CmaCh06G015660 (gene) Cucurbita maxima (Rimu)

NameCmaCh06G015660
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCa2+-binding protein 1
LocationCma_Chr06 : 9811453 .. 9811974 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCCCTTCCGGTACCTTCACCGCTCGCTCTGACATCGCCGCTGATTTCCTCCAGGCATTTGAGGCACTAGAGCCGACCGCGACGGAAGGATTAGTCCTGACGATCTTCGCAGATTCTACAGCGCCGACGCAGATGAAGACGCTATAGGCTCCATGATGGTCGTCGCTGATATGAATCGCGACGGCTCCGTCGAGTACGACGAGTTCGAGCGCGTGTTGTCCGGCGGAAGGAAGAACTGGACGGGGATTATGGAGGAGGTCTTCAAGTTGATGAACGAGGACGGTGACGGACGGTTGAGTGTCGCCGATTTGAAGAGCTACATGCATTTCGCCGGATTTTCGATCTCCGATGAGGAGGTTGTAACGTTGATTAGATTCGGTGGCGGAGATGAATCGGACGGCGTAACTTATGACGGTTTGCTGAAGATTTTGGCTGTTGATAAGTTCTGGCGGAGATGAATCGGACGGCGTAACTTATGACGGTTTGCTGAAGATTTTGGCTGTTGATAAGTTCTATTAG

mRNA sequence

ATGTGCCCTTCCGGCACTAGAGCCGACCGCGACGGAAGGATTAGTCCTGACGATCTTCGCAGATTCTACAGCGCCGACGCAGATGAAGACGCTATAGGCTCCATGATGGTCGTCGCTGATATGAATCGCGACGGCTCCGTCGAGTACGACGAGTTCGAGCGCGTGTTGTCCGGCGGAAGGAAGAACTGGACGGGGATTATGGAGGAGGTCTTCAAGTTGATGAACGAGGACGGTGACGGACGGTTGAGTGTCGCCGATTTGAAGAGCTACATGCATTTCGCCGGATTTTCGATCTCCGATGAGGAGGTTGTAACTTCTGGCGGAGATGAATCGGACGGCGTAACTTATGACGGTTTGCTGAAGATTTTGGCTGTTGATAAGTTCTATTAG

Coding sequence (CDS)

ATGTGCCCTTCCGGCACTAGAGCCGACCGCGACGGAAGGATTAGTCCTGACGATCTTCGCAGATTCTACAGCGCCGACGCAGATGAAGACGCTATAGGCTCCATGATGGTCGTCGCTGATATGAATCGCGACGGCTCCGTCGAGTACGACGAGTTCGAGCGCGTGTTGTCCGGCGGAAGGAAGAACTGGACGGGGATTATGGAGGAGGTCTTCAAGTTGATGAACGAGGACGGTGACGGACGGTTGAGTGTCGCCGATTTGAAGAGCTACATGCATTTCGCCGGATTTTCGATCTCCGATGAGGAGGTTGTAACTTCTGGCGGAGATGAATCGGACGGCGTAACTTATGACGGTTTGCTGAAGATTTTGGCTGTTGATAAGTTCTATTAG

Protein sequence

MCPSGTRADRDGRISPDDLRRFYSADADEDAIGSMMVVADMNRDGSVEYDEFERVLSGGRKNWTGIMEEVFKLMNEDGDGRLSVADLKSYMHFAGFSISDEEVVTSGGDESDGVTYDGLLKILAVDKFY
BLAST of CmaCh06G015660 vs. Swiss-Prot
Match: CALM_CANAX (Calmodulin OS=Candida albicans GN=CMD1 PE=3 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 9.7e-06
Identity = 30/100 (30.00%), Postives = 54/100 (54.00%), Query Frame = 1

Query: 9   DRDGRISPDDL---RRFYSADADEDAIGSMMVVADMNRDGSVEYDEFERVLSGGRKNWTG 68
           D DG+I+  +L    R    +  E  +  M+   D+N DGS+++ EF  +++   K+   
Sbjct: 23  DSDGKITTKELGTVMRSLGQNPSESELTDMINEVDVNSDGSIDFPEFLTMMARKMKDTDS 82

