGAACAAGCAAACCCAAACCATCATTCAAATGAAGCTGTTCTGGCTTTTAATTTATCAGATGGTAGAATACATGGACAACCACAAATTAAGAACGAACAATATAGAACATCTTGCCAAATCATGCCACCCAGTGAGTTGCGTCATCCCCCGCCTGAGGTAAATTCCGAACGATTTAATAGCACCAATGCATGTCAAGAGAGCAGCAAAATGGTGCTCGATGATCAGCATCAAATGCTTCAAACGAAGGGCCATATGACATCAGAAACTCCATTATCCTTTCCCTTTGGGGATTCCTGGGCAGATCCATGCTTGGATTTTGCATTCAAGACTCTCACAGGTGCAATACCAATAGACGATAGTCTAGAAATTCAAAGCTTCTTTGAGGAGCGACTCGAGTCCTCTCGCAGCCAAAAAGACAGTAGCCCAGCACTGCCAGATTTTGGATCCCCTAACCTCTTCCAAAACGATATATCATCCCACTTCGACGGACCCGAAAAATCTGTTTCAGCACAGCACTTGAGTTTAGATCCTCAGCTGACTCTGGGAAACGTGAGTCTACCAAGCTGCAGTGGATTCACTTCCCAACAGCAGTCTTCCGTAGATAGAAACAGATCTTTTAGGGGAAGGTGA

mRNA sequence

GTGAATAGTGTGGACAGTGAAGGCAATGGAATCAGACGCATCCATAACGGACACGAATCGATCTGGTTAACTCAATCTTCTTCATCTCTCTTTTCTCACGTTGCTTCCATTTTTAACCCAACGGTACAACCAGAAGATCCAATCCAATCCACCGATTCAATGGTCAAACCCCGAACTCACATACAATCCCAATGAACCCCCTAACTCAAAAAGACAGAAAAAAGCAGTTTTTGGTTGCGTCTTCAACAACCCCATCTTCGATTTCGACTTCGACTTCCAGCCCTAAGCTTTTTCTTACCTTCCACTAACAGACCCACCTCACTGAATAATCCTTTCCTCGCTCAAAATATGGATTTTCAATCGCACCCACGTGTCCGCACCTCAATTTCTTCCTTTCCTTTCCCATTTCCCCTCTTTCTTTGACCTAATCAATTCCCTCTTTTGCTGTTGAGCTTAGCGTTTTAGCTCCATAGATCTCGATTGCGCAGAATCTGGAGCTGATCTCTTGTTGATTCTCCTCTCAACATGGTGGCTAAGGGTTCGCCGGATTGGCTTCCCTCTGGTTGGACTGTGCAGTATAAAGTCCAGAAGACGGGCCGGAAAATTAGGTTCTATACAAACTTGGAGACTGGAAAAAGCTTTTATTATAAGGATGATGTTATTGGCTATATAAAAAGCATTCAGTCTCAAAAGTCTCAACCAACATCGAGGCGCATCAAAACTCAGTTAGGAAATAGTCCAGTGCAACTCACGGTGAAAACAAATGAACGCCCTGAATGGTTGCCTGCTGGCTGGAGAGTGGAGTCAAGAACACGAATGAGTGGTTCAAATGTTGGAGCCGTTTACAAGTGTTACATTGATCCAGTGACGGACAACAGATTTTATTCTAAGCCAGAGGTTGTTATTGAGCATTATAAAGATGAAGATTTGCCGCCTGGATGGATAAAGGAAATCAAGATCAAAGAAAGAGCGGATGGCATTAGGAAAGACCCGGTATGGGCTTCTTACTCCTGCCTTGCACCCCCCTCCCTCTCCTTCCAAACAAAAAAAAGGAAGATAAACTTATGCATATGTAAGAATACACGGGGGCACAGGAAGGTCATGCATTCATGGTCGCCTTACTGTTTCAAGCACGATTCATCTGCATTGTTAAGTTGTAATTTATTGGGTCGTTCCTCTCTTAGTTATATCCCTCTTATTGGGTACCTGCTACAGTTTTACATAGATCCAAAATCTGGATACATATTCCGCTCCAAGAAGGATGTTTTCCGCTATCTCGAGACTGGAGAGATCAGTAGACATGCATTTAAACCAAAGGAAGGGGGCGATGATGATCAAGAGTTGATAAGGGACAAAAAATCACGACCTTCTACTGTTAGAGGACAGAAATTGGAGCACTCTGCAGCAACCCCACAACCTCTTGCAGGTGAGGAAATGCCAACAGGGAGACGTTCAAAACCTCCAGGAGTCCATATTCAACAATTGAAGCAATGTCGGAACGTGTCTTCTGAACTAAAAGATGCTTTAGTTCCTCCTGTTGAAACTGTTGAAGAGATTGTTTCATCTCAAGAAGTGGTCAGGGAGTCTACTAAAATCGAAGAGAAAAGTCATAGTTCAGCATCTCCTAAAGCTGATCATCCAGAAGGTAAGGAAACTGAAAGAGTATCTTCTGATAATGTACCAGTTTCAACTTCTGCATCTGAGTCAGATCAAGAGAAGGCATTGCCAAAAGCTGAAAATCTCGAAAGTAATAAAATTGATGTAGTAACTCCTGATAACAGTCCACTTCCAACCACTGCATCGAAGTTGGAACACGAGAAGATTGCAATCAGTAATATGATGGAAAGCGGTGACAATGGGGAAAAGACAAAGACGAGGAAGTTCAAGAAAAAGAAAGACATCAACTTGCCTCGGAGGTCTTCAAAACGGCTTGCTGGTCTTGAACCAGAGTTGGTGCCTAAAGCAGAGGCAAAAGAAGTTCCTCAAGCTTCAAATAGAAATAGTTTCACTGAAGTTAGTCCAGATGCTGGCCTAACTGTGAAAGCAGATGCGGATGTTCACAATGCAGATAAAGCATCCCAGCAGCTTAATGTGAGGTTGGAAAGAGACCACGAAGATCATGTACCTAATCTCAAGGACACACCCTTGCATGAAAATCCTTCCAATAAGAGGAAAACTCCTCTTGCTTGCAGCCTAGATGTCCCTGAAGAGAAAATACAGAAAGTAGAAATTAAAAAGAATGATGGAAAGATCGAAGCACAGCTGAATGTTCCAATTGCTGATTTTTGGTCAGACCCATGCTTGGAATTTGCAATCAAGACTCTTACGGGCGCATTGCCAGTGGAGAATGCCACTGCCACTGATGAGCCAGTTTCTAATCCTACAGTCAGCTTCCTGCAAGGACAGAGCTCAGTAAAGAATGGGCCGAGAAGTTGCATGAATAAGAGAACTCAAGGGAACAAAAGAGTCAAGAACAAGAAAGAGCTCACTTCAAATCGTCAATCTCCAAGTATTAATGGGTTCAAACCTGAACTAGCATCAAATATAATTTCCTTTGAACAAGCAAACCCAAACCATCATTCAAATGAAGCTGTTCTGGCTTTTAATTTATCAGATGGTAGAATACATGGACAACCACAAATTAAGAACGAACAATATAGAACATCTTGCCAAATCATGCCACCCAGTGAGTTGCGTCATCCCCCGCCTGAGGTAAATTCCGAACGATTTAATAGCACCAATGCATGTCAAGAGAGCAGCAAAATGGTGCTCGATGATCAGCATCAAATGCTTCAAACGAAGGGCCATATGACATCAGAAACTCCATTATCCTTTCCCTTTGGGGATTCCTGGGCAGATCCATGCTTGGATTTTGCATTCAAGACTCTCACAGGTGCAATACCAATAGACGATAGTCTAGAAATTCAAAGCTTCTTTGAGGAGCGACTCGAGTCCTCTCGCAGCCAAAAAGACAGTAGCCCAGCACTGCCAGATTTTGGATCCCCTAACCTCTTCCAAAACGATATATCATCCCACTTCGACGGACCCGAAAAATCTGTTTCAGCACAGCACTTGAGTTTAGATCCTCAGCTGACTCTGGGAAACGTGAGTCTACCAAGCTGCAGTGGATTCACTTCCCAACAGCAGTCTTCCGTAGATAGAAACAGATCTTTTAGGGGAAGGTGA

Coding sequence (CDS)

