CmoCh06G015620 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G015620
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ca2+-binding protein 1
Location	Cmo_Chr06 : 11007138 .. 11008043 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGGTCTTCAAGTTGATCGACGAGGACGGAGACGGACGGTTGAGTGTCGCCGATTTGAAGAGCTACATGCATTTCGACGGATTTTCGATCTCCGATGAGGAGGTTGTAGCGATGATTCGATTCGATGGCGGAGATGAATCGGACGGCGTAACTTATGACGGTTTGCTGAAGATTTTGGCTGTTGATAAGTTCTATTAGTTGATGAGTCTTTATGTTTCTTCAGATCAAAATGAATGCCCTCAAATCGTTCAAATGTTTTTTTCGGTTAAATTATAAATTAAATTTTACTTTTGTATTTATTTGATCTAATTAAAGTTTAAATTTATCTGTTTTTTAAAGGAAAATTTGTTTTAAATTTTTTTAGGCTATCCAAATATTTATTTAAAAAATACGAGGAAAGCCCCACGTTGGCTAATCAAAGAATACTCTCTCCATTGTAACTAAGCTAATTTAAGACATCTTAGGCTGAAAGTGGACAATATCTATCATTTTTGCATTTTATTACCTTTTTGATGAAGTGGTGGCTGATATTTTACAAGAATCCGTGGTTTTTATTTTCATAGATTGGACGTTAATCAAGCTGAAGAGTTGGACGAATGTTTCGACTGGAAGCTGAATGAATTGATATGGTCTCCATCAGGTTTGATTGCTCTCGGAGTCTCTATCTGATGTGTGAGTAAATTTTTGTAATTATTTATTTTGTCGGAAGTAGCTACGAAAGATTCTTGGATAGGAGTTGTTTAATTTTTCAAGTTCATTGCAATAACCATTGCTGTTGTGGATAACTAGAAAAGATTATCAGGATCCTTCGGTTTCATGAATTTATTTTAAAGCCAAATGTTGATTCAACGTGAAATCATAAATTTTTCTGTTCCAGGGCTCCGTACTTTGAAATTATAG

mRNA sequence

ATGGAGGAGGTCTTCAAGTTGATCGACGAGGACGGAGACGGACGGTTGAGTGTCGCCGATTTGAAGAGCTACATGCATTTCGACGGATTTTCGATCTCCGATGAGGAGGTTGTAGCGATGATTCGATTCGATGGCGGAGATGAATCGGACGGCGTAACTTATGACGGTTTGCTGAAGATTTTGGCTGTTGATAAGTTTGATTGCTCTCGGAGTCTCTATCTGATGTGGCTCCGTACTTTGAAATTATAG

Coding sequence (CDS)

ATGGAGGAGGTCTTCAAGTTGATCGACGAGGACGGAGACGGACGGTTGAGTGTCGCCGATTTGAAGAGCTACATGCATTTCGACGGATTTTCGATCTCCGATGAGGAGGTTGTAGCGATGATTCGATTCGATGGCGGAGATGAATCGGACGGCGTAACTTATGACGGTTTGCTGAAGATTTTGGCTGTTGATAAGTTTGATTGCTCTCGGAGTCTCTATCTGATGTGGCTCCGTACTTTGAAATTATAG

Homology

[Close]

BLAST of CmoCh06G015620 vs. TrEMBL
Match: A0A0A0L828_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G167380 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.1e-21
Identity = 53/64 (82.81%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           MEEVFK +D+DGDGRLS  DLKSYMH  GFSISDEEV AMIRF GGDESDGV Y+GLLKI
Sbjct: 110 MEEVFKTMDKDGDGRLSHGDLKSYMHLAGFSISDEEVTAMIRFGGGDESDGVCYEGLLKI 169

Query: 61  LAVD 65
           LAVD
Sbjct: 170 LAVD 173

[Close]

BLAST of CmoCh06G015620 vs. TrEMBL
Match: A0A061EP14_THECC (Ca2+-binding protein 1 OS=Theobroma cacao GN=TCM_021387 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.4e-17
Identity = 45/64 (70.31%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           ME+VFK++D+DGDGRLS  DLKSYM++ GFS SDE++ AMIR  GGDE++GV++DGLLKI
Sbjct: 102 MEDVFKVMDKDGDGRLSHEDLKSYMNWAGFSASDEDIKAMIRLGGGDENEGVSFDGLLKI 161

Query: 61  LAVD 65
           LAVD
Sbjct: 162 LAVD 165

[Close]

