Cp4.1LG08g05340 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g05340
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionCa2+-binding protein 1
LocationCp4.1LG08 : 964052 .. 964354 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTCGCTGATATGAATCGCGACGGCTTCGTCGAGTACGACGAGTTTGAGCGCGTGTTGTCCGGCGGAAGGAAGAAGTGGACGGGGATTATGGAGGAGGTCTTCAAGTTGATGGACGTGGACGTGGACGGAGACGGACGGTTGAGTGTCGCCGATTTGAAGAGCTACATGCATTTCGCCGGATTTTCGATCTCCGATGAGGAGGTTGTAGCGATGATTAGATTCGGTGGCGGAGATGAATCGGACGGCGTAACTTATGACGGTTTGCTGAAGATTTTGGCTGTTGATAAGTTCTATTAG

mRNA sequence

ATGGCCGTCGCTGATATGAATCGCGACGGCTTCGTCGAGTACGACGAGTTTGAGCGCGTGTTGTCCGGCGGAAGGAAGAAGTGGACGGGGATTATGGAGGAGGTCTTCAAGTTGATGGACGTGGACGTGGACGGAGACGGACGGTTGAGTGTCGCCGATTTGAAGAGCTACATGCATTTCGCCGGATTTTCGATCTCCGATGAGGAGGTTGTAGCGATGATTAGATTCGGTGGCGGAGATGAATCGGACGGCGTAACTTATGACGGTTTGCTGAAGATTTTGGCTGTTGATAAGTTCTATTAG

Coding sequence (CDS)

ATGGCCGTCGCTGATATGAATCGCGACGGCTTCGTCGAGTACGACGAGTTTGAGCGCGTGTTGTCCGGCGGAAGGAAGAAGTGGACGGGGATTATGGAGGAGGTCTTCAAGTTGATGGACGTGGACGTGGACGGAGACGGACGGTTGAGTGTCGCCGATTTGAAGAGCTACATGCATTTCGCCGGATTTTCGATCTCCGATGAGGAGGTTGTAGCGATGATTAGATTCGGTGGCGGAGATGAATCGGACGGCGTAACTTATGACGGTTTGCTGAAGATTTTGGCTGTTGATAAGTTCTATTAG

Protein sequence

MAVADMNRDGFVEYDEFERVLSGGRKKWTGIMEEVFKLMDVDVDGDGRLSVADLKSYMHFAGFSISDEEVVAMIRFGGGDESDGVTYDGLLKILAVDKFY
Homology
[Close]
BLAST of Cp4.1LG08g05340 vs. TrEMBL
Match: A0A0A0L828_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G167380 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.9e-36
Identity = 79/100 (79.00%), Postives = 86/100 (86.00%), Query Frame = 1 

Query: 1   MAVADMNRDGFVEYDEFERVLSGGRKKWTGIMEEVFKLMDVDVDGDGRLSVADLKSYMHF 60
           +A AD+NR+G VEY+EFERVLSGGR++ TGIMEEVFK MD D  GDGRLS  DLKSYMH 
Sbjct: 79  IAAADLNRNGVVEYEEFERVLSGGRRRSTGIMEEVFKTMDKD--GDGRLSHGDLKSYMHL 138

Query: 61  AGFSISDEEVVAMIRFGGGDESDGVTYDGLLKILAVDKFY 101
           AGFSISDEEV AMIRFGGGDESDGV Y+GLLKILAVD  Y
Sbjct: 139 AGFSISDEEVTAMIRFGGGDESDGVCYEGLLKILAVDNMY 176

[Close]
BLAST of Cp4.1LG08g05340 vs. TrEMBL
Match: A0A061EP14_THECC (Ca2+-binding protein 1 OS=Theobroma cacao GN=TCM_021387 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-27
Identity = 66/105 (62.86%), Postives = 84/105 (80.00%), Query Frame = 1 

Query: 1   MAVADMNRDGFVEYDEFERVLSGGRKKWT--------GIMEEVFKLMDVDVDGDGRLSVA 60
           +++AD N+DGFVEY+EFERVL G  K+ +        G+ME+VFK+MD D  GDGRLS  
Sbjct: 63  ISLADSNKDGFVEYEEFERVLGGCGKRSSSASAAGGFGVMEDVFKVMDKD--GDGRLSHE 122

Query: 61  DLKSYMHFAGFSISDEEVVAMIRFGGGDESDGVTYDGLLKILAVD 98
           DLKSYM++AGFS SDE++ AMIR GGGDE++GV++DGLLKILAVD
Sbjct: 123 DLKSYMNWAGFSASDEDIKAMIRLGGGDENEGVSFDGLLKILAVD 165