ATGGTGGCTAAGGGTTCGCCGGATTGGCTTCCCTCTGGTTGGACTGTGCAGTATAAAGTCCAGAAGACGGGCCGGAAAATTAGGTTCTATACAAACTTGGAGACTGGAAAAAGCTTTTATTATAAGGATGATGTTATTGGCTATATAAAAAGCATTCAGTCTCAAAAGTCTCAACCAACATCGAGGCGCATCAAAACTCAGTTAGGAAATAGTCCAGTGCAACTCACGGTGAAAACAAATGAACGCCCTGAATGGTTGCCTGCTGGCTGGAGAGTGGAGTCAAGAACACGAATGAGTGGTTCAAATGTTGGAGCCGTTTACAAGTGTTACATTGATCCAGTGACGGACAACAGATTTTATTCTAAGCCAGAGGTTGTTATTGAGCATTATAAAGATGAAGATTTGCCGCCTGGATGGATAAAGGAAATCAAGATCAAAGAAAGAGCGGATGGCATTAGGAAAGACCCGGTATGGGCTTCTTACTCCTGCCTTGCACCCCCCTCCCTCTCCTTCCAAACAAAAAAAAGGAAGATAAACTTATGCATATGTAAGAATACACGGGGGCACAGGAAGGTCATGCATTCATGGTCGCCTTACTGTTTCAAGCACGATTCATCTGCATTGTTAAGTTGTAATTTATTGGGTCGTTCCTCTCTTAGTTATATCCCTCTTATTGGGTACCTGCTACAGTTTTACATAGATCCAAAATCTGGATACATATTCCGCTCCAAGAAGGATGTTTTCCGCTATCTCGAGACTGGAGAGATCAGTAGACATGCATTTAAACCAAAGGAAGGGGGCGATGATGATCAAGAGTTGATAAGGGACAAAAAATCACGACCTTCTACTGTTAGAGGACAGAAATTGGAGCACTCTGCAGCAACCCCACAACCTCTTGCAGGTGAGGAAATGCCAACAGGGAGACGTTCAAAACCTCCAGGAGTCCATATTCAACAATTGAAGCAATGTCGGAACGTGTCTTCTGAACTAAAAGATGCTTTAGTTCCTCCTGTTGAAACTGTTGAAGAGATTGTTTCATCTCAAGAAGTGGTCAGGGAGTCTACTAAAATCGAAGAGAAAAGTCATAGTTCAGCATCTCCTAAAGCTGATCATCCAGAAGGTAAGGAAACTGAAAGAGTATCTTCTGATAATGTACCAGTTTCAACTTCTGCATCTGAGTCAGATCAAGAGAAGGCATTGCCAAAAGCTGAAAATCTCGAAAGTAATAAAATTGATGTAGTAACTCCTGATAACAGTCCACTTCCAACCACTGCATCGAAGTTGGAACACGAGAAGATTGCAATCAGTAATATGATGGAAAGCGGTGACAATGGGGAAAAGACAAAGACGAGGAAGTTCAAGAAAAAGAAAGACATCAACTTGCCTCGGAGGTCTTCAAAACGGCTTGCTGGTCTTGAACCAGAGTTGGTGCCTAAAGCAGAGGCAAAAGAAGTTCCTCAAGCTTCAAATAGAAATAGTTTCACTGAAGTTAGTCCAGATGCTGGCCTAACTGTGAAAGCAGATGCGGATGTTCACAATGCAGATAAAGCATCCCAGCAGCTTAATGTGAGGTTGGAAAGAGACCACGAAGATCATGTACCTAATCTCAAGGACACACCCTTGCATGAAAATCCTTCCAATAAGAGGAAAACTCCTCTTGCTTGCAGCCTAGATGTCCCTGAAGAGAAAATACAGAAAGTAGAAATTAAAAAGAATGATGGAAAGATCGAAGCACAGCTGAATGTTCCAATTGCTGATTTTTGGTCAGACCCATGCTTGGAATTTGCAATCAAGACTCTTACGGGCGCATTGCCAGTGGAGAATGCCACTGCCACTGATGAGCCAGTTTCTAATCCTACAGTCAGCTTCCTGCAAGGACAGAGCTCAGTAAAGAATGGGCCGAGAAGTTGCATGAATAAGAGAACTCAAGGGAACAAAAGAGTCAAGAACAAGAAAGAGCTCACTTCAAATCGTCAATCTCCAAGTATTAATGGGTTCAAACCTGAACTAGCATCAAATATAATTTCCTTTGAACAAGCAAACCCAAACCATCATTCAAATGAAGCTGTTCTGGCTTTTAATTTATCAGATGGTAGAATACATGGACAACCACAAATTAAGAACGAACAATATAGAACATCTTGCCAAATCATGCCACCCAGTGAGTTGCGTCATCCCCCGCCTGAGGTAAATTCCGAACGATTTAATAGCACCAATGCATGTCAAGAGAGCAGCAAAATGGTGCTCGATGATCAGCATCAAATGCTTCAAACGAAGGGCCATATGACATCAGAAACTCCATTATCCTTTCCCTTTGGGGATTCCTGGGCAGATCCATGCTTGGATTTTGCATTCAAGACTCTCACAGGTGCAATACCAATAGACGATAGTCTAGAAATTCAAAGCTTCTTTGAGGAGCGACTCGAGTCCTCTCGCAGCCAAAAAGACAGTAGCCCAGCACTGCCAGATTTTGGATCCCCTAACCTCTTCCAAAACGATATATCATCCCACTTCGACGGACCCGAAAAATCTGTTTCAGCACAGCACTTGAGTTTAGATCCTCAGCTGACTCTGGGAAACGTGAGTCTACCAAGCTGCAGTGGATTCACTTCCCAACAGCAGTCTTCCGTAGATAGAAACAGATCTTTTAGGGGAAGGTGA

Protein sequence

MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLETGKSFYYKDDVIGYIKSIQSQKSQPTSRRIKTQLGNSPVQLTVKTNERPEWLPAGWRVESRTRMSGSNVGAVYKCYIDPVTDNRFYSKPEVVIEHYKDEDLPPGWIKEIKIKERADGIRKDPVWASYSCLAPPSLSFQTKKRKINLCICKNTRGHRKVMHSWSPYCFKHDSSALLSCNLLGRSSLSYIPLIGYLLQFYIDPKSGYIFRSKKDVFRYLETGEISRHAFKPKEGGDDDQELIRDKKSRPSTVRGQKLEHSAATPQPLAGEEMPTGRRSKPPGVHIQQLKQCRNVSSELKDALVPPVETVEEIVSSQEVVRESTKIEEKSHSSASPKADHPEGKETERVSSDNVPVSTSASESDQEKALPKAENLESNKIDVVTPDNSPLPTTASKLEHEKIAISNMMESGDNGEKTKTRKFKKKKDINLPRRSSKRLAGLEPELVPKAEAKEVPQASNRNSFTEVSPDAGLTVKADADVHNADKASQQLNVRLERDHEDHVPNLKDTPLHENPSNKRKTPLACSLDVPEEKIQKVEIKKNDGKIEAQLNVPIADFWSDPCLEFAIKTLTGALPVENATATDEPVSNPTVSFLQGQSSVKNGPRSCMNKRTQGNKRVKNKKELTSNRQSPSINGFKPELASNIISFEQANPNHHSNEAVLAFNLSDGRIHGQPQIKNEQYRTSCQIMPPSELRHPPPEVNSERFNSTNACQESSKMVLDDQHQMLQTKGHMTSETPLSFPFGDSWADPCLDFAFKTLTGAIPIDDSLEIQSFFEERLESSRSQKDSSPALPDFGSPNLFQNDISSHFDGPEKSVSAQHLSLDPQLTLGNVSLPSCSGFTSQQQSSVDRNRSFRGR

Homology

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BLAST of Lsi09G002880 vs. TrEMBL
Match: A0A0A0KKL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154900 PE=4 SV=1)

HSP 1 Score: 1112.4 bits (2876), Expect = 0.0e+00
Identity = 630/907 (69.46%), Postives = 687/907 (75.74%), Query Frame = 1


Query: 1   MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLETGKSFYYKDDVIGYIKSIQSQKSQPT 60
           MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLE GKSFYYKDDVIG             
Sbjct: 1   MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLENGKSFYYKDDVIG------------- 60

Query: 61  SRRIKTQLGNSPVQLTVKTNERPEWLPAGWRVESRTRMSGSNVGAVYKCYIDPVTDNRFY 120
                           +K+ +  +  P    V  +T+   S +    K    P       
Sbjct: 61  ---------------YIKSTQSQKSQPTSRGV--KTQSGNSPLQLTVKSNEHP------- 120

Query: 121 SKPEVVIEHYKDEDLPPGWIKEIKIKERADGIRKDPVWASY-------SCLAPPSLSFQT 180
                       E LP GW  +++ + R  G     V+  Y          + P +    
Sbjct: 121 ------------EWLPAGW--KVESRTRMSGSNVGAVYKCYIDPVTDSRFYSKPEVFRHL 180

Query: 181 KKRKINLCICKNTRGHRKVMHSWSPYCFKHDSSALLSCNLLGRSSLSYIPLIGYLLQFYI 240
           +  K  LC  K  R       S S    +H     L    +    +           FYI
Sbjct: 181 RTVKNKLCTLKERRTSNG-KKSRSRVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDPFYI 240

Query: 241 DPKSGYIFRSKKDVFRYLETGEISRHAFKPKEGGDDDQELIRDKKSRPSTVRGQKLEHSA 300
           DPKSGY+FRSKK+VFRYLETGEISRHAFKPKEGGD+DQELI DKKSR STVRGQKLE SA
Sbjct: 241 DPKSGYVFRSKKEVFRYLETGEISRHAFKPKEGGDEDQELISDKKSR-STVRGQKLEQSA 300

Query: 301 ATPQPLAGEEMPTGRRSKPPGVHIQQLKQCRNVSSELKDALVPPVETVEEIVSSQE-VVR 360
           ATPQ LAGEEM TGRRS+ PGVHIQQLKQ +NVSS LKDALV PVETVEEI+  QE V++
Sbjct: 301 ATPQSLAGEEMATGRRSERPGVHIQQLKQRQNVSSALKDALVLPVETVEEIILPQEAVIK 360

Query: 361 ESTKIEEKSHSS-ASPKADHPEGKETERVSSDNVPVSTSASESDQE-KALPKAENLESNK 420
           EST+IEEKSH   +SPKADH EG E ERVSSDNV VS  ASESDQE KALPK + LESNK
Sbjct: 361 ESTEIEEKSHKDLSSPKADHTEGNENERVSSDNVAVSICASESDQEIKALPKVQKLESNK 420

Query: 421 ID-VVTPDNSPLPTTASKLEHEKIAISNMMESGDNGEKTKTRKFKKKKDINLPRRSSKRL 480
           I+ VVTPDNSPL  TASKLEHEKIAISN MESG NG KTKTRK KKKKD+NLPRRSSKRL
Sbjct: 421 IEIVVTPDNSPLINTASKLEHEKIAISNTMESGVNGRKTKTRKSKKKKDVNLPRRSSKRL 480