Query: 69  IME--EVFKLMNEDGDGRLSVADLKSYMHFAGFSISDEEV 104
             E  E FK+ + +GDG++S A+L+  +   G  +SD +V
Sbjct: 83  EAEIAEAFKVFDRNGDGKISAAELRHLLTSIGEKLSDADV 122

BLAST of CmaCh06G015660 vs. TrEMBL
Match: A0A0A0L828_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G167380 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.4e-43
Identity = 100/155 (64.52%), Postives = 110/155 (70.97%), Query Frame = 1

Query: 1   MCPSGTR--------------------ADRDGRISPDDLRRFYSA--DADEDAIGSMMVV 60
           MCPSGT                     AD DG+IS DDLR+FYS   DADEDAIGSM+  
Sbjct: 22  MCPSGTASDDRSDVASVGFRQAFEVLDADHDGKISRDDLRKFYSGGGDADEDAIGSMIAA 81

Query: 61  ADMNRDGSVEYDEFERVLSGGRKNWTGIMEEVFKLMNEDGDGRLSVADLKSYMHFAGFSI 120
           AD+NR+G VEY+EFERVLSGGR+  TGIMEEVFK M++DGDGRLS  DLKSYMH AGFSI
Sbjct: 82  ADLNRNGVVEYEEFERVLSGGRRRSTGIMEEVFKTMDKDGDGRLSHGDLKSYMHLAGFSI 141

Query: 121 SDEEVVT----SGGDESDGVTYDGLLKILAVDKFY 130
           SDEEV       GGDESDGV Y+GLLKILAVD  Y
Sbjct: 142 SDEEVTAMIRFGGGDESDGVCYEGLLKILAVDNMY 176

BLAST of CmaCh06G015660 vs. TrEMBL
Match: A0A067K6N7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19015 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-32
Identity = 76/130 (58.46%), Postives = 98/130 (75.38%), Query Frame = 1

Query: 8   ADRDGRISPDDLRRFY----SADADEDAIGSMMVVADMNRDGSVEYDEFERVLSGG---R 67
           ADRDG+IS DDLR FY    S  AD+D IGSMM +AD N+DG VEY+EFERVL+G    +
Sbjct: 30  ADRDGKISRDDLRSFYTGFLSGGADDDVIGSMMSLADFNKDGFVEYEEFERVLNGNGKRK 89

Query: 68  KNWTGIMEEVFKLMNEDGDGRLSVADLKSYMHFAGFSISDEEVVT----SGGDESDGVTY 127
           K + G+ME+VFK+M++DGDGRLS  DLKSYM +AGF ++DE+V       GGD+ D V++
Sbjct: 90  KTYNGVMEDVFKVMDKDGDGRLSHEDLKSYMQWAGFDLADEDVKAMIKLGGGDDKDSVSF 149

BLAST of CmaCh06G015660 vs. TrEMBL
Match: M5Y5J5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012594mg PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.2e-32
Identity = 77/130 (59.23%), Postives = 98/130 (75.38%), Query Frame = 1

Query: 8   ADRDGRISPDDLRRFY----SADADEDAIGSMMVVADMNRDGSVEYDEFERVLSGG---R 67
           +DRDG+IS DDLR FY    S+ ADE+ IGSMM VAD N+DG V+YDEFERVL GG   R
Sbjct: 31  SDRDGKISKDDLRAFYAGFSSSGADENLIGSMMSVADSNKDGFVQYDEFERVLGGGGGAR 90

Query: 68  KNWTGIMEEVFKLMNEDGDGRLSVADLKSYMHFAGFSISDEE----VVTSGGDESDGVTY 127
            +W G+ME+ FK+M++DGDG+L   DLKSYM  AGF+ +DE+    ++  GGD++ GV+Y
Sbjct: 91  SSW-GVMEDAFKVMDKDGDGKLGHEDLKSYMSAAGFAATDEDIKAMIILGGGDDNQGVSY 150

BLAST of CmaCh06G015660 vs. TrEMBL
Match: B9HX36_POPTR (Hypersensitive reaction associated Ca2+-binding family protein OS=Populus trichocarpa GN=POPTR_0010s15680g PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 9.4e-32
Identity = 78/139 (56.12%), Postives = 97/139 (69.78%), Query Frame = 1