BLAST of CmoCh06G015620 vs. TrEMBL
Match: A0A067G974_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031051mg PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-16
Identity = 43/64 (67.19%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           ME+VFK++D+DGDGRLS  DLKSYM+  GF+ +D+++ AMIR  GGDE+DGV++DGLLKI
Sbjct: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKI 159

Query: 61  LAVD 65
           LAVD
Sbjct: 160 LAVD 163

[Close]

BLAST of CmoCh06G015620 vs. TrEMBL
Match: V4U007_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006076mg PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.6e-16
Identity = 43/64 (67.19%), Postives = 55/64 (85.94%), Query Frame = 1


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           ME+VFK++D+DGDGRLS  DLKSYM   GF+ +D+++ AMIR  GGDE+DGV++DGLLKI
Sbjct: 100 MEDVFKVMDKDGDGRLSHDDLKSYMKCAGFAATDDDIKAMIRLGGGDETDGVSFDGLLKI 159

Query: 61  LAVD 65
           LAVD
Sbjct: 160 LAVD 163

[Close]

BLAST of CmoCh06G015620 vs. TrEMBL
Match: W9S3W8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009269 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-15
Identity = 43/67 (64.18%), Postives = 53/67 (79.10%), Query Frame = 1


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           MEE FK++D+DGDG+LS  DLKSYM + GF  SDE++ AMI   GGDE +GV+Y GLL+I
Sbjct: 96  MEEAFKVMDKDGDGKLSHEDLKSYMEWAGFWASDEDIKAMIALGGGDEKEGVSYQGLLRI 155

Query: 61  LAVDKFD 68
           LAVD FD
Sbjct: 156 LAVDCFD 162

[Close]

BLAST of CmoCh06G015620 vs. TAIR10
Match: AT5G49480.1 (AT5G49480.1 Ca2+-binding protein 1)

HSP 1 Score: 80.1 bits (196), Expect = 7.0e-16
Identity = 36/60 (60.00%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           M++VFK++D+DGDGRLS  DLKSYM   G +++D+E+ +MIR  GGD +DGV++DGLLKI
Sbjct: 98  MKDVFKVMDKDGDGRLSYGDLKSYMDSAGLAVTDDEIKSMIRLAGGDLNDGVSFDGLLKI 157

[Close]

BLAST of CmoCh06G015620 vs. NCBI nr
Match: gi|659076972|ref|XP_008438964.1| (PREDICTED: calmodulin-related protein [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 5.2e-21
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           MEEVFK +D+DGDGRLS ADLKSYMH  GFSISDEEV AMIRF GGDESDGV Y+GLLKI
Sbjct: 88  MEEVFKTMDKDGDGRLSHADLKSYMHLAGFSISDEEVTAMIRFGGGDESDGVCYEGLLKI 147

Query: 61  LAVD 65
           LA+D
Sbjct: 148 LAID 151

[Close]

BLAST of CmoCh06G015620 vs. NCBI nr
Match: gi|449432924|ref|XP_004134248.1| (PREDICTED: calmodulin-A [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-20
Identity = 53/64 (82.81%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           MEEVFK +D+DGDGRLS  DLKSYMH  GFSISDEEV AMIRF GGDESDGV Y+GLLKI
Sbjct: 89  MEEVFKTMDKDGDGRLSHGDLKSYMHLAGFSISDEEVTAMIRFGGGDESDGVCYEGLLKI 148

Query: 61  LAVD 65
           LAVD
Sbjct: 149 LAVD 152

[Close]

BLAST of CmoCh06G015620 vs. NCBI nr
Match: gi|700202041|gb|KGN57174.1| (hypothetical protein Csa_3G167380 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-20
Identity = 53/64 (82.81%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           MEEVFK +D+DGDGRLS  DLKSYMH  GFSISDEEV AMIRF GGDESDGV Y+GLLKI
Sbjct: 110 MEEVFKTMDKDGDGRLSHGDLKSYMHLAGFSISDEEVTAMIRFGGGDESDGVCYEGLLKI 169

Query: 61  LAVD 65
           LAVD
Sbjct: 170 LAVD 173

[Close]

BLAST of CmoCh06G015620 vs. NCBI nr
Match: gi|590662006|ref|XP_007035829.1| (Ca2+-binding protein 1 [Theobroma cacao])

HSP 1 Score: 95.9 bits (237), Expect = 3.5e-17
Identity = 45/64 (70.31%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           ME+VFK++D+DGDGRLS  DLKSYM++ GFS SDE++ AMIR  GGDE++GV++DGLLKI
Sbjct: 102 MEDVFKVMDKDGDGRLSHEDLKSYMNWAGFSASDEDIKAMIRLGGGDENEGVSFDGLLKI 161

Query: 61  LAVD 65
           LAVD
Sbjct: 162 LAVD 165

[Close]