Query: 481 AGLEPELVPKAEAKEVPQASNRNSFTEVSPDAGLTVKADADVHNADKASQQLNVRLERDH 540
           AGLEPELVPK +AKEVPQ SNRN FTEVSPDAGL VKADADVHN DKASQQL+VR E+D+
Sbjct: 481 AGLEPELVPKEDAKEVPQVSNRNIFTEVSPDAGLAVKADADVHNTDKASQQLDVRSEKDN 540

Query: 541 EDHVPNLKDTPLHEN---------PSNKRKTPLACSLDVPEEKIQKVEI-KKNDGKIEAQ 600
           +DH PN KDTPL EN         PSNKRKTPLAC +D PEEKIQ+VE  KK+DGK+EAQ
Sbjct: 541 KDHTPNHKDTPLRENHKDMSLCENPSNKRKTPLACGVDAPEEKIQRVETEKKDDGKMEAQ 600

Query: 601 LNVPIADFWSDPCLEFAIKTLTGALPVENATATDEPVSNPTVSFLQGQSSVKNGPRSCMN 660
           LNVPIADFWSDPCLEFAIKTLTGALPVENAT T+EPVSNPTV+FLQGQSSVKNGP S MN
Sbjct: 601 LNVPIADFWSDPCLEFAIKTLTGALPVENATTTNEPVSNPTVNFLQGQSSVKNGPGSRMN 660

Query: 661 KRTQGNKRVKNKKELTSNRQSPSINGFKPELASNIISFEQANPNHHSNEAVLAFNLSDGR 720
           KRTQGNKR++NKKELT++ QSPSING KPELASNIISF+QANPNHHSNEAVLAFNLSDGR
Sbjct: 661 KRTQGNKRIRNKKELTTSSQSPSINGLKPELASNIISFDQANPNHHSNEAVLAFNLSDGR 720

Query: 721 IHGQPQIKNEQYRTSCQIMPPSELRHPPPEVNSERFNSTNACQESSKMVLDDQHQMLQTK 780
           IHGQP  KNEQY+TSC+I+ PSEL H  P+V+SERFN  +AC ES+ M+LDD HQ+LQT 
Sbjct: 721 IHGQPS-KNEQYKTSCEILTPSELHHSLPQVDSERFNGISACHESNNMMLDDPHQILQTN 780

Query: 781 GHMTSETPLSFPFGDSWADPCLDFAFKTLTGAIPIDDSLEIQSFFEERLESSRSQKDSSP 840
            HMTSE PLSFPFGDSWADPCLDFAFKTLTGAIPIDDSLEIQSFFEERLESSRSQKDSSP
Sbjct: 781 DHMTSEVPLSFPFGDSWADPCLDFAFKTLTGAIPIDDSLEIQSFFEERLESSRSQKDSSP 840

Query: 841 ALPDFGSPNLFQNDISSHFDGPEKSVSAQHLSLDPQLTLGNVSLPSCSGFTSQQQSSVDR 887
           ALPDFGSPNLFQNDISSHFDGPEKSVS QHLSLDPQL+LGNVSLPSCSGFTSQQQSSVDR
Sbjct: 841 ALPDFGSPNLFQNDISSHFDGPEKSVSGQHLSLDPQLSLGNVSLPSCSGFTSQQQSSVDR 853

[Close]

BLAST of Lsi09G002880 vs. TrEMBL
Match: M5WEZ6_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027142mg PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.7e-68
Identity = 229/660 (34.70%), Postives = 336/660 (50.91%), Query Frame = 1


Query: 231 FYIDPKSGYIFRSKKDVFRYLETGEISRHAFKPKEGGDDDQELIRDKKSRPSTVRGQKLE 290
           +Y DP SGY+FRSK  V  YLETGEISRHAFKPK    ++  LI D +S   TV   K  
Sbjct: 33  YYTDPVSGYVFRSKNAVMHYLETGEISRHAFKPKNKCTNELTLIND-ESHEITVSANK-- 92

Query: 291 HSAATPQPLAGEEMPTGRRSKPPGVHIQQLKQCRNVSSELKDALVPPVETVEEIVSSQEV 350
                   ++G E+P                     SS L+D  V P E+   +  + +V
Sbjct: 93  ----GSSEISGLELP------------------ETESSNLQDKRV-PTESGVAVALTADV 152

Query: 351 VRESTKIEEKSHSSASPKADHPEGKETERVSSDNVPVSTSASESDQEKALPKAENLESNK 410
           V+E    E+          D P  + ++       P    A   + +++L K E+  ++ 
Sbjct: 153 VQEKHLPEDIVEECPRTMEDCPPIRSSQ-------PKPEVADIHEGKRSLLKVEHSATDP 212

Query: 411 IDVVTPDNSPLPTTASKLEHEKIAISNMMESGD-NGEKTKTRKFKKKKDINLPRRSSKRL 470
             ++   N P+ T A+   +E  ++  +ME G+    +T +RK K K+ +NLPRRSSKRL
Sbjct: 213 GKIILAGNEPVLTPAADTLNENNSLKIVMEKGNVRTTQTGSRKSKSKEKLNLPRRSSKRL 272

Query: 471 AGLEPELVPKA-EAKEVPQASNRNSFTEVSPDAGLTVKADADVHNADKASQQLNVRLERD 530
           AGLEPE V  +  +++  Q   + S ++ S DA L          A  A QQ+    E  
Sbjct: 273 AGLEPEQVANSVSSEQALQVVRKCSKSDGSQDAVL----------ASDADQQVGAASEVV 332

Query: 531 HEDHVPNLKDTPLHENPSNKRKTPLACSLDVPEEKIQKVEIKKNDG-KIEAQLNVPIADF 590
              H      +  HE   NK + PL   + VP+E+ QK+E ++ D  K E + ++    F
Sbjct: 333 VAHHTSTDIKSTSHEEALNKGRMPLDDQM-VPKEQQQKLESERMDSEKPEPEFSLL---F 392

Query: 591 WSDPCLEFAIKTLTGALPVENATATDEPVSNPTVSFLQGQSSVKNGPRSCMNKRTQGNKR 650
            SDPCLEFA KTLTG LP+ + T  +EP+  P    LQ ++S+++      ++ T+ NK 
Sbjct: 393 GSDPCLEFAFKTLTGELPIAD-TVDNEPILKPAADVLQKENSLESEMEKSCSRNTRVNKS 452

Query: 651 VKNKKELTSNRQSPSINGFKPELASNIISFEQANPN----HHSNEAVLAFNLSDGRI--- 710
            KNK+    +R S  + G +PEL  N +S E+A  N       ++A+ A N +D      
Sbjct: 453 KKNKEIKLPHRSSKRLAGVEPELLPNSMSSERALRNATGRSSKSKAIQAVNSADEASQLP 512

Query: 711 HGQPQIKNEQYRTSCQIMPPSELRHPPPEVN-SERFNSTNACQESSKMVLDDQHQMLQTK 770
              P+ K   Y  +  I    +   P    N SE F    A  +      + +   ++  
Sbjct: 513 EAGPETKFANYPCTTTI----DTSIPEQSSNKSENFLEDQAIPQEKSQKFETEKAAIE-- 572

Query: 771 GHMTSETPLSFPFGDSWADPCLDFAFKTLTGAIPIDDSLEIQSFFEERLESSRSQKDSSP 830
                E   SFPF DSW+DPCLDFAFKTLTGAIPI+D L  Q +F+E++E+S + +DS  
Sbjct: 573 ---NPEAQFSFPFMDSWSDPCLDFAFKTLTGAIPIEDDL-FQGYFQEKIETSHNHRDSL- 632

Query: 831 ALPDFGSPNLFQNDISSHFDGPEKSVSAQHLSLDPQ-LTLGNVSLPSCSGFTSQQQSSVD 879
           ALPDFGSP+ FQ+DI   FD PE+S+S Q L ++   L  GNV + +C+G  S QQ S++
Sbjct: 633 ALPDFGSPSFFQSDILPQFDAPEQSISGQQLPMNSSFLPSGNVGMSNCNGVASSQQLSMN 633

[Close]

BLAST of Lsi09G002880 vs. TrEMBL
Match: W9R3D9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024324 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 6.0e-61
Identity = 229/694 (33.00%), Postives = 340/694 (48.99%), Query Frame = 1


Query: 230 QFYIDPKSGYIFRSKKDVFRYLETGEISRHAFKPKEGGDDDQELIRDKKSRPSTVRGQKL 289
           QFY DP SGY+FRSK+D  RY+ETGEISR A +PKE G +  EL++D+ +  S  + QKL
Sbjct: 4   QFYKDPVSGYVFRSKRDALRYIETGEISRSAIRPKESGSNAPELVKDEIAPSSAAKRQKL 63

Query: 290 EHSAATPQPLAGE---EMPTGRRSKPPGVHIQQLKQCRNVSSELKDALVPPVETVEEIVS 349
           +H A+  Q   G+   ++     SK       ++   + VS E +       ETV+    
Sbjct: 64  QHPASKRQLFTGKTESQLSDSELSKTDS----KILSAKRVSPEARVIYASGDETVQGKHP 123

Query: 350 SQEVVRESTKIEEKSHSSASPKADHPEGKETERVSSDNVPVSTSASESDQEKALPKAENL 409
              V++E  + EEK   + S      EG + E+ S+ +  VS +   S   K L   E  
Sbjct: 124 LNNVIQECVEPEEKCSPNNSTSQKR-EGSKREKSSNGDTRVSRN---SKVNKVLDGPEKS 183