Query: 8   ADRDGRISPDDLRRFYSA----DADEDAIGSMMVVADMNRDGSVEYDEFERVLSGGRKN- 67
           AD DG+IS DDLR FY+     DAD+D IGSMM VAD N+DG VEYDEFERVL G  +N 
Sbjct: 30  ADHDGKISKDDLRMFYAGFSRNDADDDVIGSMMSVADFNKDGFVEYDEFERVLDGFSENK 89

Query: 68  --------WTGIMEEVFKLMNEDGDGRLSVADLKSYMHFAGFSISDEEVVT-------SG 127
                    +G+ME+VFK+M++DGDG+LSV DLKSYM +AGF   D+++         +G
Sbjct: 90  ETSISTRSTSGVMEDVFKVMDKDGDGKLSVEDLKSYMQWAGFDAPDDDIKAMIKLAGCAG 149

BLAST of CmaCh06G015660 vs. TrEMBL
Match: B9HIM5_POPTR (Hypersensitive reaction associated Ca2+-binding family protein OS=Populus trichocarpa GN=POPTR_0008s10360g PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.6e-31
Identity = 78/139 (56.12%), Postives = 96/139 (69.06%), Query Frame = 1

Query: 8   ADRDGRISPDDLRRFY----SADADEDAIGSMMVVADMNRDGSVEYDEFERVLSGGR--- 67
           AD DG+IS DDLR FY    S  AD+D IGSMM VAD N+DG VEYDEFERVL G     
Sbjct: 30  ADHDGKISKDDLRMFYAGFSSNGADDDFIGSMMSVADFNKDGFVEYDEFERVLDGASEKK 89

Query: 68  ------KNWTGIMEEVFKLMNEDGDGRLSVADLKSYMHFAGFSISDEEVVT-------SG 127
                 ++ +G+ME+VFK+M++DGDG+LSV DLKSYM +AGF  SD+++         SG
Sbjct: 90  KSSSSTRSSSGVMEDVFKVMDKDGDGKLSVDDLKSYMQWAGFDASDDDIKAMIKLACYSG 149

BLAST of CmaCh06G015660 vs. TAIR10
Match: AT5G49480.1 (AT5G49480.1 Ca2+-binding protein 1)

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-28
Identity = 66/129 (51.16%), Postives = 90/129 (69.77%), Query Frame = 1

Query: 9   DRDGRISPDDLRRFYSA-----DADEDAIGSMMVVADMNRDGSVEYDEFERVLS------ 68
           D DG+IS DDLR FY+      + DE  IG+M+ VAD N+DG VE+DEFE+VL       
Sbjct: 29  DHDGKISSDDLRAFYAGIPSGENNDETMIGTMISVADANKDGFVEFDEFEKVLETTPFSR 88

Query: 69  GGRKNWTGIMEEVFKLMNEDGDGRLSVADLKSYMHFAGFSISDEEVVT----SGGDESDG 123
            G     G+M++VFK+M++DGDGRLS  DLKSYM  AG +++D+E+ +    +GGD +DG
Sbjct: 89  SGNGGDDGLMKDVFKVMDKDGDGRLSYGDLKSYMDSAGLAVTDDEIKSMIRLAGGDLNDG 148

BLAST of CmaCh06G015660 vs. NCBI nr
Match: gi|659076972|ref|XP_008438964.1| (PREDICTED: calmodulin-related protein [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 6.9e-44
Identity = 100/154 (64.94%), Postives = 112/154 (72.73%), Query Frame = 1

Query: 1   MCPSGTRADR-------------------DGRISPDDLRRFYSA--DADEDAIGSMMVVA 60
           MCPSGT +DR                   DG+IS DDLR+FYS   DADEDAIGSM+  A
Sbjct: 1   MCPSGTASDRSDVASVGFRQAFEVLDADHDGKISRDDLRKFYSGGGDADEDAIGSMIAAA 60