[Close]
BLAST of Cp4.1LG08g05340 vs. TrEMBL
Match: A0A067K6N7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19015 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-26
Identity = 61/100 (61.00%), Postives = 81/100 (81.00%), Query Frame = 1 

Query: 1   MAVADMNRDGFVEYDEFERVLSGG---RKKWTGIMEEVFKLMDVDVDGDGRLSVADLKSY 60
           M++AD N+DGFVEY+EFERVL+G    +K + G+ME+VFK+MD D  GDGRLS  DLKSY
Sbjct: 62  MSLADFNKDGFVEYEEFERVLNGNGKRKKTYNGVMEDVFKVMDKD--GDGRLSHEDLKSY 121

Query: 61  MHFAGFSISDEEVVAMIRFGGGDESDGVTYDGLLKILAVD 98
           M +AGF ++DE+V AMI+ GGGD+ D V++D LLKIL++D
Sbjct: 122 MQWAGFDLADEDVKAMIKLGGGDDKDSVSFDDLLKILSLD 159

[Close]
BLAST of Cp4.1LG08g05340 vs. TrEMBL
Match: A0A0D2T0I1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G257800 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.5e-26
Identity = 68/101 (67.33%), Postives = 82/101 (81.19%), Query Frame = 1 

Query: 1   MAVADMNRDGFVEYDEFERVLSG--GRKKWT--GIMEEVFKLMDVDVDGDGRLSVADLKS 60
           +++AD+N DGFVEYDEFERVL G   RKK +  G+ME+VFK+MD D  GDGRLS  DLKS
Sbjct: 64  ISLADLNSDGFVEYDEFERVLGGYNNRKKVSSYGVMEDVFKVMDKD--GDGRLSHEDLKS 123

Query: 61  YMHFAGFSISDEEVVAMIRFGGGDESDGVTYDGLLKILAVD 98
           YM++AGFS SDE++ AMIR GGGD+  GV +DGLLKILAVD
Sbjct: 124 YMNWAGFSASDEDIKAMIRLGGGDDK-GVCFDGLLKILAVD 161

[Close]
BLAST of Cp4.1LG08g05340 vs. TrEMBL
Match: A5B390_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037818 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.8e-26
Identity = 63/103 (61.17%), Postives = 79/103 (76.70%), Query Frame = 1 

Query: 1   MAVADMNRDGFVEYDEFERVLSGGRKKWT------GIMEEVFKLMDVDVDGDGRLSVADL 60
           M+VAD N+DGFVEYDEFERVL   R          G+ME+VFK+MD D  GDG++ + DL
Sbjct: 60  MSVADSNKDGFVEYDEFERVLGCRRSPRNKGHXVAGVMEDVFKVMDRD--GDGKVGLEDL 119

Query: 61  KSYMHFAGFSISDEEVVAMIRFGGGDESDGVTYDGLLKILAVD 98
           KSYM++AGFS ++E++ AMI+ GGGDE  GV+YDGLLKILAVD
Sbjct: 120 KSYMNWAGFSATEEDIKAMIKLGGGDEDSGVSYDGLLKILAVD 160

[Close]
BLAST of Cp4.1LG08g05340 vs. TAIR10
Match: AT5G49480.1 (AT5G49480.1 Ca2+-binding protein 1)

HSP 1 Score: 108.6 bits (270), Expect = 2.2e-24
Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = 1 

Query: 1   MAVADMNRDGFVEYDEFERVLS------GGRKKWTGIMEEVFKLMDVDVDGDGRLSVADL 60
           ++VAD N+DGFVE+DEFE+VL        G     G+M++VFK+MD D  GDGRLS  DL
Sbjct: 61  ISVADANKDGFVEFDEFEKVLETTPFSRSGNGGDDGLMKDVFKVMDKD--GDGRLSYGDL 120

Query: 61  KSYMHFAGFSISDEEVVAMIRFGGGDESDGVTYDGLLKI 94
           KSYM  AG +++D+E+ +MIR  GGD +DGV++DGLLKI
Sbjct: 121 KSYMDSAGLAVTDDEIKSMIRLAGGDLNDGVSFDGLLKI 157

[Close]
BLAST of Cp4.1LG08g05340 vs. NCBI nr
Match: gi|659076972|ref|XP_008438964.1| (PREDICTED: calmodulin-related protein [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 3.1e-36
Identity = 79/100 (79.00%), Postives = 87/100 (87.00%), Query Frame = 1 

Query: 1   MAVADMNRDGFVEYDEFERVLSGGRKKWTGIMEEVFKLMDVDVDGDGRLSVADLKSYMHF 60
           +A AD+NR+G VEY+EFERVLSGGR++ TGIMEEVFK MD D  GDGRLS ADLKSYMH 
Sbjct: 57  IAAADLNRNGVVEYEEFERVLSGGRRRSTGIMEEVFKTMDKD--GDGRLSHADLKSYMHL 116