Query: 410 ESNKIDVVTPDNSPLPTTASKLEHEKIAISNMMESGDNGE-KTKTRKFKKKKDINLPRRS 469
              K D+   D  P+ T      H+K  +    E    G+ +  +RK K KK  ++P RS
Sbjct: 184 RGEK-DLAKID--PVSTATLNTLHDKNFLETATEKSSTGDNRVNSRKSKDKKVHDMPPRS 243

Query: 470 SKRLAGLEPELVPKAEAKE--VPQASNRNSFTEVSPDAGLTVKADADVHNADKASQQLNV 529
           SKRLAG +P+L    E  E  +  A  ++  TE + ++ LT     D   +    +++  
Sbjct: 244 SKRLAGNKPDLTVNLELGERALIAAIRKSRKTEATQNSVLTSDGLVD---SPFVQREITS 303

Query: 530 RLERDHEDHVPNLKDTPLHENPSNKRKTPLACSLDVPEEKIQKVEIKKNDGKIEAQLNVP 589
            +E    +   N K+ PL E+PSNK   P    +   EE  QK+E +K D     QL+  
Sbjct: 304 EIELVDNNASTNTKN-PLEEDPSNKSTVPPDDQV-AQEELHQKLETEKVDDNPAPQLSFL 363

Query: 590 IADFWSDPCLEFAIKTLTGALPVENATATDEPVSNPTVSFLQGQSSVKNGPRSCMNKRTQ 649
              F SDPCLEFA KTL G LP++  T+ + P+       LQ ++ +++G ++    ++Q
Sbjct: 364 ---FGSDPCLEFAFKTLIGELPLD-GTSVNGPILTREAGTLQHENLLESGMKNSSTGKSQ 423

Query: 650 GNK-RVKNKKELT-SNRQSPSINGFKPELASNIISFEQA------NPNHHSNEAVLAFNL 709
            +K + KNKKEL    R S  + G +PEL ++ ++ E+A      NPN      +   NL
Sbjct: 424 FSKTKSKNKKELNLPRRSSKRLAGVEPELVASSVASERALQDVSINPN--DKGTISGTNL 483

Query: 710 SDGR---IHGQPQIK---NEQYRTSCQIMPPSELR-----------------HPPPEVNS 769
            D     +   P+I+       +T   +  PS+ R                 H       
Sbjct: 484 LDKAKQPLRAGPKIELTNRSSTKTDASVPEPSDKRKNSLEDLVAAPQEQPRMHETERAEL 543

Query: 770 ERFNSTNACQESSKMVLDDQHQMLQTKGHMTSETPLSFPFGDSWADPCLDFAFKTLTGAI 829
           ++  ST    E+            +  G    +TP  F   D W+DPCLDFAFKTLTG I
Sbjct: 544 KKPESTQRMYETENSGPQLHESRKEELGSPEPDTP--FSIADYWSDPCLDFAFKTLTGVI 603

Query: 830 PIDDSLEIQSFFEERLESSRSQKDSSPALPDFGSPNLFQNDISSHFDGPEKSVSAQHL-- 882
           PI+D+L  Q  F+E+++   + K+ + ALPDFGS +LF+ DISS FD  EKS S+Q    
Sbjct: 604 PIEDTL-AQGCFQEQVDVPDNCKNGNGALPDFGSSSLFETDISSQFDTLEKSSSSQQFAG 663

[Close]

BLAST of Lsi09G002880 vs. TrEMBL
Match: A0A061G5M5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_016211 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 3.8e-47
Identity = 153/452 (33.85%), Postives = 217/452 (48.01%), Query Frame = 1


Query: 1   MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLETGKSFYYKDDVIGYIK--SIQSQKSQ 60
           M AK SPDWLP+GWT+Q+KVQKTGR+I  Y NL TG+ F+ KDD+I Y K  S +    Q
Sbjct: 1   MTAKTSPDWLPAGWTLQFKVQKTGRRITHYVNLATGQKFFTKDDLIRYTKTGSTKCDDLQ 60

Query: 61  PTSRRIKTQLGNSPVQLTVKTNERPEWLPAGWRVESRTRMSGSNVGAVYKCYIDPVTDNR 120
           PT R+ K    N  +   V  NERPEWLP  W +E +TR SG  +G  YK YIDP T +R
Sbjct: 61  PTLRQTKMPPANGSMDTAVNANERPEWLPKNWFMELKTRKSGVRIGKHYKIYIDPSTGSR 120

Query: 121 FYSK---------------------------PEVVIE-HYKDEDLPPGWIKEIKIKERAD 180
           FYSK                            E+V++ H   E LP  W  E+K  +   
Sbjct: 121 FYSKLQVFRFLNHVEQKSSKPKQKKKVSHSTSEIVVKAHEHPEWLPKNWFTELKTYKSGA 180

Query: 181 GIRKDPVWASYSCLAPPS--LSFQTKKRKINLCICKNTRGHRKVMHSWSPYCFKHDSSAL 240
              K     SY     PS  L F ++            +G +K   S      K    AL
Sbjct: 181 KFGK-----SYKIYVDPSTGLRFHSRPEVFRFL----DKGEQKSTKS------KPKKRAL 240

Query: 241 LSCN--LLGRSSLSYIPLIGYLLQ--------------FYIDPKSGYIFRSKKDVFRYLE 300
            S +  +  +S++  +P  G++ +              +Y DP SGY+FRSKKD+ RYLE
Sbjct: 241 CSTSKVVTRKSTVDDLP-AGWIKEVKIKRHANGVRRDPYYTDPASGYVFRSKKDILRYLE 300

Query: 301 TGEISRHAFKPKEGGDDDQELIRDKKSRPSTVRGQKLEHSAATPQPLAGEEMPTGRRSKP 360
           TGEI R+AF PK+   DDQ LI  +KS+    + QK++H     Q     E  T  RS  
Sbjct: 301 TGEIGRYAFLPKKKHSDDQNLIHTEKSQLPAAKRQKVKHPVTRRQLFTARE--TSDRSIL 360

Query: 361 PGVHIQQLKQCRN----VSSELKDALVPPVETVEEIVSSQEVVRESTKIEEKSHSSASPK 401
             +  +  ++ ++      + L    VP  ++  E++++           +KS+ S S  
Sbjct: 361 SHLEAETFEKGQSEKDYTETRLATTSVPQSQSYVEVIAT----------ADKSNWSCSVA 420

[Close]

BLAST of Lsi09G002880 vs. TrEMBL
Match: A0A067K0Z5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20630 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.3e-42
Identity = 203/673 (30.16%), Postives = 308/673 (45.77%), Query Frame = 1


Query: 270  DQELIRDKKSRPSTVRGQKLEHSAATPQPLAGEEMPTGRRSKPPGVHIQQLKQCRNVSSE 329
            D  L+    S     +GQ    SA     + G+E    R       + + L  CR+ S  
Sbjct: 398  DNSLLVQANSEADNKQGQNSYESA-----IKGDESYKRRTHTSKADNKRGLLPCRS-SKR 457

Query: 330  LKDALVPPVETVEEIVSSQEVVRESTKIEE------KSHSSASPKADHPEGKETERV--- 389
            L       V     IV +     +S KIE       KS   A  K D  + +   ++   
Sbjct: 458  LAGIEPELVANSVSIVQALPKTIKSPKIEAILAVGLKSDVLADKKCDQIQAESITQILDH 517

Query: 390  SSDNV--PVSTSASESDQE-----KALPKAENLESNKIDVVTPDNSPLPTTASKLEHEKI 449
            SS N   P+    S+ + +       L +A   + N+ ++V+  + P+ T  +    E+ 
Sbjct: 518  SSSNADNPLLEDTSKKNPKYDTTCSVLSEANVSKRNQCEMVSAVDKPVLTPTADTREEE- 577

Query: 450  AISNMMESGDNGE-----KTKTRKFKKKKDINLPRRSSKRLAGLEPELVPKAEAK-EVPQ 509
               N +ESG  G      +    +   KK INLPRRSSKRLAGLEPEL   +E+  +  Q
Sbjct: 578  ---NSLESGAKGRGQGKIQNILIRTSNKKGINLPRRSSKRLAGLEPELAANSESSAQAVQ 637

Query: 510  ASNRNSFTEVSPDAGLTVKADADVHNADKASQQLNVRLERDHEDH-VPNLKDTPLHENPS 569
             +  +  +E    A LT  A      A+K SQ L      D   H + +  ++   E  S
Sbjct: 638  NAKTSCRSESIQAASLTSDA-----LANKPSQPLKAEPRTDFTPHALTDFSNSLTGELSS 697

Query: 570  NKRKTPLACSLDVPEEKIQKVEIKKNDGKIEAQLNVPIADFWSDPCLEFAIKTLTGALPV 629
              + +    +    + ++ K + K N+ K E QL  P  +F SDPCLEFA KTLTG +PV
Sbjct: 698  QNQVSIHGQAFSKDQSQVLKTD-KTNNEKSEPQLIPPFGEFLSDPCLEFAFKTLTGEIPV 757

Query: 630  ENATATDEPVSNPTVSFLQGQSS-VKNGPRSCMNKRTQGNKRVKNKKELTSNRQSPS-IN 689
            E A A +  VS P    +  +   VK   +S   K  + + + K  K+L    QSP  + 
Sbjct: 758  EIA-ADNGQVSTPAADIIDERKFLVKKTDKSVNGKILKNSGKYKKNKKLHLPHQSPEQLL 817