Query: 61  DMNRDGSVEYDEFERVLSGGRKNWTGIMEEVFKLMNEDGDGRLSVADLKSYMHFAGFSIS 120
           D+NR+G VEY+EFERVLSGGR+  TGIMEEVFK M++DGDGRLS ADLKSYMH AGFSIS
Sbjct: 61  DLNRNGVVEYEEFERVLSGGRRRSTGIMEEVFKTMDKDGDGRLSHADLKSYMHLAGFSIS 120

Query: 121 DEEVVT----SGGDESDGVTYDGLLKILAVDKFY 130
           DEEV       GGDESDGV Y+GLLKILA+D  Y
Sbjct: 121 DEEVTAMIRFGGGDESDGVCYEGLLKILAIDNMY 154

BLAST of CmaCh06G015660 vs. NCBI nr
Match: gi|449432924|ref|XP_004134248.1| (PREDICTED: calmodulin-A [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 3.4e-43
Identity = 100/155 (64.52%), Postives = 110/155 (70.97%), Query Frame = 1

Query: 1   MCPSGTR--------------------ADRDGRISPDDLRRFYSA--DADEDAIGSMMVV 60
           MCPSGT                     AD DG+IS DDLR+FYS   DADEDAIGSM+  
Sbjct: 1   MCPSGTASDDRSDVASVGFRQAFEVLDADHDGKISRDDLRKFYSGGGDADEDAIGSMIAA 60

Query: 61  ADMNRDGSVEYDEFERVLSGGRKNWTGIMEEVFKLMNEDGDGRLSVADLKSYMHFAGFSI 120
           AD+NR+G VEY+EFERVLSGGR+  TGIMEEVFK M++DGDGRLS  DLKSYMH AGFSI
Sbjct: 61  ADLNRNGVVEYEEFERVLSGGRRRSTGIMEEVFKTMDKDGDGRLSHGDLKSYMHLAGFSI 120

Query: 121 SDEEVVT----SGGDESDGVTYDGLLKILAVDKFY 130
           SDEEV       GGDESDGV Y+GLLKILAVD  Y
Sbjct: 121 SDEEVTAMIRFGGGDESDGVCYEGLLKILAVDNMY 155

BLAST of CmaCh06G015660 vs. NCBI nr
Match: gi|700202041|gb|KGN57174.1| (hypothetical protein Csa_3G167380 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 3.4e-43
Identity = 100/155 (64.52%), Postives = 110/155 (70.97%), Query Frame = 1

Query: 1   MCPSGTR--------------------ADRDGRISPDDLRRFYSA--DADEDAIGSMMVV 60
           MCPSGT                     AD DG+IS DDLR+FYS   DADEDAIGSM+  
Sbjct: 22  MCPSGTASDDRSDVASVGFRQAFEVLDADHDGKISRDDLRKFYSGGGDADEDAIGSMIAA 81

Query: 61  ADMNRDGSVEYDEFERVLSGGRKNWTGIMEEVFKLMNEDGDGRLSVADLKSYMHFAGFSI 120
           AD+NR+G VEY+EFERVLSGGR+  TGIMEEVFK M++DGDGRLS  DLKSYMH AGFSI
Sbjct: 82  ADLNRNGVVEYEEFERVLSGGRRRSTGIMEEVFKTMDKDGDGRLSHGDLKSYMHLAGFSI 141

Query: 121 SDEEVVT----SGGDESDGVTYDGLLKILAVDKFY 130
           SDEEV       GGDESDGV Y+GLLKILAVD  Y
Sbjct: 142 SDEEVTAMIRFGGGDESDGVCYEGLLKILAVDNMY 176

BLAST of CmaCh06G015660 vs. NCBI nr
Match: gi|802704833|ref|XP_012084098.1| (PREDICTED: calmodulin [Jatropha curcas])

HSP 1 Score: 146.7 bits (369), Expect = 2.7e-32
Identity = 76/130 (58.46%), Postives = 98/130 (75.38%), Query Frame = 1

Query: 8   ADRDGRISPDDLRRFY----SADADEDAIGSMMVVADMNRDGSVEYDEFERVLSGG---R 67
           ADRDG+IS DDLR FY    S  AD+D IGSMM +AD N+DG VEY+EFERVL+G    +
Sbjct: 30  ADRDGKISRDDLRSFYTGFLSGGADDDVIGSMMSLADFNKDGFVEYEEFERVLNGNGKRK 89