Query: 61  AGFSISDEEVVAMIRFGGGDESDGVTYDGLLKILAVDKFY 101
           AGFSISDEEV AMIRFGGGDESDGV Y+GLLKILA+D  Y
Sbjct: 117 AGFSISDEEVTAMIRFGGGDESDGVCYEGLLKILAIDNMY 154

[Close]
BLAST of Cp4.1LG08g05340 vs. NCBI nr
Match: gi|449432924|ref|XP_004134248.1| (PREDICTED: calmodulin-A [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 7.0e-36
Identity = 79/100 (79.00%), Postives = 86/100 (86.00%), Query Frame = 1 

Query: 1   MAVADMNRDGFVEYDEFERVLSGGRKKWTGIMEEVFKLMDVDVDGDGRLSVADLKSYMHF 60
           +A AD+NR+G VEY+EFERVLSGGR++ TGIMEEVFK MD D  GDGRLS  DLKSYMH 
Sbjct: 58  IAAADLNRNGVVEYEEFERVLSGGRRRSTGIMEEVFKTMDKD--GDGRLSHGDLKSYMHL 117

Query: 61  AGFSISDEEVVAMIRFGGGDESDGVTYDGLLKILAVDKFY 101
           AGFSISDEEV AMIRFGGGDESDGV Y+GLLKILAVD  Y
Sbjct: 118 AGFSISDEEVTAMIRFGGGDESDGVCYEGLLKILAVDNMY 155

[Close]
BLAST of Cp4.1LG08g05340 vs. NCBI nr
Match: gi|700202041|gb|KGN57174.1| (hypothetical protein Csa_3G167380 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 7.0e-36
Identity = 79/100 (79.00%), Postives = 86/100 (86.00%), Query Frame = 1 

Query: 1   MAVADMNRDGFVEYDEFERVLSGGRKKWTGIMEEVFKLMDVDVDGDGRLSVADLKSYMHF 60
           +A AD+NR+G VEY+EFERVLSGGR++ TGIMEEVFK MD D  GDGRLS  DLKSYMH 
Sbjct: 79  IAAADLNRNGVVEYEEFERVLSGGRRRSTGIMEEVFKTMDKD--GDGRLSHGDLKSYMHL 138

Query: 61  AGFSISDEEVVAMIRFGGGDESDGVTYDGLLKILAVDKFY 101
           AGFSISDEEV AMIRFGGGDESDGV Y+GLLKILAVD  Y
Sbjct: 139 AGFSISDEEVTAMIRFGGGDESDGVCYEGLLKILAVDNMY 176

[Close]
BLAST of Cp4.1LG08g05340 vs. NCBI nr
Match: gi|590662006|ref|XP_007035829.1| (Ca2+-binding protein 1 [Theobroma cacao])

HSP 1 Score: 129.4 bits (324), Expect = 3.5e-27
Identity = 66/105 (62.86%), Postives = 84/105 (80.00%), Query Frame = 1 

Query: 1   MAVADMNRDGFVEYDEFERVLSGGRKKWT--------GIMEEVFKLMDVDVDGDGRLSVA 60
           +++AD N+DGFVEY+EFERVL G  K+ +        G+ME+VFK+MD D  GDGRLS  
Sbjct: 63  ISLADSNKDGFVEYEEFERVLGGCGKRSSSASAAGGFGVMEDVFKVMDKD--GDGRLSHE 122

Query: 61  DLKSYMHFAGFSISDEEVVAMIRFGGGDESDGVTYDGLLKILAVD 98
           DLKSYM++AGFS SDE++ AMIR GGGDE++GV++DGLLKILAVD
Sbjct: 123 DLKSYMNWAGFSASDEDIKAMIRLGGGDENEGVSFDGLLKILAVD 165

[Close]
BLAST of Cp4.1LG08g05340 vs. NCBI nr
Match: gi|657996134|ref|XP_008390429.1| (PREDICTED: calmodulin [Malus domestica])

HSP 1 Score: 128.3 bits (321), Expect = 7.7e-27
Identity = 64/99 (64.65%), Postives = 80/99 (80.81%), Query Frame = 1 

Query: 1   MAVADMNRDGFVEYDEFERVLSGGR-KKWTGIMEEVFKLMDVDVDGDGRLSVADLKSYMH 60
           M+ AD + DGFV+YDEFERVL+GGR  + +G+ME+VFK+MD D  GDG+LS  DLKSYM 
Sbjct: 62  MSAADSDNDGFVQYDEFERVLAGGRWPRSSGVMEDVFKVMDKD--GDGKLSHEDLKSYMS 121