Query: 690  GFKPE----LASNIISFEQANPNHHSNEAVLAFNLS-DGRIHGQPQIKNEQYRTSCQIMP 749
            G + E    L SN ++F+         EA L   L+ D    G  Q   +  +  C    
Sbjct: 818  GLEQEPTASLISNQLAFKTKGRKSSKTEAFLDMGLAADNLAMGAYQQFKDGTKAEC---- 877

Query: 750  PSELRHPPPEVNS--ERFNSTNACQESSKMVLDDQHQMLQTKGHMTS-ETPLSFPFGDSW 809
               + H    VNS  +   S+N     + +  ++  + L+ + ++   E    F F D W
Sbjct: 878  ---VHHQSANVNSVPQIEPSSNRVDHLNDIANEEHSRKLEIEKNVNKPEQQPIFSFADYW 937

Query: 810  ADPCLDFAFKTLTGAIPIDDSLEIQSFFEERLESSRSQK---------------DSSPAL 869
            +DPC +FAFKTLTGAIPI+D+L +Q++ ++++++S++Q+               D S AL
Sbjct: 938  SDPCFEFAFKTLTGAIPIEDNLPVQNYLQQQVDTSQTQRDGYFPQRVDSSQTFTDGSLAL 997

Query: 870  PDFGSPNLFQNDISSHFDGPEKSVSAQHLSLDPQLTL--------GNVSLPSCSGFTSQQ 887
            PD+G P+ FQ DIS HFD PEK +++Q     PQ+ L        GNVSLP+CS   SQQ
Sbjct: 998  PDYGLPSFFQTDISVHFDAPEKQLTSQ-----PQVPLNNPCFLPSGNVSLPTCSSIGSQQ 1041

[Close]

BLAST of Lsi09G002880 vs. TAIR10
Match: AT1G63240.1 (AT1G63240.1 unknown protein)

HSP 1 Score: 69.7 bits (169), Expect = 1.0e-11
Identity = 52/159 (32.70%), Postives = 73/159 (45.91%), Query Frame = 1


Query: 1   MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLETGKSFYYKDDVIGYIKSIQ-SQKSQP 60
           + A  +PDWLP GW     V K GR+ R YT L TGK    KD V+ YIK  +  +K + 
Sbjct: 9   ITADATPDWLPVGWIAHSTVLKRGRQTRTYTQLRTGKKLSTKDQVLEYIKMEKIREKREA 68

Query: 61  TSRRIKTQLGNSPVQLTVKTNERPEWLPAGWRVESRTRMSGSNVGAVYKCYIDPVTDNRF 120
             +R K  L    +Q     +ERP WLP   + E      G N    YK  ++  T N F
Sbjct: 69  GIKRNKASL--KALQDKETASERPSWLPDERKAELEIGYVGGN---PYKMNVN--TSNDF 128

Query: 121 YSKPE---VVIEHYKDEDLPPGWIKEIKIKERADGIRKD 156
            + P+   V+ E+  + +   G + E    E    I +D
Sbjct: 129 NTNPKETVVLDENSMESEDSSGEVYETGCNEITYAIEED 160

[Close]

BLAST of Lsi09G002880 vs. TAIR10
Match: AT5G52230.1 (AT5G52230.1 methyl-CPG-binding domain protein 13)

HSP 1 Score: 52.4 bits (124), Expect = 1.7e-06
Identity = 76/306 (24.84%), Postives = 133/306 (43.46%), Query Frame = 1


Query: 231 FYIDPKSGYIFRSKKDVFRYLETGEISRHAFKPKEGGDDDQELIRDKKSRPSTVRGQKLE 290
           F+IDPKS YIF+S KD  RY+ETG I  +A K KE   +D     D  +  + +R + ++
Sbjct: 62  FFIDPKSEYIFQSFKDASRYVETGNIGHYARKLKESDIEDD----DSGNGKTVLRLEYVD 121

Query: 291 HSAATPQPLAGEEMPTGRRSKPPGV-----HIQQLKQCRNVSSELKDAL--VPPVETVEE 350
             +A       + +   RRSK   +     H +  K   ++S      L  +   E V++
Sbjct: 122 KRSADDVLEKEKTIDDVRRSKRRNLSSSDEHSKNCKMTSDLSIVTSQVLEDLGKKEEVKD 181

Query: 351 IVSSQEVVRESTKIEEKSHSSASPKADHPEGKETERVSSDNVPVSTSA-SESDQEKALPK 410
            +  Q + +  T+ + K+ ++     D      +    S+   V++S  S+  +++A+ K
Sbjct: 182 PIEKQLIAKRVTRSQTKASTTEEVVVDLKRNLSSSNAKSEKDSVNSSVRSQKPKKEAVMK 241

Query: 411 AENLESNKIDVVTPDNSPLPTTASKLEHEKIAISNMMESGDNGEKTKTRKFKKKKDINLP 470
            E  +         D+S    T SK+E +K  +SN                      ++ 
Sbjct: 242 EEEEQ---------DSSEKRITRSKVEEKKNELSN----------------------SVA 301

Query: 471 RRSSKRLAGLE----PELVPKAEAKEVPQASNRNSFTEVSPDAGLTVKADADVHNADKAS 525
           RR+SKRLAG+E    PEL  +A+ + +    +     E +P+     K    V   D+ +
Sbjct: 302 RRTSKRLAGIELEPTPELKTRAKVQRIVPLDD-----EPTPELKTRTKVQRVVPPDDEPT 327

[Close]

BLAST of Lsi09G002880 vs. TAIR10
Match: AT3G46580.1 (AT3G46580.1 methyl-CPG-binding domain protein 5)

HSP 1 Score: 52.0 bits (123), Expect = 2.2e-06
Identity = 27/66 (40.91%), Postives = 35/66 (53.03%), Query Frame = 1


Query: 85  WLPAGWRVESRTRMSGSNVGAVYKCYIDPVTDNRFYSKPEVVIEHYKDEDLPPGWIKEIK 144
           WLP  WR E R R SG+  G V K Y +P+T  +F SK EV+  +Y +   P    K +K
Sbjct: 34  WLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVL--YYLEHGTPKK--KSVK 93

Query: 145 IKERAD 151
             E  D
Sbjct: 94  TAENGD 95

[Close]

BLAST of Lsi09G002880 vs. TAIR10
Match: AT5G59380.1 (AT5G59380.1 methyl-CPG-binding domain 6)

HSP 1 Score: 51.2 bits (121), Expect = 3.8e-06
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 1


Query: 85  WLPAGWRVESRTRMSGSNVGAVYKCYIDPVTDNRFYSKPEVV--IEH 130
           WLP GWRVE + R SG+  G+V K Y +P T  +F S+ EV+  +EH
Sbjct: 80  WLPPGWRVEDKIRTSGATAGSVDKYYYEPNTGRKFRSRTEVLYYLEH 126

[Close]

BLAST of Lsi09G002880 vs. NCBI nr
Match: gi|778699725|ref|XP_011654766.1| (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis sativus])

HSP 1 Score: 1120.1 bits (2896), Expect = 0.0e+00
Identity = 634/914 (69.37%), Postives = 691/914 (75.60%), Query Frame = 1


Query: 1   MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLETGKSFYYKDDVIGYIKSIQSQKSQPT 60
           MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLE GKSFYYKDDVIG             
Sbjct: 1   MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLENGKSFYYKDDVIG------------- 60

Query: 61  SRRIKTQLGNSPVQLTVKTNERPEWLPAGWRVESRTRMSGSNVGAVYKCYIDPVTDNRFY 120
                           +K+ +  +  P    V  +T+   S +    K    P       
Sbjct: 61  ---------------YIKSTQSQKSQPTSRGV--KTQSGNSPLQLTVKSNEHP------- 120

Query: 121 SKPEVVIEHYKDEDLPPGWIKEIKIKERADGIRKDPVWASY-------SCLAPPSLSFQT 180
                       E LP GW  +++ + R  G     V+  Y          + P +    
Sbjct: 121 ------------EWLPAGW--KVESRTRMSGSNVGAVYKCYIDPVTDSRFYSKPEVFRHL 180

Query: 181 KKRKINLCICKNTRGHRKVMHSWSPYCFKHDSSALLSCNLLGR-------SSLSYIPLIG 240
           +  K  LC  K  R       S S    +H     L    +           +   PL  
Sbjct: 181 RTVKNKLCTLKERRTSNG-KKSRSRVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDPLCP 240

Query: 241 YLLQFYIDPKSGYIFRSKKDVFRYLETGEISRHAFKPKEGGDDDQELIRDKKSRPSTVRG 300
             LQFYIDPKSGY+FRSKK+VFRYLETGEISRHAFKPKEGGD+DQELI DKKSR STVRG
Sbjct: 241 TFLQFYIDPKSGYVFRSKKEVFRYLETGEISRHAFKPKEGGDEDQELISDKKSR-STVRG 300

Query: 301 QKLEHSAATPQPLAGEEMPTGRRSKPPGVHIQQLKQCRNVSSELKDALVPPVETVEEIVS 360
           QKLE SAATPQ LAGEEM TGRRS+ PGVHIQQLKQ +NVSS LKDALV PVETVEEI+ 
Sbjct: 301 QKLEQSAATPQSLAGEEMATGRRSERPGVHIQQLKQRQNVSSALKDALVLPVETVEEIIL 360

Query: 361 SQE-VVRESTKIEEKSHSS-ASPKADHPEGKETERVSSDNVPVSTSASESDQE-KALPKA 420
            QE V++EST+IEEKSH   +SPKADH EG E ERVSSDNV VS  ASESDQE KALPK 
Sbjct: 361 PQEAVIKESTEIEEKSHKDLSSPKADHTEGNENERVSSDNVAVSICASESDQEIKALPKV 420