Query: 68  KNWTGIMEEVFKLMNEDGDGRLSVADLKSYMHFAGFSISDEEVVT----SGGDESDGVTY 127
           K + G+ME+VFK+M++DGDGRLS  DLKSYM +AGF ++DE+V       GGD+ D V++
Sbjct: 90  KTYNGVMEDVFKVMDKDGDGRLSHEDLKSYMQWAGFDLADEDVKAMIKLGGGDDKDSVSF 149

BLAST of CmaCh06G015660 vs. NCBI nr
Match: gi|743798441|ref|XP_011010625.1| (PREDICTED: calmodulin-like [Populus euphratica])

HSP 1 Score: 145.6 bits (366), Expect = 6.0e-32
Identity = 81/140 (57.86%), Postives = 99/140 (70.71%), Query Frame = 1

Query: 8   ADRDGRISPDDLRRFYSA----DADEDAIGSMMVVADMNRDGSVEYDEFERVLSGGRKN- 67
           ADRDG+IS DDLR FY+     DAD+D IGSMM VAD N+DG VEYDEFERVL G  +N 
Sbjct: 30  ADRDGKISKDDLRMFYAGFSRNDADDDVIGSMMSVADFNKDGFVEYDEFERVLDGFSENK 89

Query: 68  --------WTGIMEEVFKLMNEDGDGRLSVADLKSYMHFAGFSISDEEV--------VTS 127
                    +G+ME+VFK+M++DGDG+LSV DLKSYM +AGF   D+++          +
Sbjct: 90  ESSISTRSTSGVMEDVFKVMDKDGDGKLSVEDLKSYMQWAGFDAPDDDIKAMIKMAGCAA 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CALM_CANAX9.7e-0630.00Calmodulin OS=Candida albicans GN=CMD1 PE=3 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0L828_CUCSA2.4e-4364.52Uncharacterized protein OS=Cucumis sativus GN=Csa_3G167380 PE=4 SV=1[more]
A0A067K6N7_JATCU1.9e-3258.46Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19015 PE=4 SV=1[more]
M5Y5J5_PRUPE7.2e-3259.23Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012594mg PE=4 SV=1[more]
B9HX36_POPTR9.4e-3256.12Hypersensitive reaction associated Ca2+-binding family protein OS=Populus tricho... [more]
B9HIM5_POPTR3.6e-3156.12Hypersensitive reaction associated Ca2+-binding family protein OS=Populus tricho... [more]
Match NameE-valueIdentityDescription
AT5G49480.11.5e-2851.16 Ca2+-binding protein 1[more]
Match NameE-valueIdentityDescription
gi|659076972|ref|XP_008438964.1|6.9e-4464.94PREDICTED: calmodulin-related protein [Cucumis melo][more]
gi|449432924|ref|XP_004134248.1|3.4e-4364.52PREDICTED: calmodulin-A [Cucumis sativus][more]
gi|700202041|gb|KGN57174.1|3.4e-4364.52hypothetical protein Csa_3G167380 [Cucumis sativus][more]
gi|802704833|ref|XP_012084098.1|2.7e-3258.46PREDICTED: calmodulin [Jatropha curcas][more]
gi|743798441|ref|XP_011010625.1|6.0e-3257.86PREDICTED: calmodulin-like [Populus euphratica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042538 hyperosmotic salinity response
cellular_component GO:0005575 cellular_component
cellular_component GO:0005829 cytosol
molecular_function GO:0005509 calcium ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G015660.1CmaCh06G015660.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13833EF-hand_8coord: 11..52
score: 2.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 62..97
score: 10.664coord: 27..61
score:
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 8..103
score: 9.1
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 8..104
score: 8.03
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 8..126
score: 2.5
NoneNo IPR availablePANTHERPTHR10891:SF629SUBFAMILY NOT NAMEDcoord: 8..126
score: 2.5

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh06G015660CmaCh14G015850Cucurbita maxima (Rimu)cmacmaB284