BLAST of CmoCh06G015620 vs. NCBI nr
Match: gi|641853107|gb|KDO71966.1| (hypothetical protein CISIN_1g031051mg [Citrus sinensis])

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-16
Identity = 43/64 (67.19%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           ME+VFK++D+DGDGRLS  DLKSYM+  GF+ +D+++ AMIR  GGDE+DGV++DGLLKI
Sbjct: 100 MEDVFKVMDKDGDGRLSHGDLKSYMNCAGFAATDDDIKAMIRLGGGDENDGVSFDGLLKI 159

Query: 61  LAVD 65
           LAVD
Sbjct: 160 LAVD 163

The following BLAST results are available for this feature:

BLAST of CmoCh06G015620 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G015620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L828_CUCSA	8.1e-21	82.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G167380 PE=4 SV=1	[more]
A0A061EP14_THECC	2.4e-17	70.31	Ca2+-binding protein 1 OS=Theobroma cacao GN=TCM_021387 PE=4 SV=1	[more]
A0A067G974_CITSI	1.6e-16	67.19	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031051mg PE=4 SV=1	[more]
V4U007_9ROSI	4.6e-16	67.19	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006076mg PE=4 SV=1	[more]
W9S3W8_9ROSA	1.3e-15	64.18	Uncharacterized protein OS=Morus notabilis GN=L484_009269 PE=4 SV=1	[more]

BLAST of CmoCh06G015620 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G49480.1	7.0e-16	60.00	Ca2+-binding protein 1	[more]

BLAST of CmoCh06G015620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076972\|ref\|XP_008438964.1\|	5.2e-21	82.81	PREDICTED: calmodulin-related protein [Cucumis melo]	[more]
gi\|449432924\|ref\|XP_004134248.1\|	1.2e-20	82.81	PREDICTED: calmodulin-A [Cucumis sativus]	[more]
gi\|700202041\|gb\|KGN57174.1\|	1.2e-20	82.81	hypothetical protein Csa_3G167380 [Cucumis sativus]	[more]
gi\|590662006\|ref\|XP_007035829.1\|	3.5e-17	70.31	Ca2+-binding protein 1 [Theobroma cacao]	[more]
gi\|641853107\|gb\|KDO71966.1\|	2.3e-16	67.19	hypothetical protein CISIN_1g031051mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042538	hyperosmotic salinity response
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G015620.1	CmoCh06G015620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13405	EF-hand_6	coord: 1..26 score: 5.
IPR002048	EF-hand domain	PROFILE	PS50222	EF_HAND_2	coord: 1..31 score: 13
IPR011992	EF-hand domain pair	GENE3D	G3DSA:1.10.238.10		coord: 1..61 score: 4.0
IPR011992	EF-hand domain pair	unknown	SSF47473	EF-hand	coord: 2..65 score: 8.04
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 9..21 scor
None	No IPR available	PANTHER	PTHR10891	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	coord: 1..78 score: 1.3
None	No IPR available	PANTHER	PTHR10891:SF629	SUBFAMILY NOT NAMED	coord: 1..78 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G015620	Cucsa.252480	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G015620	CmaCh14G015850	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G015620	CmaCh06G015660	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G015620	Cla021803	Watermelon (97103) v1	cmowmB793
CmoCh06G015620	Csa3G167380	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G015620	MELO3C006721	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G015620	ClCG05G006630	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G015620	CSPI03G15050	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G015620	Lsi05G014160	Bottle gourd (USVL1VR-Ls)	cmolsiB759
CmoCh06G015620	Cp4.1LG03g11850	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G015620	Cp4.1LG08g05340	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G015620	MELO3C006721.2	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G015620	CsaV3_3G015240	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G015620	Cla97C05G088220	Watermelon (97103) v2	cmowmbB833
CmoCh06G015620	Bhi01G000788	Wax gourd	cmowgoB1005
CmoCh06G015620	CsGy3G015180	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G015620	Carg23731	Silver-seed gourd	carcmoB1276
CmoCh06G015620	Carg19616	Silver-seed gourd	carcmoB0390

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G015620	Silver-seed gourd	carcmoB0103
CmoCh06G015620	Watermelon (97103) v2	cmowmbB838
CmoCh06G015620	Cucurbita moschata (Rifu)	cmocmoB224
CmoCh06G015620	Cucurbita maxima (Rimu)	cmacmoB363
CmoCh06G015620	Watermelon (Charleston Gray)	cmowcgB747
CmoCh06G015620	Watermelon (97103) v1	cmowmB803
CmoCh06G015620	Cucurbita pepo (Zucchini)	cmocpeB766