Query: 421 ENLESNKID-VVTPDNSPLPTTASKLEHEKIAISNMMESGDNGEKTKTRKFKKKKDINLP 480
           + LESNKI+ VVTPDNSPL  TASKLEHEKIAISN MESG NG KTKTRK KKKKD+NLP
Sbjct: 421 QKLESNKIEIVVTPDNSPLINTASKLEHEKIAISNTMESGVNGRKTKTRKSKKKKDVNLP 480

Query: 481 RRSSKRLAGLEPELVPKAEAKEVPQASNRNSFTEVSPDAGLTVKADADVHNADKASQQLN 540
           RRSSKRLAGLEPELVPK +AKEVPQ SNRN FTEVSPDAGL VKADADVHN DKASQQL+
Sbjct: 481 RRSSKRLAGLEPELVPKEDAKEVPQVSNRNIFTEVSPDAGLAVKADADVHNTDKASQQLD 540

Query: 541 VRLERDHEDHVPNLKDTPLHEN---------PSNKRKTPLACSLDVPEEKIQKVEI-KKN 600
           VR E+D++DH PN KDTPL EN         PSNKRKTPLAC +D PEEKIQ+VE  KK+
Sbjct: 541 VRSEKDNKDHTPNHKDTPLRENHKDMSLCENPSNKRKTPLACGVDAPEEKIQRVETEKKD 600

Query: 601 DGKIEAQLNVPIADFWSDPCLEFAIKTLTGALPVENATATDEPVSNPTVSFLQGQSSVKN 660
           DGK+EAQLNVPIADFWSDPCLEFAIKTLTGALPVENAT T+EPVSNPTV+FLQGQSSVKN
Sbjct: 601 DGKMEAQLNVPIADFWSDPCLEFAIKTLTGALPVENATTTNEPVSNPTVNFLQGQSSVKN 660

Query: 661 GPRSCMNKRTQGNKRVKNKKELTSNRQSPSINGFKPELASNIISFEQANPNHHSNEAVLA 720
           GP S MNKRTQGNKR++NKKELT++ QSPSING KPELASNIISF+QANPNHHSNEAVLA
Sbjct: 661 GPGSRMNKRTQGNKRIRNKKELTTSSQSPSINGLKPELASNIISFDQANPNHHSNEAVLA 720

Query: 721 FNLSDGRIHGQPQIKNEQYRTSCQIMPPSELRHPPPEVNSERFNSTNACQESSKMVLDDQ 780
           FNLSDGRIHGQP  KNEQY+TSC+I+ PSEL H  P+V+SERFN  +AC ES+ M+LDD 
Sbjct: 721 FNLSDGRIHGQPS-KNEQYKTSCEILTPSELHHSLPQVDSERFNGISACHESNNMMLDDP 780

Query: 781 HQMLQTKGHMTSETPLSFPFGDSWADPCLDFAFKTLTGAIPIDDSLEIQSFFEERLESSR 840
           HQ+LQT  HMTSE PLSFPFGDSWADPCLDFAFKTLTGAIPIDDSLEIQSFFEERLESSR
Sbjct: 781 HQILQTNDHMTSEVPLSFPFGDSWADPCLDFAFKTLTGAIPIDDSLEIQSFFEERLESSR 840

Query: 841 SQKDSSPALPDFGSPNLFQNDISSHFDGPEKSVSAQHLSLDPQLTLGNVSLPSCSGFTSQ 887
           SQKDSSPALPDFGSPNLFQNDISSHFDGPEKSVS QHLSLDPQL+LGNVSLPSCSGFTSQ
Sbjct: 841 SQKDSSPALPDFGSPNLFQNDISSHFDGPEKSVSGQHLSLDPQLSLGNVSLPSCSGFTSQ 860

[Close]

BLAST of Lsi09G002880 vs. NCBI nr
Match: gi|449452356|ref|XP_004143925.1| (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucumis sativus])

HSP 1 Score: 1112.4 bits (2876), Expect = 0.0e+00
Identity = 630/907 (69.46%), Postives = 687/907 (75.74%), Query Frame = 1


Query: 1   MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLETGKSFYYKDDVIGYIKSIQSQKSQPT 60
           MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLE GKSFYYKDDVIG             
Sbjct: 1   MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLENGKSFYYKDDVIG------------- 60

Query: 61  SRRIKTQLGNSPVQLTVKTNERPEWLPAGWRVESRTRMSGSNVGAVYKCYIDPVTDNRFY 120
                           +K+ +  +  P    V  +T+   S +    K    P       
Sbjct: 61  ---------------YIKSTQSQKSQPTSRGV--KTQSGNSPLQLTVKSNEHP------- 120

Query: 121 SKPEVVIEHYKDEDLPPGWIKEIKIKERADGIRKDPVWASY-------SCLAPPSLSFQT 180
                       E LP GW  +++ + R  G     V+  Y          + P +    
Sbjct: 121 ------------EWLPAGW--KVESRTRMSGSNVGAVYKCYIDPVTDSRFYSKPEVFRHL 180

Query: 181 KKRKINLCICKNTRGHRKVMHSWSPYCFKHDSSALLSCNLLGRSSLSYIPLIGYLLQFYI 240
           +  K  LC  K  R       S S    +H     L    +    +           FYI
Sbjct: 181 RTVKNKLCTLKERRTSNG-KKSRSRVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDPFYI 240

Query: 241 DPKSGYIFRSKKDVFRYLETGEISRHAFKPKEGGDDDQELIRDKKSRPSTVRGQKLEHSA 300
           DPKSGY+FRSKK+VFRYLETGEISRHAFKPKEGGD+DQELI DKKSR STVRGQKLE SA
Sbjct: 241 DPKSGYVFRSKKEVFRYLETGEISRHAFKPKEGGDEDQELISDKKSR-STVRGQKLEQSA 300

Query: 301 ATPQPLAGEEMPTGRRSKPPGVHIQQLKQCRNVSSELKDALVPPVETVEEIVSSQE-VVR 360
           ATPQ LAGEEM TGRRS+ PGVHIQQLKQ +NVSS LKDALV PVETVEEI+  QE V++
Sbjct: 301 ATPQSLAGEEMATGRRSERPGVHIQQLKQRQNVSSALKDALVLPVETVEEIILPQEAVIK 360

Query: 361 ESTKIEEKSHSS-ASPKADHPEGKETERVSSDNVPVSTSASESDQE-KALPKAENLESNK 420
           EST+IEEKSH   +SPKADH EG E ERVSSDNV VS  ASESDQE KALPK + LESNK
Sbjct: 361 ESTEIEEKSHKDLSSPKADHTEGNENERVSSDNVAVSICASESDQEIKALPKVQKLESNK 420

Query: 421 ID-VVTPDNSPLPTTASKLEHEKIAISNMMESGDNGEKTKTRKFKKKKDINLPRRSSKRL 480
           I+ VVTPDNSPL  TASKLEHEKIAISN MESG NG KTKTRK KKKKD+NLPRRSSKRL
Sbjct: 421 IEIVVTPDNSPLINTASKLEHEKIAISNTMESGVNGRKTKTRKSKKKKDVNLPRRSSKRL 480

Query: 481 AGLEPELVPKAEAKEVPQASNRNSFTEVSPDAGLTVKADADVHNADKASQQLNVRLERDH 540
           AGLEPELVPK +AKEVPQ SNRN FTEVSPDAGL VKADADVHN DKASQQL+VR E+D+
Sbjct: 481 AGLEPELVPKEDAKEVPQVSNRNIFTEVSPDAGLAVKADADVHNTDKASQQLDVRSEKDN 540

Query: 541 EDHVPNLKDTPLHEN---------PSNKRKTPLACSLDVPEEKIQKVEI-KKNDGKIEAQ 600
           +DH PN KDTPL EN         PSNKRKTPLAC +D PEEKIQ+VE  KK+DGK+EAQ
Sbjct: 541 KDHTPNHKDTPLRENHKDMSLCENPSNKRKTPLACGVDAPEEKIQRVETEKKDDGKMEAQ 600

Query: 601 LNVPIADFWSDPCLEFAIKTLTGALPVENATATDEPVSNPTVSFLQGQSSVKNGPRSCMN 660
           LNVPIADFWSDPCLEFAIKTLTGALPVENAT T+EPVSNPTV+FLQGQSSVKNGP S MN
Sbjct: 601 LNVPIADFWSDPCLEFAIKTLTGALPVENATTTNEPVSNPTVNFLQGQSSVKNGPGSRMN 660

Query: 661 KRTQGNKRVKNKKELTSNRQSPSINGFKPELASNIISFEQANPNHHSNEAVLAFNLSDGR 720
           KRTQGNKR++NKKELT++ QSPSING KPELASNIISF+QANPNHHSNEAVLAFNLSDGR
Sbjct: 661 KRTQGNKRIRNKKELTTSSQSPSINGLKPELASNIISFDQANPNHHSNEAVLAFNLSDGR 720

Query: 721 IHGQPQIKNEQYRTSCQIMPPSELRHPPPEVNSERFNSTNACQESSKMVLDDQHQMLQTK 780
           IHGQP  KNEQY+TSC+I+ PSEL H  P+V+SERFN  +AC ES+ M+LDD HQ+LQT 
Sbjct: 721 IHGQPS-KNEQYKTSCEILTPSELHHSLPQVDSERFNGISACHESNNMMLDDPHQILQTN 780

Query: 781 GHMTSETPLSFPFGDSWADPCLDFAFKTLTGAIPIDDSLEIQSFFEERLESSRSQKDSSP 840
            HMTSE PLSFPFGDSWADPCLDFAFKTLTGAIPIDDSLEIQSFFEERLESSRSQKDSSP
Sbjct: 781 DHMTSEVPLSFPFGDSWADPCLDFAFKTLTGAIPIDDSLEIQSFFEERLESSRSQKDSSP 840