Query: 61  FAGFSISDEEVVAMIRFGGGDESDGVTYDGLLKILAVDK 99
             GF+ SDE++ AMI+ GGGDE+ GVTY GLLKILAVD+
Sbjct: 122 STGFAASDEDIKAMIKLGGGDENQGVTYAGLLKILAVDQ 158

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g05340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG08g05340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L828_CUCSA4.9e-3679.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G167380 PE=4 SV=1[more]
A0A061EP14_THECC2.4e-2762.86Ca2+-binding protein 1 OS=Theobroma cacao GN=TCM_021387 PE=4 SV=1[more]
A0A067K6N7_JATCU1.6e-2661.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19015 PE=4 SV=1[more]
A0A0D2T0I1_GOSRA3.5e-2667.33Uncharacterized protein OS=Gossypium raimondii GN=B456_006G257800 PE=4 SV=1[more]
A5B390_VITVI7.8e-2661.17Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037818 PE=4 SV=1[more]
BLAST of Cp4.1LG08g05340 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G49480.12.2e-2455.56 Ca2+-binding protein 1[more]
BLAST of Cp4.1LG08g05340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076972|ref|XP_008438964.1|3.1e-3679.00PREDICTED: calmodulin-related protein [Cucumis melo][more]
gi|449432924|ref|XP_004134248.1|7.0e-3679.00PREDICTED: calmodulin-A [Cucumis sativus][more]
gi|700202041|gb|KGN57174.1|7.0e-3679.00hypothetical protein Csa_3G167380 [Cucumis sativus][more]
gi|590662006|ref|XP_007035829.1|3.5e-2762.86Ca2+-binding protein 1 [Theobroma cacao][more]
gi|657996134|ref|XP_008390429.1|7.7e-2764.65PREDICTED: calmodulin [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042538 hyperosmotic salinity response
cellular_component GO:0005829 cytosol
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g05340.1Cp4.1LG08g05340.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13202EF-hand_5coord: 41..56
score: 0.013coord: 3..21
score: 1.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 40..64
score: 9.185coord: 1..27
score:
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 2..94
score: 1.3
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 1..95
score: 1.87
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 5..17
score: -coord: 42..54
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 1..97
score: 1.6
NoneNo IPR availablePANTHERPTHR10891:SF629SUBFAMILY NOT NAMEDcoord: 1..97
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g05340Cucsa.252480Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g05340CmaCh14G015850Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g05340CmaCh06G015660Cucurbita maxima (Rimu)cmacpeB853
Cp4.1LG08g05340CmoCh06G015620Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g05340Cla021803Watermelon (97103) v1cpewmB845
Cp4.1LG08g05340Csa3G167380Cucumber (Chinese Long) v2cpecuB859
Cp4.1LG08g05340MELO3C006721Melon (DHL92) v3.5.1cpemeB813
Cp4.1LG08g05340ClCG05G006630Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g05340CSPI03G15050Wild cucumber (PI 183967)cpecpiB861
Cp4.1LG08g05340Lsi05G014160Bottle gourd (USVL1VR-Ls)cpelsiB715
Cp4.1LG08g05340MELO3C006721.2Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g05340CsaV3_3G015240Cucumber (Chinese Long) v3cpecucB1056
Cp4.1LG08g05340Bhi01G000788Wax gourdcpewgoB1110
Cp4.1LG08g05340CsGy3G015180Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g05340Carg23731Silver-seed gourdcarcpeB1321
Cp4.1LG08g05340Carg19616Silver-seed gourdcarcpeB0396
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g05340Cp4.1LG03g11850Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g05340Silver-seed gourdcarcpeB0109
Cp4.1LG08g05340Silver-seed gourdcarcpeB0987
Cp4.1LG08g05340Wax gourdcpewgoB1102
Cp4.1LG08g05340Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG08g05340Cucurbita pepo (Zucchini)cpecpeB343
Cp4.1LG08g05340Cucurbita maxima (Rimu)cmacpeB412
Cp4.1LG08g05340Cucurbita maxima (Rimu)cmacpeB931
Cp4.1LG08g05340Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g05340Cucurbita moschata (Rifu)cmocpeB373
Cp4.1LG08g05340Cucurbita moschata (Rifu)cmocpeB866
Cp4.1LG08g05340Bottle gourd (USVL1VR-Ls)cpelsiB697
Cp4.1LG08g05340Watermelon (Charleston Gray)cpewcgB788
Cp4.1LG08g05340Watermelon (97103) v1cpewmB853
Cp4.1LG08g05340Melon (DHL92) v3.5.1cpemeB793