Query: 841 ALPDFGSPNLFQNDISSHFDGPEKSVSAQHLSLDPQLTLGNVSLPSCSGFTSQQQSSVDR 887
           ALPDFGSPNLFQNDISSHFDGPEKSVS QHLSLDPQL+LGNVSLPSCSGFTSQQQSSVDR
Sbjct: 841 ALPDFGSPNLFQNDISSHFDGPEKSVSGQHLSLDPQLSLGNVSLPSCSGFTSQQQSSVDR 853

[Close]

BLAST of Lsi09G002880 vs. NCBI nr
Match: gi|659073741|ref|XP_008437227.1| (PREDICTED: uncharacterized protein LOC103482721 isoform X1 [Cucumis melo])

HSP 1 Score: 646.7 bits (1667), Expect = 5.7e-182
Identity = 405/681 (59.47%), Postives = 451/681 (66.23%), Query Frame = 1


Query: 1   MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLETGKSFYYKDDVIGYIKSIQSQKSQPT 60
           MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLETGKSFYY                   
Sbjct: 1   MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLETGKSFYY------------------- 60

Query: 61  SRRIKTQLGNSPVQLTVKTNERPEWLPAGWRVESRTRMSGSNVGAVYKCYIDPVTDNRFY 120
                       V   +K+ +  +  P    +++++  S             PV      
Sbjct: 61  ---------KDDVLGYIKSTQSQKSQPTSRGIKTQSGNS-------------PVQ----- 120

Query: 121 SKPEVVIEHYKDEDLPPGWIKEIKIKERADGIRKDPVWASY-------SCLAPPSLSFQT 180
              + V  +   E LP GW  +++ + R  G     V+  Y          + P +    
Sbjct: 121 ---QTVKSNEHPEWLPAGW--KVESRTRMSGSNVGAVYKCYIDPVTDSRFYSKPEVFRHL 180

Query: 181 KKRKINLCICKNTRGHRKVMHSWSPYCFKHDSSALLSCNLLGR-------SSLSYIPLIG 240
           +  K  LC  K  R       S S    +H     L    +           +   PL  
Sbjct: 181 RTVKNKLCTLKERRTSNGTK-SRSRVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDPLYP 240

Query: 241 YLLQFYIDPKSGYIFRSKKDVFRYLETGEISRHAFKPKEGGDDDQELIRDKKSRPSTVRG 300
             LQFYIDPKSGYIFRSKK+VFRYLETGEISRHAFKPKEGGD++QELI DKKSR STVRG
Sbjct: 241 TFLQFYIDPKSGYIFRSKKEVFRYLETGEISRHAFKPKEGGDEEQELISDKKSR-STVRG 300

Query: 301 QKLEHSAATPQPLAGEEMPTGRRSKPPGVHIQQLKQCRNVSSELKDALVPPVETVEEIVS 360
           QKLE SAATPQPLAGEEM TGRRS+ PGVHIQQLKQ RNVSS LKDALV PVETVEEI+ 
Sbjct: 301 QKLELSAATPQPLAGEEMATGRRSERPGVHIQQLKQRRNVSSALKDALVLPVETVEEIIL 360

Query: 361 SQEVV-------RESTKIEEKSH-SSASPKADHPEGKETERVSSDNVPVSTSASESDQEK 420
            QE V       +E T+IEE+SH +S+SPKADH  G ETERVSSDNV VST ASESDQEK
Sbjct: 361 PQEAVIKESTEIKEPTEIEERSHRNSSSPKADHTGGNETERVSSDNVAVSTCASESDQEK 420

Query: 421 ALPKAENLESNKID-VVTPDNSPLPTTASKLEHEKIAISNMMESGDNGEKTKTRKFKKKK 480
           ALPK E LESNKID VVTPDNSPL  TASKLEHE+IA SN MES DNG KTKTRK +KKK
Sbjct: 421 ALPKVEKLESNKIDIVVTPDNSPLIDTASKLEHERIATSNPMESDDNGRKTKTRKSRKKK 480

Query: 481 DINLPRRSSKRLAGLEPELVPKAEAKEVPQASNRNSFTEVSPDAGLTVKADADVHNADKA 540
           D+NLPRRSSKRLAGLEPELVPK +AKEVPQASNRN FTEVSPDAGLTVKADADVHN DKA
Sbjct: 481 DVNLPRRSSKRLAGLEPELVPKVDAKEVPQASNRNIFTEVSPDAGLTVKADADVHNTDKA 540

Query: 541 SQQLNVRLERDHEDHVPNLKDTPLH------------------ENPSNKRKTPLACSLDV 600
           SQQL++R E+D+E H+PN KDT L                   EN SNKRKT L C LD 
Sbjct: 541 SQQLDMRSEKDNEHHIPNHKDTSLRENHKDTSLRENHKDTSLCENSSNKRKT-LTCCLDA 600

Query: 601 PEEKIQKVEI-KKNDGKIEAQLNVPIADFWSDPCLEFAIKTLTGALPVENATATDE---- 632
           PEEKIQ+VE  KK+DGK+EAQL+VPIADFWSDPCLEFAIKTLTGALPVENAT T+E    
Sbjct: 601 PEEKIQRVETEKKDDGKMEAQLDVPIADFWSDPCLEFAIKTLTGALPVENATTTNEPVSS 627

[Close]

BLAST of Lsi09G002880 vs. NCBI nr
Match: gi|659073743|ref|XP_008437228.1| (PREDICTED: uncharacterized protein LOC103482721 isoform X2 [Cucumis melo])

HSP 1 Score: 644.0 bits (1660), Expect = 3.7e-181
Identity = 404/681 (59.32%), Postives = 449/681 (65.93%), Query Frame = 1


Query: 1   MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLETGKSFYYKDDVIGYIKSIQSQKSQPT 60
           MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLETGKSFY                    
Sbjct: 1   MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLETGKSFY-------------------- 60

Query: 61  SRRIKTQLGNSPVQLTVKTNERPEWLPAGWRVESRTRMSGSNVGAVYKCYIDPVTDNRFY 120
                       V   +K+ +  +  P    +++++  S             PV   +  
Sbjct: 61  --------YKDDVLGYIKSTQSQKSQPTSRGIKTQSGNS-------------PVQTVKSN 120

Query: 121 SKPEVVIEHYKDEDLPPGWIKEIKIKERADGIRKDPVWASY-------SCLAPPSLSFQT 180
             PE          LP GW  +++ + R  G     V+  Y          + P +    
Sbjct: 121 EHPEW---------LPAGW--KVESRTRMSGSNVGAVYKCYIDPVTDSRFYSKPEVFRHL 180

Query: 181 KKRKINLCICKNTRGHRKVMHSWSPYCFKHDSSALLSCNLLGR-------SSLSYIPLIG 240
           +  K  LC  K  R       S S    +H     L    +           +   PL  
Sbjct: 181 RTVKNKLCTLKERRTSNGTK-SRSRVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDPLYP 240

Query: 241 YLLQFYIDPKSGYIFRSKKDVFRYLETGEISRHAFKPKEGGDDDQELIRDKKSRPSTVRG 300
             LQFYIDPKSGYIFRSKK+VFRYLETGEISRHAFKPKEGGD++QELI DKKSR STVRG
Sbjct: 241 TFLQFYIDPKSGYIFRSKKEVFRYLETGEISRHAFKPKEGGDEEQELISDKKSR-STVRG 300

Query: 301 QKLEHSAATPQPLAGEEMPTGRRSKPPGVHIQQLKQCRNVSSELKDALVPPVETVEEIVS 360
           QKLE SAATPQPLAGEEM TGRRS+ PGVHIQQLKQ RNVSS LKDALV PVETVEEI+ 
Sbjct: 301 QKLELSAATPQPLAGEEMATGRRSERPGVHIQQLKQRRNVSSALKDALVLPVETVEEIIL 360

Query: 361 SQEVV-------RESTKIEEKSH-SSASPKADHPEGKETERVSSDNVPVSTSASESDQEK 420
            QE V       +E T+IEE+SH +S+SPKADH  G ETERVSSDNV VST ASESDQEK
Sbjct: 361 PQEAVIKESTEIKEPTEIEERSHRNSSSPKADHTGGNETERVSSDNVAVSTCASESDQEK 420

Query: 421 ALPKAENLESNKID-VVTPDNSPLPTTASKLEHEKIAISNMMESGDNGEKTKTRKFKKKK 480
           ALPK E LESNKID VVTPDNSPL  TASKLEHE+IA SN MES DNG KTKTRK +KKK
Sbjct: 421 ALPKVEKLESNKIDIVVTPDNSPLIDTASKLEHERIATSNPMESDDNGRKTKTRKSRKKK 480

Query: 481 DINLPRRSSKRLAGLEPELVPKAEAKEVPQASNRNSFTEVSPDAGLTVKADADVHNADKA 540
           D+NLPRRSSKRLAGLEPELVPK +AKEVPQASNRN FTEVSPDAGLTVKADADVHN DKA
Sbjct: 481 DVNLPRRSSKRLAGLEPELVPKVDAKEVPQASNRNIFTEVSPDAGLTVKADADVHNTDKA 540

Query: 541 SQQLNVRLERDHEDHVPNLKDTPLH------------------ENPSNKRKTPLACSLDV 600
           SQQL++R E+D+E H+PN KDT L                   EN SNKRKT L C LD 
Sbjct: 541 SQQLDMRSEKDNEHHIPNHKDTSLRENHKDTSLRENHKDTSLCENSSNKRKT-LTCCLDA 600

Query: 601 PEEKIQKVEI-KKNDGKIEAQLNVPIADFWSDPCLEFAIKTLTGALPVENATATDE---- 632
           PEEKIQ+VE  KK+DGK+EAQL+VPIADFWSDPCLEFAIKTLTGALPVENAT T+E    
Sbjct: 601 PEEKIQRVETEKKDDGKMEAQLDVPIADFWSDPCLEFAIKTLTGALPVENATTTNEPVSS 626

[Close]

BLAST of Lsi09G002880 vs. NCBI nr
Match: gi|659073745|ref|XP_008437229.1| (PREDICTED: transcriptional regulator ATRX homolog isoform X3 [Cucumis melo])

HSP 1 Score: 578.9 bits (1491), Expect = 1.5e-161
Identity = 334/437 (76.43%), Postives = 358/437 (81.92%), Query Frame = 1


Query: 231 FYIDPKSGYIFRSKKDVFRYLETGEISRHAFKPKEGGDDDQELIRDKKSRPSTVRGQKLE 290
           FYIDPKSGYIFRSKK+VFRYLETGEISRHAFKPKEGGD++QELI DKKSR STVRGQKLE
Sbjct: 186 FYIDPKSGYIFRSKKEVFRYLETGEISRHAFKPKEGGDEEQELISDKKSR-STVRGQKLE 245

Query: 291 HSAATPQPLAGEEMPTGRRSKPPGVHIQQLKQCRNVSSELKDALVPPVETVEEIVSSQEV 350
            SAATPQPLAGEEM TGRRS+ PGVHIQQLKQ RNVSS LKDALV PVETVEEI+  QE 
Sbjct: 246 LSAATPQPLAGEEMATGRRSERPGVHIQQLKQRRNVSSALKDALVLPVETVEEIILPQEA 305

Query: 351 V-------RESTKIEEKSH-SSASPKADHPEGKETERVSSDNVPVSTSASESDQEKALPK 410
           V       +E T+IEE+SH +S+SPKADH  G ETERVSSDNV VST ASESDQEKALPK
Sbjct: 306 VIKESTEIKEPTEIEERSHRNSSSPKADHTGGNETERVSSDNVAVSTCASESDQEKALPK 365

Query: 411 AENLESNKID-VVTPDNSPLPTTASKLEHEKIAISNMMESGDNGEKTKTRKFKKKKDINL 470
            E LESNKID VVTPDNSPL  TASKLEHE+IA SN MES DNG KTKTRK +KKKD+NL
Sbjct: 366 VEKLESNKIDIVVTPDNSPLIDTASKLEHERIATSNPMESDDNGRKTKTRKSRKKKDVNL 425

Query: 471 PRRSSKRLAGLEPELVPKAEAKEVPQASNRNSFTEVSPDAGLTVKADADVHNADKASQQL 530
           PRRSSKRLAGLEPELVPK +AKEVPQASNRN FTEVSPDAGLTVKADADVHN DKASQQL
Sbjct: 426 PRRSSKRLAGLEPELVPKVDAKEVPQASNRNIFTEVSPDAGLTVKADADVHNTDKASQQL 485

Query: 531 NVRLERDHEDHVPNLKDTPLH------------------ENPSNKRKTPLACSLDVPEEK 590
           ++R E+D+E H+PN KDT L                   EN SNKRKT L C LD PEEK
Sbjct: 486 DMRSEKDNEHHIPNHKDTSLRENHKDTSLRENHKDTSLCENSSNKRKT-LTCCLDAPEEK 545

Query: 591 IQKVEI-KKNDGKIEAQLNVPIADFWSDPCLEFAIKTLTGALPVENATATDE-------- 632
           IQ+VE  KK+DGK+EAQL+VPIADFWSDPCLEFAIKTLTGALPVENAT T+E        
Sbjct: 546 IQRVETEKKDDGKMEAQLDVPIADFWSDPCLEFAIKTLTGALPVENATTTNEPVSSTTVD 605

The following BLAST results are available for this feature:

BLAST of Lsi09G002880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi09G002880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKL3_CUCSA	0.0e+00	69.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154900 PE=4 SV=1	[more]
M5WEZ6_PRUPE	1.7e-68	34.70	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027142mg PE=4 S...	[more]
W9R3D9_9ROSA	6.0e-61	33.00	Uncharacterized protein OS=Morus notabilis GN=L484_024324 PE=4 SV=1	[more]
A0A061G5M5_THECC	3.8e-47	33.85	Uncharacterized protein OS=Theobroma cacao GN=TCM_016211 PE=4 SV=1	[more]
A0A067K0Z5_JATCU	1.3e-42	30.16	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20630 PE=4 SV=1	[more]

BLAST of Lsi09G002880 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G63240.1	1.0e-11	32.70	unknown protein	[more]
AT5G52230.1	1.7e-06	24.84	methyl-CPG-binding domain protein 13	[more]
AT3G46580.1	2.2e-06	40.91	methyl-CPG-binding domain protein 5	[more]
AT5G59380.1	3.8e-06	48.94	methyl-CPG-binding domain 6	[more]

BLAST of Lsi09G002880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778699725\|ref\|XP_011654766.1\|	0.0e+00	69.37	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis s...	[more]
gi\|449452356\|ref\|XP_004143925.1\|	0.0e+00	69.46	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucumis s...	[more]
gi\|659073741\|ref\|XP_008437227.1\|	5.7e-182	59.47	PREDICTED: uncharacterized protein LOC103482721 isoform X1 [Cucumis melo]	[more]
gi\|659073743\|ref\|XP_008437228.1\|	3.7e-181	59.32	PREDICTED: uncharacterized protein LOC103482721 isoform X2 [Cucumis melo]	[more]
gi\|659073745\|ref\|XP_008437229.1\|	1.5e-161	76.43	PREDICTED: transcriptional regulator ATRX homolog isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR016177	DNA-bd_dom_sf
IPR001739	Methyl_CpG_DNA-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G002880.1	Lsi09G002880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001739	Methyl-CpG DNA binding	GENE3D	G3DSA:3.30.890.10		coord: 231..276 score: 1.7E-4coord: 83..125 score: 2.
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 79..126 score: 1.
IPR001739	Methyl-CpG DNA binding	PROFILE	PS50982	MBD	coord: 76..150 score: 9.082coord: 182..268 score: 5.862coord: 1..69 score: 8
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 81..126 score: 5.23E-8coord: 8..54 score: 8.1
None	No IPR available	PANTHER	PTHR34067	FAMILY NOT NAMED	coord: 231..292 score: 1.7E-51coord: 366..613 score: 1.7E-51coord: 7..156 score: 1.7
None	No IPR available	PANTHER	PTHR34067:SF1	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 13	coord: 366..613 score: 1.7E-51coord: 231..292 score: 1.7E-51coord: 7..156 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G002880	Csa5G154900	Cucumber (Chinese Long) v2	culsiB322
Lsi09G002880	CSPI05G05700	Wild cucumber (PI 183967)	cpilsiB322
Lsi09G002880	Cucsa.302890	Cucumber (Gy14) v1	cgylsiB487
Lsi09G002880	CmaCh18G012410	Cucurbita maxima (Rimu)	cmalsiB365
Lsi09G002880	CmaCh02G014750	Cucurbita maxima (Rimu)	cmalsiB530
Lsi09G002880	CmoCh18G012640	Cucurbita moschata (Rifu)	cmolsiB353
Lsi09G002880	CmoCh02G015110	Cucurbita moschata (Rifu)	cmolsiB516
Lsi09G002880	Cla011473	Watermelon (97103) v1	lsiwmB027
Lsi09G002880	MELO3C005647	Melon (DHL92) v3.5.1	lsimeB012
Lsi09G002880	ClCG01G002970	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G002880	MELO3C005647.2	Melon (DHL92) v3.6.1	lsimedB012
Lsi09G002880	Cla97C01G003060	Watermelon (97103) v2	lsiwmbB007
Lsi09G002880	Bhi12G000218	Wax gourd	lsiwgoB022
Lsi09G002880	Cp4.1LG05g03710	Cucurbita pepo (Zucchini)	cpelsiB582
Lsi09G002880	CsGy5G002990	Cucumber (Gy14) v2	cgyblsiB294
Lsi09G002880	Carg02512	Silver-seed gourd	carlsiB836
Lsi09G002880	CsaV3_5G003080	Cucumber (Chinese Long) v3	cuclsiB345

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G002880	Cucumber (Gy14) v2	cgyblsiB141
Lsi09G002880	Melon (DHL92) v3.6.1	lsimedB036
Lsi09G002880	Silver-seed gourd	carlsiB851
Lsi09G002880	Cucumber (Chinese Long) v3	cuclsiB171
Lsi09G002880	Watermelon (97103) v2	lsiwmbB022
Lsi09G002880	Wax gourd	lsiwgoB044
Lsi09G002880	Bottle gourd (USVL1VR-Ls)	lsilsiB008
Lsi09G002880	Cucurbita maxima (Rimu)	cmalsiB267
Lsi09G002880	Cucurbita maxima (Rimu)	cmalsiB302
Lsi09G002880	Cucurbita moschata (Rifu)	cmolsiB255
Lsi09G002880	Cucurbita pepo (Zucchini)	cpelsiB000
Lsi09G002880	Cucurbita pepo (Zucchini)	cpelsiB131
Lsi09G002880	Wild cucumber (PI 183967)	cpilsiB155
Lsi09G002880	Cucumber (Chinese Long) v2	culsiB156
Lsi09G002880	Melon (DHL92) v3.5.1	lsimeB036
Lsi09G002880	Watermelon (Charleston Gray)	lsiwcgB023
Lsi09G002880	Watermelon (97103) v1	lsiwmB024